Ec-00_005930.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005930.1
Unique NameEc-00_005930.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length360
Homology
[Close]
BLAST of Ec-00_005930.1 vs. uniprot
Match: A0A6H5KHX0_9PHAE (FAPb protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX0_9PHAE)

HSP 1 Score: 500 bits (1288), Expect = 2.030e-174
Identity = 330/359 (91.92%), Postives = 336/359 (93.59%), Query Frame = 1 
Query:  157 MPSREVGNLAVAAAFALFSAFLFFARDEAGAWRENFLHLPIGGSTAPIASNSEPYVPAVHLAGVTGDANSKEPPVASEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAKAAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTPLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVNVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFAEGVPAFLAS 1233
            MPSREVGNLAVAAAFALFSAFLFFARDEAGAWRENFL+LPIGGSTAPIASNS+PYVPAVHLAGVTGD NSK PPVASE   XXXXXXXXXXXXXXXXXXXXXXXXXXAEAKA   XXXXXXXXXXXXXXXXXXXXXXXXXXX             KTPLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFV VNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSI+REESVTLGWEGKDRLVVLVRDKEIGS+IDE+LPASVF+LFLGSDPVSPVAKTAFAEGVP FLAS
Sbjct:    1 MPSREVGNLAVAAAFALFSAFLFFARDEAGAWRENFLNLPIGGSTAPIASNSDPYVPAVHLAGVTGDGNSKGPPVASE--SXXXXXXXXXXXXXXXXXXXXXXXXXXAEAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLA----------KTPLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVTVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSIDREESVTLGWEGKDRLVVLVRDKEIGSIIDEALPASVFSLFLGSDPVSPVAKTAFAEGVPPFLAS 347
[Close]
BLAST of Ec-00_005930.1 vs. uniprot
Match: D7G2G9_ECTSI (Similar to Chalcone Isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G9_ECTSI)

HSP 1 Score: 394 bits (1013), Expect = 1.710e-134
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1 
Query:  622 KTPLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVNVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFAEGVPAFLAS 1233
            KTPLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVNVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFAEGVPAFLAS
Sbjct:   26 KTPLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVNVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFAEGVPAFLAS 229
[Close]
BLAST of Ec-00_005930.1 vs. uniprot
Match: A0A0G4GUV1_VITBC (Chalcone_isomerase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GUV1_VITBC)

HSP 1 Score: 149 bits (376), Expect = 3.840e-39
Identity = 85/201 (42.29%), Postives = 118/201 (58.71%), Query Frame = 1 
Query:  628 PLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVNVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFAEGVPAFLA 1230
            P++  ++D  TG+  P    F  +   +  LG G R K++    VNVY+VGLYVEPK A KAL S+ G   E L  D   Y  L G  +  K + L FAR+VGA KV DA +AVKGV  +V+ +F SL  +G+G SI + E++ +GW    RL VL+R +  G+V+D  LP + F L+LG  PVS  AK AF + V +  +
Sbjct:    4 PVAAVLKDKVTGIEFPCEATFPGTPK-MTLLGAGPRRKNLGIAKVNVYSVGLYVEPKEAAKALSSFKGESEESLMNDDRFYDTLLGK-EVPKLVLLKFARTVGAHKVADALSAVKGVEPEVVSEFCSLLEKGMGASIKKAETIAMGWTEDQRLDVLIRGQPAGTVVDAKLPKAFFELYLGKTPVSMEAKHAFVKRVASLFS 202
[Close]
BLAST of Ec-00_005930.1 vs. uniprot
Match: A0A835ZC45_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC45_9STRA)

