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Homology
BLAST of Ec-00_007150.2 vs. uniprot
Match: A0A6H5K8X9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8X9_9PHAE) HSP 1 Score: 165 bits (418), Expect = 6.860e-41 Identity = 137/166 (82.53%), Postives = 138/166 (83.13%), Query Frame = 1
Query: 700 VDSSDEADEDSTVMAASAAAECAISTTCDSXXXXXXXXXXXXXXXXXXXXXXXXXXSSSSSCXXXXXXXXXXXXXXXXXXVIGGVGAERYAFEGDDDGIIGTAADPFVDLDTAPAAGLSFSLPAAHRWGXXXXXXXXXXXXXQPLVAATGPHAGGSWQPAAAGAPR 1197
VDSSDEADEDSTV+AASAAAECAISTTCDSXXXXXXXXXXXXXXXXXXXXXXXXXXSSSSSC IGG GAERYAFEGDDD IIG AADPFVDLDTA AAGLSFSLPAAH XXXXXXXXXXX QPLVAATGPHAGGSWQPAAAGAPR
Sbjct: 166 VDSSDEADEDSTVIAASAAAECAISTTCDSXXXXXXXXXXXXXXXXXXXXXXXXXXSSSSSCSSASGSG-----------AIGGFGAERYAFEGDDDSIIGIAADPFVDLDTAAAAGLSFSLPAAHXXXXXXXXXXXXXXPPQPLVAATGPHAGGSWQPAAAGAPR 320
BLAST of Ec-00_007150.2 vs. uniprot
Match: D7G3W2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W2_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 3.620e-7 Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1
Query: 700 VDSSDEADEDSTVMAASAAAECAISTTCDS 789
VDSSDEADEDSTVMAASAAAECAISTTCDS
Sbjct: 9 VDSSDEADEDSTVMAASAAAECAISTTCDS 38
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Length | 2166 |
Hectar predicted targeting category | signal anchor |
Gene id | Ec-00_007150.2 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_007150.2 ID=Ec-00_007150.2|Name=Ec-00_007150.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=119bp MTRDLNPIVRVVWLSLRHGLLVWAMVLRTRSRGVVIPCTFFCHVIVSCLL SWGLFFRLHGRGKIPEGDQRLVCFVSRDVGSGSIGKYKCPFVFVFFLNQG GVRNFFLGVVPFFYFIEI* back to topspliced messenger RNA >Ec-00_007150.2 ID=Ec-00_007150.2|Name=Ec-00_007150.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2166bp|location=Sequence derived from alignment at chr_00:11240414..11249254- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.
CTTCCACGTTCTTCCCAAAAATCTTGCAAAAAACAGGGGATGCGAAGGAT CTGTCCCCTCCCCCCTGTCTCTTAGATCGTGCACACCTCACATCAAGCCC TCTCACTTCAACCATCCTCTCGCGAAGGCACTCGCGTGCACTAGGTACAT CGGTAGGCGACGACGGAGGCACCCAGCGCCACAAGATGAAGCGGAGCAGA ACATGCCTGAACTTGTTCGAGCTCGACACGCCGGCGGCGCCCAAGCGGAC ATGCTCCTTGCCGAGCAATCTGGGGAGCTTCAGCAGCAGCAGCAGCAGCA GCAGCAGCTGCGGCAGCAGCAGCGGCAGTAGTTTTAGCGTCAGCGTCAGA CAGAACCAGGAGAGGTTGCTGTTTTTGCAGCAACACGCGGCGTCGACGCT