Ec-00_006430.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_006430.1
Unique NameEc-00_006430.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length233
Homology
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BLAST of Ec-00_006430.1 vs. uniprot
Match: D7G6I6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6I6_ECTSI)

HSP 1 Score: 449 bits (1156), Expect = 3.020e-146
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 3 
Query: 1329 MDKFVQPYVPGSNEAAHIFVLANKPAAAAAGRQRRSVAAAPATGASDNSTGKRSRGVNGLSSSNPKTISASSRCRTFPGEGLVVSAGALYCEPCAKRLGTCLSTIRAHCGLLKDGSHKAEPNQHMQKLEVHLAAEFEAPNRKTRFTQYCNKRRAVYGKTVDPEVNDKRCKLITQVMGAGISLSKLDPLRSMFTSLGADMVGSSKSKEYIGFINEEQIRSIRQDILGKDIGIAI 2027
            MDKFVQPYVPGSNEAAHIFVLANKPAAAAAGRQRRSVAAAPATGASDNSTGKRSRGVNGLSSSNPKTISASSRCRTFPGEGLVVSAGALYCEPCAKRLGTCLSTIRAHCGLLKDGSHKAEPNQHMQKLEVHLAAEFEAPNRKTRFTQYCNKRRAVYGKTVDPEVNDKRCKLITQVMGAGISLSKLDPLRSMFTSLGADMVGSSKSKEYIGFINEEQIRSIRQDILGKDIGIAI
Sbjct:    1 MDKFVQPYVPGSNEAAHIFVLANKPAAAAAGRQRRSVAAAPATGASDNSTGKRSRGVNGLSSSNPKTISASSRCRTFPGEGLVVSAGALYCEPCAKRLGTCLSTIRAHCGLLKDGSHKAEPNQHMQKLEVHLAAEFEAPNRKTRFTQYCNKRRAVYGKTVDPEVNDKRCKLITQVMGAGISLSKLDPLRSMFTSLGADMVGSSKSKEYIGFINEEQIRSIRQDILGKDIGIAI 233
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BLAST of Ec-00_006430.1 vs. uniprot
Match: D7G344_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G344_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 2.160e-107
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 3 
Query: 1329 MDKFVQPYVPGSNEAAHIFVLANKPAAAAAGRQRRSVAAAPATGASDNSTGKRSRGVNGLSSSNPKTISASSRCRTFPGEGLVVSAGALYCEPCAKRLGTCLSTIRAHCGLLKDGSHKAEPNQHMQKLEVHLAAEFEAPNRKTRFTQYCNKRRAVYGKTVDPEVNDKRCK 1838
            MDKFVQPYVPGSNEAAHIFVLANKPAAAAAGRQRRSVAAAPATGASDNSTGKRSRGVNGLSSSNPKTISASSRCRTFPGEGLVVSAGALYCEPCAKRLGTCLSTIRAHCGLLKDGSHKAEPNQHMQKLEVHLAAEFEAPNRKTRFTQYCNKRRAVYGKTVDPEVNDKRCK
Sbjct:    1 MDKFVQPYVPGSNEAAHIFVLANKPAAAAAGRQRRSVAAAPATGASDNSTGKRSRGVNGLSSSNPKTISASSRCRTFPGEGLVVSAGALYCEPCAKRLGTCLSTIRAHCGLLKDGSHKAEPNQHMQKLEVHLAAEFEAPNRKTRFTQYCNKRRAVYGKTVDPEVNDKRCK 170
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BLAST of Ec-00_006430.1 vs. uniprot
Match: A0A6H5K0E1_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.130e-12
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = -2 
Query:    2 MDAGAATETARGSSPTRSAQEVLRRMSLNSPPSRTDNPRQVKRAK 136
            MDAGAATETARGSSPTRSAQEVLRRMSLNSPPSRTDNPRQVKRAK