HSP 1 Score: 156 bits (395), Expect = 8.060e-39
Identity = 95/216 (43.98%), Postives = 122/216 (56.48%), Query Frame = 1 
Query:  622 KTPLSPD-VRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVNVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFT-AVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFN--------------LFLGSDPVSPVAKTAFAEGVPA 1221
            +T   PD + +P TG+ L  T  F  S   L C+G G RVKSVA  +V VY + LYVEP GA +AL  Y G  P E ++D   Y  L     F  YL + FAR+VG  KVV+A T AV+GV  DVL  F+ +    +G S+ + + V +GWEG+ RL V+VR   +G V D  LP ++F               L+LGSDPVSP AK AFA GV A
Sbjct:  315 RTSTMPDTIVEPVTGIALAATASFGGSAQ-LRCVGAGARVKSVALASVKVYALALYVEPGGAARALARYEGVAPAERARDVGFYEELMKPAAFPSYLVMSFARNVGTPKVVEALTSAVQGVAPDVLKNFAGMLGAAMGPSMRKGDVVAMGWEGEGRLAVVVRGVRVGEVADAVLPGAIFKVNFDTSTVHFLAVRLYLGSDPVSPPAKAAFASGVSA 529
[Close]
BLAST of Ec-00_005930.1 vs. uniprot
Match: A0A0G4GWT2_9ALVE (Chalcone_isomerase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GWT2_9ALVE)

HSP 1 Score: 145 bits (366), Expect = 2.000e-37
Identity = 89/197 (45.18%), Postives = 119/197 (60.41%), Query Frame = 1 
Query:  628 PLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAF-VNVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFAEGV 1215
            PL+  + D ATGL       F SS   +  LG GVR K++   + VNVY+VGLYVEP  AR+ L  +   +  EL+K +  Y+ L    D  K +HL FARSVGA K+V+A T++ GV ++ L KFS L ++ +G SI  +E+VTL     D L V+VR K  GSV D  LP + F+L+LG +PVS  AK AFA  V
Sbjct:   31 PLAAILTDAATGLDFETDVSFPSSPK-MTLLGAGVRAKALLGPIAVNVYSVGLYVEPSKARQTLSGFKTIEEAELAKKEDFYKALMKE-DLPKAMHLKFARSVGASKIVEALTSLNGVPEESLSKFSKLLLDSIGSSIGYKETVTLSSSKPDTLDVIVRGKHAGSVRDSKLPKAFFDLYLGKNPVSSEAKKAFASRV 225
[Close]
BLAST of Ec-00_005930.1 vs. uniprot
Match: A0A835Z7E7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E7_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.900e-35
Identity = 86/198 (43.43%), Postives = 119/198 (60.10%), Query Frame = 1 
Query:  628 PLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVA-FVNVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVG-KSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFAEGV 1215
            P   D+ +PATG+VL  T  F  S   L C+G+GVR   V  F +V+VY +GLY++  GARKALK++     E+L++    Y  L   G F++Y+ L F R V   KV DA TAV+GV   ++D +  L    +G K     +++ LG+EGKDRLVV+   K  G+V    LPA+VF L+LG DP+ P AK A A+GV
Sbjct:  149 PRKTDLVEPATGIVLWPTDSFNGSPP-LTCVGLGVRTVPVLYFSSVHVYVMGLYIDAVGARKALKAFLPLPAEDLAQKPEFYSALLKPGVFTRYIVLAFNRKVSTLKVADALTAVEGVPPPIVDAYRRLLEGALGEKGARPGDTLALGFEGKDRLVVVANGKTHGAVRSTVLPAAVFKLYLGDDPIIPAAKRAVADGV 345
[Close]
BLAST of Ec-00_005930.1 vs. uniprot
Match: A0A7S2UYK7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYK7_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.110e-34
Identity = 77/173 (44.51%), Postives = 108/173 (62.43%), Query Frame = 1 
Query:  643 VRDPATGLVLPRTKQFASSKTG--LVCLGVGVRVKS-VAFVNVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVF 1152
            V +P TG+  P TK F+ + T   L   GVGVRVK+ V  + VNVY +GLYV+P  A +A   Y G+D +E++KD   +++L   G F+K +++ +AR+VG  KVVDA   V   +   LD F  L + G G +I   E++TLGWEGKD+LVV VRDK +G+V    L  +VF
Sbjct:   31 VTEPVTGIDFPVTKSFSLNSTSPTLTLTGVGVRVKALVGPLKVNVYGMGLYVDPSRAARAFSKYKGKDAKEVAKDDDFFKILHSPG-FAKAIYIDYARAVGVDKVVDALRLVPTEDTAALDYFCDLLVIGTGSTIGNRETMTLGWEGKDKLVVQVRDKTVGTVTSAKLVEAVF 202
[Close]
BLAST of Ec-00_005930.1 vs. uniprot
Match: A0A7S1JL13_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JL13_9ALVE)