GGCTCAAGGGACAGCAGCCGCCCCCGCGACCATCGCCGACGGAAAATTTG TGGTGGAGAGCATCGTGCGCTCGCAGGGGTCTCTCAACGAGATCACCATC CACGAGGGGCAGCAGTTCATCGGGCAGGAGAGCAACGAGGCCGCTACGGC CGTACCGCAACAACAATCTTTCGCCGCCCGTGTTCAATCCTCCGAGCAGC AGCAGCAGCAGCAGCAGCAGCAGCCCCTCTCCCTGTTTGGCGGGGCTGTG ATTGGGAGCCTGTTCGAAGACGGCGGTGAATCGAGCGACTACTTCTGTGG GGTGGACTCGTCAGACGAAGCCGACGAGGACAGCACGGTCATGGCCGCTT CGGCAGCGGCAGAATGCGCCATATCAACGACATGCGACAGCAGCCGCGGA GCCGAGTGTGCACGGCAAGTGTCAGACGCCGACGACAACAACGCCTCCTG CGCCAGGCACGTCTCCGACTCTAGCAGCAGCAGTTGCAGCAGCATCAGCA ATGGCAGCAGCGGCAGTGGCAGCAGCGGCGGCGGCAGCGGCGTCATCGGA GGTGTCGGCGCCGAAAGGTATGCCTTTGAGGGCGACGATGACGGCATCAT CGGCACCGCCGCCGACCCCTTCGTCGACCTCGACACCGCCCCCGCCGCGG GCCTCTCGTTCTCGCTCCCGGCGGCGCATCGTTGGGGCGGCGGCGGCGGC GGCGGCGGTGGCGTTGTTGTGCCGCCTCAGCCGCTGGTGGCGGCGACCGG CCCGCACGCCGGCGGCTCGTGGCAGCCGGCAGCGGCGGGGGCGCCTAGGG AGGTGGGAGTAAGGGACGGCCTGCTGGGAAGGGGAAGGGTATGTTTTCCG CTCTCCGTTGTGCGAAGAGCAGTAATGAAGCCAACGCAGCGAGCAAAGTC AGCCCCATCGCAGTGAACAGTTTCATGTACCAGGAGGGCGGTAGCCAAGT ACCTTGCCGTCAGCGTGTGAGAATTGCGGTCGGCGTCACAGCAGCAACCG TGTAGAAGGAAGGCCCCCCGCCACAGCAGTTTATCCACTATGTAGCTTTT TCGAAAGCTGCAGTTTTAAAGCGGGACAGGAGGCGGTGAAGTCTAATACT GTCTTCTGTTTGTTGTTGCGTTTGTTTGCGTCCCGTGTTGGCGTTGTTAA TTTCGAACGCGGAGCGTGATTGTAACGCCGCGCTCCCTTTGGCTGTGCGG TGCACTGATTGTTGCGTGTCTGGCGGAAGGGATGACGCGCGACTTGAATC CGATTGTGAGAGTTGTTTGGTTGTCGCTCCGACATGGGTTACTGGTGTGG GCTATGGTTTTGCGGACACGTTCGCGAGGGGTCGTTATCCCATGTACTTT TTTTTGTCATGTCATTGTTTCTTGCCTGCTGTCTTGGGGGTTGTTTTTTC GGCTACATGGTCGAGGCAAAATACCCGAAGGCGATCAACGTTTAGTTTGT TTTGTCTCCCGTGACGTTGGATCGGGTTCGATAGGAAAGTACAAGTGTCC CTTTGTTTTTGTTTTTTTTTTAAATCAGGGCGGCGTGCGCAACTTCTTTC TTGGCGTGGTTCCGTTTTTTTATTTCATTGAGATTTGATTTATTTGGCAT CTATACTAGAGGAGCAGGTAGCCTTAAAGGTTGCGGGGTCCGGGTGGTGT CTGTGCTTGGTTGTATCCCTTGTGTTTGGTGTTTTTCTTCCAGCGGGGGT GTGTCTCGCTCTGCCTGGTGTCGATAAACGAGAGCGAGTGCAACATGCAC TATCACTAATCGATTA back to topprotein sequence of Ec-00_007150.2 >Ec-00_007150.2 ID=Ec-00_007150.2|Name=Ec-00_007150.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=119bp
MTRDLNPIVRVVWLSLRHGLLVWAMVLRTRSRGVVIPCTFFCHVIVSCLL SWGLFFRLHGRGKIPEGDQRLVCFVSRDVGSGSIGKYKCPFVFVFFLNQG GVRNFFLGVVPFFYFIEI* back to topmRNA from alignment at chr_00:11240414..11249254- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Ec-00_007150.2 ID=Ec-00_007150.2|Name=Ec-00_007150.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=8841bp|location=Sequence derived from alignment at chr_00:11240414..11249254- (Ectocarpus species7 Ec32 male_plus_femaleSDR) CTTCCACGTTCTTCCCAAAAATCTTGCAAAAAACAGGGGATGCGAAGGAT