Sbjct:    1 MDAGAATETARGSSPTRSAQEVLRRMSLNSPPSRTDNPRQVKRAK 45
[Close]
BLAST of Ec-00_006430.1 vs. uniprot
Match: A0A6H5K9K3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K3_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 8.210e-5
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 3 
Query: 1482 KRSRGVNGLSSSNPKTISASSRCRTFPGEGLVVSAGALYCEPCAKRLGTCLSTIRAHCGLLK 1667
            +RS G NG +  N  TI+   R R F  +GL+VS G ++CEPC K+L     TI+ HCGL K
Sbjct:   55 RRSPGKNGTN--NATTITPQERVRKFKNQGLIVSNGHVFCEPCGKQLSNDSDTIKTHCGLAK 114
The following BLAST results are available for this feature:
BLAST of Ec-00_006430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G6I6_ECTSI3.020e-146100.00Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G344_ECTSI2.160e-107100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0E1_9PHAE2.130e-12100.00Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A6H5K9K3_9PHAE8.210e-546.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:10122994..10125546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score78.2
Seed ortholog evalue5.7e-12
Seed eggNOG ortholog400682.PAC_15703819
Length2029
Hectar predicted targeting categoryother localisation
Gene idEc-00_006430.1
EggNOG OGs2F3H4@1,2T4GH@2759,3AMYP@33154,3C10E@33208
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_006430Ec-00_006430Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 10122994..10125546 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006430.1.1Ec-00_006430.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 10122994..10124832 +
Ec-00_006430.1.2Ec-00_006430.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 10125357..10125546 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0064305UTR:Ec-00_006430.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 10122994..10124322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006430.1CDS:Ec-00_006430.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 10124323..10124832 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0064303UTR:Ec-00_006430.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 10125546..10125546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006430.1Ec-00_006430.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 10124323..10125545 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_006430.1 ID=Ec-00_006430.1|Name=Ec-00_006430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=233bp