HSP 1 Score: 120 bits (302), Expect = 4.150e-29
Identity = 66/148 (44.59%), Postives = 89/148 (60.14%), Query Frame = 1 
Query:  787 VEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFAEGVPAFLA 1230
            VEPK A KAL S+ G   E L  D   Y  L G  +  K + L FAR+VGA KV DA +AVKGV  +V+ +F SL  +G+G SI + E++ +GW    RL VL+R +  G+V+D  LP + F L+LG  PVS  AK AF + V +  +
Sbjct:    1 VEPKEASKALSSFKGESEESLMNDDRFYDTLLGK-EVPKLVLLKFARTVGAHKVADALSAVKGVEPEVVSEFCSLLEKGMGASIKKAETIAMGWTEDQRLDVLIRGQPAGTVVDAKLPKAFFELYLGKTPVSMEAKHAFVKRVASLFS 147
[Close]
BLAST of Ec-00_005930.1 vs. uniprot
Match: A0A835ZLC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLC9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 5.990e-22
Identity = 60/135 (44.44%), Postives = 77/135 (57.04%), Query Frame = 1 
Query:  895 FSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFN------------------------LFLGSDPVSPVAKTAFAEGVPAFL 1227
            + +YL L FAR V A KV DA TAV+GV  DVL  F+ L    +G +++  +++ LGWEGKDRLVV+VR K+ G V D +LP ++F                         L+LGSDPVSP AK AFA GV A  
Sbjct:  296 YPRYLLLSFARDVSAAKVTDALTAVQGVAPDVLKAFAHLLGSAIGGAVHAGDTIALGWEGKDRLVVVVRGKKAGEVKDAALPGAIFKRSVMPISDARPFCRCALLPPLRAQLYLGSDPVSPPAKAAFASGVSAIF 430
[Close]
BLAST of Ec-00_005930.1 vs. uniprot
Match: A0A3M2AK49_9BACT (Chalcone_isomerase domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2AK49_9BACT)