CTGTCCCCTCCCCCCTGTCTCTTAGATCGTGCACACCTCACATCAAGCCC
TCTCACTTCAACCATCCTCTCGCGAAGGCACTCGCGTGCACTAGGTACAT
CGGTAGGCGACGACGGAGGCACCCAGCGCCACAAGATGAAGCGGAGCAGA
ACATGCCTGAACTTGTTCGAGCTCGACACGCCGGCGGCGCCCAAGCGGAC
ATGCTCCTTGCCGAGCAATCTGGGGAGCTTCAGCAGCAGCAGCAGCAGCA
GCAGCAGCTGCGGCAGCAGCAGCGGCAGTAGTTTTAGCGTCAGCGTCAGA
CAGAACCAGGAGAGGTTGCTGTTTTTGCAGCAACACGCGGCGTCGACGCT
GGCTCAAGGTGCGTGAGCCTTGCGAGGGGTGGCTGCTGTCTACCGCCGAC
CTCGCTTTGTGCATGTGGGGTTGTCGAAGCTGTCTAGCGCGTTGACTTGT
GTGCGCCCTTCCCCCCTCTTGTTACGAGAGCCACTGAGTAGGATCTCTCC
GCGACGCGCGCTTCGAGTTGATGCACATCCGTCTTTGTGATGATGGCTGC
ATGTACATGCTGAGCGAAACAGGGCCTACAGCGCCCCCCCCCCCCACGGC
AGATGTCGGCGAGGAAGGAGCCGCGGTTCGGCGTTCCGCTTGTTGGGGCG
TCGGGGGGGGGCGCTCGGCCCTGGCGTGCTCTCTGTTTTGTGGGCCGGGG
TGAAGTTGCCTGTGTGTCGTAGCCCGGCCGGCCGGCCCCACTTTCGTCAG
TTTTGAAAAAAAATGGAATGCATATGCATAGAGCCTGCACACACAAACCC
TCTTCCTGCGTTGATGACCGCAGGGACAGCAGCCGCCCCCGCGACCATCG
CCGACGGAAAATTTGTGGTGGAGAGCATCGTGCGCTCGCAGGGGTCTCTC
AACGAGATCACCATCCACGAGGGGCAGCAGTTCATCGGGCAGGAGAGCAA
CGAGGCCGCTACGGCCGTACCGCAACAACAATCTTTCGCCGCCCGTGTTC
AATCCTCCGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCCTCTCCCTG
TTTGGCGGGGCTGTGATTGGGAGCCTGTTCGAAGACGGCGGTGAATCGAG
CGACTACTTCTGTGGGGTGAGTCAACGCTGCTTGTTTGCATCCGGGCCGT
CCCTGCCGTCGCGTTTCTCTGCCGTAGTATGCGCTGTTGTAAACCGCAAA
CTTCAACGAAAAGTTGAAAACCGGTTAATCTGGAATCGTTCTTCTCTTCC
TTCTTCCGCTGGGTATCCACTCTCAACCACAGTGTTTTTCGACTCAGCGC
ACGAACATGCGAGTGCTGCTTCTAGAACTTATCGTAGAACTGGAGAGGGA
GCGTGATCTCCCATCACATATAGATAAAAACGCTGGAGGCTGTTGTTGTT
CGGCCGGTATGTTTCCAACGCCTACCTAAAATGTGCACGGCGACACAGGC
GTTGCAGCGTTTCCTACTAGACTACATGCAACGCCGTTAGCCTTTGAATC
ACATATTCGCGAGAAATCCGGTATGACCCCGACACACGTGCGTGCGTGTA
CATAGCCCTCCGGCTCGGTGAAGAAAAATCAGAAGTCTTTCGTTTCCCTC
CGCTGCCGCTGCGGCACGTTCGATTTCCGCACGTCTTTTTACACAAGGCC
AACACTGATTTTTGTTTGTTCTTTGGAAGTTATCGTTGGGGTCTTGTGGC
CGCCCGCCCCCCCTCCCCGCTCTCCGGTGTGGCCATCACCGACGTGACCC
ACTTCGCTCTTTCAAGGCGCGAGATGCACATGTCGCGTGTGTGCGTTGCG
GCTTGCATGGTGGTGGTATCCTGGCACTCGAAGACAACAACGTATGCATG
CAGACAGCAAAAGTATGCTGGTATGTATATTGTATAGTGTTTCGGTACGT
GTTCATTTCGTTCGAAAGTGAGCGATGAGCGGCTTCGGGGTGACGTCAAA
CATGCGCACAGACCCCCTCCCTTACCTCCCTTACGAGAAGTTGGAGATTT
AGGAATGTTTCGTTCGTGTGCCTTATCTTGTCAAGCTTCCCCTCCGTTAT