MDKFVQPYVPGSNEAAHIFVLANKPAAAAAGRQRRSVAAAPATGASDNST
GKRSRGVNGLSSSNPKTISASSRCRTFPGEGLVVSAGALYCEPCAKRLGT
CLSTIRAHCGLLKDGSHKAEPNQHMQKLEVHLAAEFEAPNRKTRFTQYCN
KRRAVYGKTVDPEVNDKRCKLITQVMGAGISLSKLDPLRSMFTSLGADMV
GSSKSKEYIGFINEEQIRSIRQDILGKDIGIAI
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spliced messenger RNA

>Ec-00_006430.1 ID=Ec-00_006430.1|Name=Ec-00_006430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2029bp|location=Sequence derived from alignment at chr_00:10122994..10125546+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ACCTTTGCCCTCTTGACTTGACGAGGGTTATCGGTACGGGAGGGAGGGCT
GTTGAGGCTCATCCTGCGCAGCACCTCTTGCGCCGACCTCGTCGGGCTTG
ACCCCCGCGCCGTCTCGGTCGCAGCTCCGGCATCCATGCTCCCTCTCGGC
TCAACGCTCCTCCTTGCCTGTCCGTTAAGTAGCAGCGGTGGGAGCCCAAG
CAGCTTAAGGCCTTGTTGTCAACACCTAGTGTCGAGAAATATGATGCACC
CCACGCGCAGCAAAGGGAAAGTCCCCGTGCCTGGGCCGCCCTTGCGTACG
ACCTCCGATCGATGCAACTTGTAGATGCCTCGGCGGGAAAACGCTGCAGC
GCTTCCAAGTTGAGACGGCGACACTGCAGTACCGACTGCGGAGGCAGAGG
GAACTCGTGCGTTCTCGGGGCTTGAAGGGGAAGCGCAGTAGCCGTGTGTG
AGCGCTCTTGTTTGCCGTGGTGTGCCCGCCAAAAACACGGCACCCGGCCT
TTCCTTGCCCACATTTAAAAAAAAATCGAAAAAAAATAGTAGGACACATC
CCCGCTTGTTGGTGTTCGCCTTCCTGCCACTGGAACTCTAACTCGGGGGG
CACGCAACCTGGCATTTCGGTTGCCACAATTTGGCCCGGCCTTCTAAGTC
GCGTCTACGTCTAACTCCGTTTCCACGGGAGAGGCACGTCTATCCCCCAA
TATGGCGACTAGGCACGTCGTACAGTCGTCTAACGCAATGGGGGATGCGA
CTGGGTTACTGTTAAGGAGCTGTCTCGACGACTTAACAGGACGTTAGACG
CAGGGAAGGAGTAGCTCGCTCTCTTCCGCCTTCCGCCCTCCATCTCTTCT
CTCTCCAACCCTCTCTCCCCTCCGTTCTCCGTAGAAGTACCTCCTACCAA
AATGGAAGGAAGGATGTTTGCATGTTTGCACTCAAATTTTGAAAAATTTG
CCCGCCGAAAATGTTCCGCGCTCCGGCCAAGGCCCTCACGCCTTGACTCA
CGCCTCACGCCAACGCCGCCTCACACACTCCACACTCCACACTCCACACC
TACTTTACGGCCCCCCGAGTCCCGAGTCCCGAGCCCCGTTATGTCTTTGA
CCCCACCAGCATCGGCTACAACGCCAATGGCGGCGGTGTCGCTTACTACC
ACGACACACAACGCGTCCGTCGGAACGGCCTCAAAACGGCCTCCACCCCC
GTGTCCTTGGTCGGGACCAGCACATCTCCAGTCGTTGCTCCTGCTGCAGA
GGAGGCTGCTGCTGGAGCTGCTGGTGCTGCTGCTCACCCAGTGCCTCCGG
GAGGCACACAAGCACCAACATCTGGAGCGATGGACAAGTTTGTGCAGCCA
TATGTTCCAGGGAGTAATGAGGCTGCGCACATCTTCGTCTTGGCGAACAA
GCCTGCAGCCGCTGCCGCCGGTCGCCAGCGGAGGAGTGTTGCTGCGGCTC
CGGCCACGGGAGCAAGTGACAACAGCACAGGCAAGCGATCTCGAGGGGTG
AACGGACTTTCGTCCTCCAACCCGAAAACTATTTCGGCAAGCTCACGCTG
CAGGACTTTTCCGGGTGAGGGCCTCGTCGTTTCCGCGGGCGCCCTCTACT
GCGAACCGTGCGCCAAGCGCCTGGGGACTTGCCTCTCCACGATCAGGGCC
CATTGTGGACTCCTGAAGGACGGTAGTCACAAGGCGGAACCCAACCAGCA
CATGCAGAAGCTGGAGGTGCACTTGGCCGCAGAGTTCGAGGCGCCTAACA
GGAAGACTCGCTTCACGCAGTACTGCAACAAGAGGCGGGCCGTATACGGG
AAGACCGTCGATCCCGAGGTCAACGACAAGCGCTGCAAGCTAATCACTCA