GTGGGGTCGGGGGGTTGTGTTGACTTATAGTATACATCCCTGCCTTCCTT
ACCCTCTGCGGTGGGGACACATCCAATAAATATCCGCAAGCCGTGCCCTA
CTCAAAAGTCACACCAGTTTGATACAGCTCGATGAGTTGAGAACCGAAGG
GAACCTTCAAGATGCATGCACGTTTTGCACTCTTAATGTGAAGACAACTA
CAACCGTTGAGCGTTTGCCACAAATCTGCGGCCAGCAGCATGATGGTTGA
GAGAACGGCGGTGGAGAGGGGAGTGAGCGGGCGGATGTGAACGGAATTTG
AAGAAGCGATGAACAAATCCAAGTAAACTGGTTGCACATGATGAACACAT
GCCTACATGTCACCCGACAAATTGCGGCGAGAGTCCTCTCATGTTTAGAA
AGATGGATGGGAGGCCACGACAGACAAAGCGCAGGCACAGACGCATGCTC
GTAAACGTGTAATGTGCACAGCAGTGGGGGTACATATTTTCCGCACGAAA
GTTTCGACGGTCCCGTAACTGCTTCAACATATGCCCGAGAAAAATGTGCC
GTACTACGCAGCTGCCGTTTGGTGCACGAAACGCGCTGTACAAGTACACG
GCAAGGAGAGGGACAACAGCACCAGTCCTTGCAAGCATGGTTGGGCGTAT
CGGCATGATTGTCTACATGAAACTAGCCACGTACCTACTGGTGGTAGATT
TCGCGGTGGTTGTGTTTTGCGGCACGCTGGTGTGCGGTGACTCACTCTCT
GCCGCTGCGGTGGTGTCTACATAGTACGTCAAAATGTCGATGGGTCGTTG
TTGAAGCCGCAAAAACGAAAAAACAAAGTGCCGTGCGTGCATGCGTGTTT
GCGTTACAACGCGGCACGCAGTATTTGGCAGATGACGCCGACGTGATGGC
TTGAGCCACACGATGCTATGTACAACATGTACGATGATGCATTCATCGTG
CAGATGCCAATCGAGGAGGCAGATTGCTTGGACGAAGTTGTTCGTTTCCC
CGTTCGGAGTTCGACTTCCATCTCCAATTTTCTCAAATCAAGAGGCAAAG
CACCCGCACTTCCACGAGCTCCTACTTTTGCCTATGGAGGCTCATTTCAC
GTATTCTGTGAGGGATATTGTAGGTATCCCAACCGTTGAAGGTGTTATTC
TACGGTTGTTGAATGAGCACCTGTTGTCGTGGTCAATTTTTTTTGTTGGT
ATTTTTTTGTTTTGGCTCACGCTCCCAACTGCCACTGTCTCAAGTGATGG
CGCGTGCTTCAGTCGACACACCAGGGTTAATTATCCCTGGAATGAAACGC
GACTCTGCCGGTTGTGCATCCGTAACTTTTAATCAGCCTGACATGAGCCT
CGTTCACTGGTCGATGGCCACCTCCCTGTCGTGCCACAACAACCCCGGGG
TTTGCACCCCGCCGCGGCTACTTTTGTTGCGATCGGACCGTGGTTTTCGG
AAATGTCCCTTGGCCTGACAGGAAATGGGACCTTCCCATGGGCCAGTTTC
TCCGCCACACATTTGCCGCACTCGCCCATATGCACACTGGCTTACCATGA
CACTAGCCCCGAAAAAGTATCGATCAGTCAGCAAGAGGACTTTGGCTTCC
AGAGGCCTCCGCCCCAGCAGCGCTGTTGTGTGTGTTGCCGCTGCCAAATT
GAGAGCGTTGGACCACTCTTGACTGACGCAACCAAGTCTACCACCGCAGC
TTTGCCCACCTTTCACTCGCCTGTTGTCATGATAATTCGTTTGACGAATC
ACAGCAGATGTGCGAGAGTTCTCGGAACACAACCCAAGGTTTCGTGCGTC
GGGTCTGATTTTTCTCGTCTGTATCCGCTGACCCAAGTTTGTGTCTTTCG
GTATGCATCGCACTACAGGTGGACTCGTCAGACGAAGCCGACGAGGACAG
CACGGTCATGGCCGCTTCGGCAGCGGCAGAATGCGCCATATCAACGACAT
GCGACAGCAGCCGCGGAGCCGAGTGTGCACGGCAAGTGTCAGACGCCGAC
GACAACAACGCCTCCTGCGCCAGGCACGTCTCCGACTCTAGCAGCAGCAG
TTGCAGCAGCATCAGCAATGGCAGCAGCGGCAGTGGCAGCAGCGGCGGCG
GCAGCGGCGTCATCGGAGGTGTCGGCGCCGAAAGGTATGCCTTTGAGGGC
GACGATGACGGCATCATCGGCACCGCCGCCGACCCCTTCGTCGACCTCGA
CACCGCCCCCGCCGCGGGCCTCTCGTTCTCGCTCCCGGCGGCGCATCGTT
GGGGCGGCGGCGGCGGCGGCGGCGGTGGCGTTGTTGTGCCGCCTCAGCCG
CTGGTGGCGGCGACCGGCCCGCACGCCGGCGGCTCGTGGCAGCCGGCAGC
GGCGGGGGCGCCTAGGGTAAGCGTTAGGATTAGCGGCGGCGGCGGCGGCG
GCGGCGGTGGTGTGGGCATGAGTAGGGAGCGATGCATGACGGTGCNNNNN
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TAAAGTAGATGGTGACGAGAAGTAGGGGAGCGATACAGACAGACTAAATC
GAGCATTTTAGAGAGAGCTGTATGAGTATTGGCGCGCTCCCAGTATGGGC
GAGTTGGTCGCTCCCTGTCCGAATGCTCGTGGCAGCCAATTTTTTTCTTT
TTTCTTCTCTTTTTTTCGGACCAGGAGGTGGGAGTAAGGGACGGCCTGCT
GGGAAGGGGAAGGGTATGTTTTCCGCTCTCCGTTGTGCGAAGAGCAGTAA
TGAAGCCAACGCAGCGAGCAAAGTCAGCCCCATCGCAGTGAACAGTTTCA
TGTACCAGGAGGGCGGTAGCCAAGTACCTTGCCGTCAGCGTGTGAGAATT
GCGGTCGGCGTCACAGCAGCAACCGTGTAGAAGGAAGGCCCCCCGCCACA
GCAGTTTATCCACTATGTAGCTTTTTCGAAAGCTGCAGTTTTAAAGCGGG
ACAGGAGGCGGTGAAGTCTAATACTGTCTTCTGTTTGTTGTTGCGTTTGT
TTGCGTCCCGTGTTGGCGTTGTTAATTTCGAACGCGGAGCGTGATTGTAA
CGCCGCGCTCCCTTTGGCTGTGCGGTGCACTGATTGTTGCGTGTCTGGCG
GAAGGGATGACGCGCGACTTGAATCCGATTGTGAGAGTTGTTTGGTTGTC
GCTCCGACATGGGTTACTGGTGTGGGCTATGGTTTTGCGGACACGTTCGC
GAGGGGTCGTTATCCCATGTACTTTTTTTTGTCATGTCATTGTTTCTTGC
CTGCTGTCTTGGGGGTTGTTTTTTCGGCTACATGGTCGAGGCAAAATACC
CGAAGGCGATCAACGTTTAGTTTGTTTTGTCTCCCGTGACGTTGGATCGG
GTTCGATAGGAAAGTACAAGTGTCCCTTTGTTTTTGTTTTTTTTTTAAAT
CAGGGCGGCGTGCGCAACTTCTTTCTTGGCGTGGTTCCGTTTTTTTATTT
CATTGAGATTTGATTTATTTGGCATCTATACTAGAGGAGCAGGTAGCCTT
AAAGGTTGCGGGGTCCGGGTGGTGTCTGTGCTTGGTTGTATCCCTTGTGT
TTGGTGTTTTTCTTCCAGCGGGGGTGTGTCTCGCTCTGCCTGGTGTCGAT
AAACGAGAGCGAGTGCAACATGCACTATCACTAATCGATTA back to topCoding sequence (CDS) from alignment at chr_00:11240414..11249254- >Ec-00_007150.2 ID=Ec-00_007150.2|Name=Ec-00_007150.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=357bp|location=Sequence derived from alignment at chr_00:11240414..11249254- (Ectocarpus species7 Ec32 male_plus_femaleSDR) ATGACGCGCGACTTGAATCCGATTGTGAGAGTTGTTTGGTTGTCGCTCCG ACATGGGTTACTGGTGTGGGCTATGGTTTTGCGGACACGTTCGCGAGGGG TCGTTATCCCATGTACTTTTTTTTGTCATGTCATTGTTTCTTGCCTGCTG TCTTGGGGGTTGTTTTTTCGGCTACATGGTCGAGGCAAAATACCCGAAGG CGATCAACGTTTAGTTTGTTTTGTCTCCCGTGACGTTGGATCGGGTTCGA TAGGAAAGTACAAGTGTCCCTTTGTTTTTGTTTTTTTTTTAAATCAGGGC GGCGTGCGCAACTTCTTTCTTGGCGTGGTTCCGTTTTTTTATTTCATTGA GATTTGA back to top
Synonyms
The feature 'Ec-00_007150.2' has the following synonyms
Synonym |
Esi0534_0005 |
Esi_0534_0005 |
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