AGTCATGGGTGCCGGAATATCACTCTCCAAGCTTGACCCTCTCCGGAGCA
TGTTCACCAGCCTCGGAGCAGACATGGTGGGGTCATCGAAGTCGAAGGAG
TACATCGGCTTCATCAACGAGGAGCAGATTCGCTCCATTCGTCAGGACAT
CCTTGGCAAGGACATCGGTATTGCCATCG
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protein sequence of Ec-00_006430.1

>Ec-00_006430.1 ID=Ec-00_006430.1|Name=Ec-00_006430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=233bp
MDKFVQPYVPGSNEAAHIFVLANKPAAAAAGRQRRSVAAAPATGASDNST
GKRSRGVNGLSSSNPKTISASSRCRTFPGEGLVVSAGALYCEPCAKRLGT
CLSTIRAHCGLLKDGSHKAEPNQHMQKLEVHLAAEFEAPNRKTRFTQYCN
KRRAVYGKTVDPEVNDKRCKLITQVMGAGISLSKLDPLRSMFTSLGADMV
GSSKSKEYIGFINEEQIRSIRQDILGKDIGIAI
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mRNA from alignment at chr_00:10122994..10125546+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_006430.1 ID=Ec-00_006430.1|Name=Ec-00_006430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2553bp|location=Sequence derived from alignment at chr_00:10122994..10125546+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ACCTTTGCCCTCTTGACTTGACGAGGGTTATCGGTACGGGAGGGAGGGCT
GTTGAGGCTCATCCTGCGCAGCACCTCTTGCGCCGACCTCGTCGGGCTTG
ACCCCCGCGCCGTCTCGGTCGCAGCTCCGGCATCCATGCTCCCTCTCGGC
TCAACGCTCCTCCTTGCCTGTCCGTTAAGTAGCAGCGGTGGGAGCCCAAG
CAGCTTAAGGCCTTGTTGTCAACACCTAGTGTCGAGAAATATGATGCACC
CCACGCGCAGCAAAGGGAAAGTCCCCGTGCCTGGGCCGCCCTTGCGTACG
ACCTCCGATCGATGCAACTTGTAGATGCCTCGGCGGGAAAACGCTGCAGC
GCTTCCAAGTTGAGACGGCGACACTGCAGTACCGACTGCGGAGGCAGAGG
GAACTCGTGCGTTCTCGGGGCTTGAAGGGGAAGCGCAGTAGCCGTGTGTG
AGCGCTCTTGTTTGCCGTGGTGTGCCCGCCAAAAACACGGCACCCGGCCT
TTCCTTGCCCACATTTAAAAAAAAATCGAAAAAAAATAGTAGGACACATC
CCCGCTTGTTGGTGTTCGCCTTCCTGCCACTGGAACTCTAACTCGGGGGG
CACGCAACCTGGCATTTCGGTTGCCACAATTTGGCCCGGCCTTCTAAGTC
GCGTCTACGTCTAACTCCGTTTCCACGGGAGAGGCACGTCTATCCCCCAA
TATGGCGACTAGGCACGTCGTACAGTCGTCTAACGCAATGGGGGATGCGA
CTGGGTTACTGTTAAGGAGCTGTCTCGACGACTTAACAGGACGTTAGACG
CAGGGAAGGAGTAGCTCGCTCTCTTCCGCCTTCCGCCCTCCATCTCTTCT
CTCTCCAACCCTCTCTCCCCTCCGTTCTCCGTAGAAGTACCTCCTACCAA
AATGGAAGGAAGGATGTTTGCATGTTTGCACTCAAATTTTGAAAAATTTG
CCCGCCGAAAATGTTCCGCGCTCCGGCCAAGGCCCTCACGCCTTGACTCA
CGCCTCACGCCAACGCCGCCTCACACACTCCACACTCCACACTCCACACC
TACTTTACGGCCCCCCGAGTCCCGAGTCCCGAGCCCCGTTATGTCTTTGA
CCCCACCAGCATCGGCTACAACGCCAATGGCGGCGGTGTCGCTTACTACC
ACGACACACAACGCGTCCGTCGGAACGGCCTCAAAACGGCCTCCACCCCC
GTGTCCTTGGTCGGGACCAGCACATCTCCAGTCGTTGCTCCTGCTGCAGA
GGAGGCTGCTGCTGGAGCTGCTGGTGCTGCTGCTCACCCAGTGCCTCCGG
GAGGCACACAAGCACCAACATCTGGAGCGATGGACAAGTTTGTGCAGCCA
TATGTTCCAGGGAGTAATGAGGCTGCGCACATCTTCGTCTTGGCGAACAA
GCCTGCAGCCGCTGCCGCCGGTCGCCAGCGGAGGAGTGTTGCTGCGGCTC
CGGCCACGGGAGCAAGTGACAACAGCACAGGCAAGCGATCTCGAGGGGTG
AACGGACTTTCGTCCTCCAACCCGAAAACTATTTCGGCAAGCTCACGCTG
CAGGACTTTTCCGGGTGAGGGCCTCGTCGTTTCCGCGGGCGCCCTCTACT
GCGAACCGTGCGCCAAGCGCCTGGGGACTTGCCTCTCCACGATCAGGGCC
CATTGTGGACTCCTGAAGGACGGTAGTCACAAGGCGGAACCCAACCAGCA
CATGCAGAAGCTGGAGGTGCACTTGGCCGCAGAGTTCGAGGCGCCTAACA
GGAAGACTCGCTTCACGCAGTACTGCAACAAGAGGCGGGCCGTATACGGG
AAGACCGTCGATCCCGAGGTCAACGACAAGCGCTGCAAGGTGATCAGAAT
ATTTTTTTTCAATCGTCGACATTCTCTTTATTTTGGAACAGCACAGAACG
AGGTGAATTTTGCTCTGCATATCTTGATGTACTTCGCGACTAACCTTGTT
TAGACCATGTTATCCTATATAAGTGAACAACGACCAAATTTCTTCATTGG
TCAGCCATTATTGTGCGTACGCCAACAGCAGCAGCAGAGTAGTAGAGTGG
ACTTGCTGCAGTATTTCCCTTCAAGTCGTTTGCATACGGCTGTGTGAATT
TTCCATACAAGTCGAGCCAGCAGCAGATAAGGGGGTTACTCTTTGGCCGG
GCACACGGTTACGTAATGTGATGATGATTCCTGAATTCTCCTTCGCTCGG
GTTGTTTTTTCAATAAGAAGATTGGTTTGAAGTAGGCACCTGCTGTCCCC
TATTGTTTTGCTCTGGTTCTACCGTAATAGTTCCGCTTCTGGTTCTGGTG
CTTGCTCGGCCGCCTCACCTCCCATGTGCCTCACCCCCCACCTGTGCTTC
TGTTATATTCCAGCTAATCACTCAAGTCATGGGTGCCGGAATATCACTCT
CCAAGCTTGACCCTCTCCGGAGCATGTTCACCAGCCTCGGAGCAGACATG
GTGGGGTCATCGAAGTCGAAGGAGTACATCGGCTTCATCAACGAGGAGCA
GATTCGCTCCATTCGTCAGGACATCCTTGGCAAGGACATCGGTATTGCCA
TCG
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Coding sequence (CDS) from alignment at chr_00:10122994..10125546+

>Ec-00_006430.1 ID=Ec-00_006430.1|Name=Ec-00_006430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=699bp|location=Sequence derived from alignment at chr_00:10122994..10125546+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACAAGTTTGTGCAGCCATATGTTCCAGGGAGTAATGAGGCTGCGCA
CATCTTCGTCTTGGCGAACAAGCCTGCAGCCGCTGCCGCCGGTCGCCAGC
GGAGGAGTGTTGCTGCGGCTCCGGCCACGGGAGCAAGTGACAACAGCACA
GGCAAGCGATCTCGAGGGGTGAACGGACTTTCGTCCTCCAACCCGAAAAC
TATTTCGGCAAGCTCACGCTGCAGGACTTTTCCGGGTGAGGGCCTCGTCG
TTTCCGCGGGCGCCCTCTACTGCGAACCGTGCGCCAAGCGCCTGGGGACT
TGCCTCTCCACGATCAGGGCCCATTGTGGACTCCTGAAGGACGGTAGTCA
CAAGGCGGAACCCAACCAGCACATGCAGAAGCTGGAGGTGCACTTGGCCG
CAGAGTTCGAGGCGCCTAACAGGAAGACTCGCTTCACGCAGTACTGCAAC
AAGAGGCGGGCCGTATACGGGAAGACCGTCGATCCCGAGGTCAACGACAA
GCGCTGCAAGCTAATCACTCAAGTCATGGGTGCCGGAATATCACTCTCCA
AGCTTGACCCTCTCCGGAGCATGTTCACCAGCCTCGGAGCAGACATGGTG
GGGTCATCGAAGTCGAAGGAGTACATCGGCTTCATCAACGAGGAGCAGAT
TCGCTCCATTCGTCAGGACATCCTTGGCAAGGACATCGGTATTGCCATC
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Synonyms
The feature 'Ec-00_006430.1' has the following synonyms
Synonym
Esi0495_0012
Esi_0495_0012