HSP 1 Score: 100 bits (248), Expect = 9.160e-20
Identity = 66/213 (30.99%), Postives = 101/213 (47.42%), Query Frame = 1 
Query:  637 PDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVNVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTA----------------VKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFAEGVPAFL 1227
            P V +P + +  PR   F   K  L  L VG+R K++  V V  Y  GLY++ + A  AL+ Y G  P++  K ++ YR L   GDFSK L  V  R V  + + +AF                  V   ++  L +F +   +     +     +   W    RLV  +  K +G V   +L  ++F+++LGSDP+S  AK AFA+ +P FL
Sbjct:  109 PTVEEPRSEVEFPRWMDFPGGKQPLHLLAVGLRTKTIFAVKV--YAFGLYLDARAAAAALRDYRGLRPKDRRKSRAFYRALLN-GDFSKGLRWVMTRDVDGEDIAEAFAESLEPRLEKLARSAKPEVVAADRAALARFKTFFSD----ELEEGTELVFAWHPGGRLVTRIGGKVMGEVKSHNLALALFDVYLGSDPISEDAKEAFADALPGFL 314
The following BLAST results are available for this feature:
BLAST of Ec-00_005930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHX0_9PHAE2.030e-17491.92FAPb protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G2G9_ECTSI1.710e-134100.00Similar to Chalcone Isomerase n=1 Tax=Ectocarpus s... [more]
A0A0G4GUV1_VITBC3.840e-3942.29Chalcone_isomerase domain-containing protein n=2 T... [more]
A0A835ZC45_9STRA8.060e-3943.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4GWT2_9ALVE2.000e-3745.18Chalcone_isomerase domain-containing protein n=1 T... [more]
A0A835Z7E7_9STRA1.900e-3543.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UYK7_9STRA1.110e-3444.51Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1JL13_9ALVE4.150e-2944.59Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A835ZLC9_9STRA5.990e-2244.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3M2AK49_9BACT9.160e-2030.99Chalcone_isomerase domain-containing protein n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:9443994..9448582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue4.1e-17
Seed eggNOG ortholog2880.D7FP06
Length1305
Hectar predicted targeting categorysignal peptide
Gene idEc-00_005930.1
EggNOG free text desc.Chalcone isomerase-like
EggNOG OGs2E0MF@1,2S81H@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005930Ec-00_005930Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 9443994..9448582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005930.1Ec-00_005930.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 9444061..9446297 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005930.1.4Ec-00_005930.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9443994..9444298 -
Ec-00_005930.1.3Ec-00_005930.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9445157..9445377 -
Ec-00_005930.1.2Ec-00_005930.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9445677..9446370 -
Ec-00_005930.1.1Ec-00_005930.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9448498..9448582 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0059303UTR:Ec-00_005930.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 9443994..9444060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005930.1CDS:Ec-00_005930.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 9444061..9444298 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0059305UTR:Ec-00_005930.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 9446298..9446370 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005930.1 ID=Ec-00_005930.1|Name=Ec-00_005930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=360bp
MPSREVGNLAVAAAFALFSAFLFFARDEAGAWRENFLHLPIGGSTAPIAS
NSEPYVPAVHLAGVTGDANSKEPPVASEPDDAAAAAAAAAAAAVESAAAA
AAAAAAAAEAKAAKAAEAKAAAAAVAAEAEAAAEAAAAAAAKATKPAKAK
AAGLAKTPLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFV
NVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKY
LHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESV
TLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFA
EGVPAFLAS*
back to top

spliced messenger RNA

>Ec-00_005930.1 ID=Ec-00_005930.1|Name=Ec-00_005930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1305bp|location=Sequence derived from alignment at chr_00:9443994..9448582- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GTGGGTGTGTGTTTGTCTATCCATGAGCATCGCTGGCGGCGGGCCTGGAG
CGTGAGGAGCACTTCCGTTCTGCCTGGTGTACACGGGTTCATTAAAAGCC
GCGCTAGAAGAGGAGAGGCTTTAACCGGCGGAGCGCCGTCACCGAGCACC
ATAAAAAAATGCCTTCGCGGGAGGTAGGAAACCTGGCGGTCGCCGCTGCG
TTCGCCCTCTTCTCCGCCTTCCTCTTCTTCGCCCGCGACGAGGCCGGCGC
TTGGCGAGAGAACTTCCTCCACCTTCCCATCGGCGGTTCCACCGCCCCTA
TCGCCTCCAACTCCGAGCCCTATGTCCCGGCCGTGCACCTCGCCGGCGTA
ACCGGGGACGCCAACAGCAAAGAGCCTCCGGTAGCGTCGGAACCAGATGA
TGCAGCGGCAGCAGCGGCAGCGGCGGCGGCAGCGGCGGTAGAATCAGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCTGAAGCAAAGGCGGCAAAG
GCAGCGGAGGCAAAGGCAGCAGCGGCAGCAGTGGCAGCGGAGGCGGAGGC
AGCGGCAGAGGCGGCGGCAGCAGCCGCAGCAAAGGCAACAAAACCAGCGA
AGGCAAAGGCAGCAGGCCTCGCCAAGACGCCGCTGTCGCCGGACGTCCGG
GACCCCGCGACGGGCTTGGTGTTGCCGAGAACAAAGCAGTTCGCGTCCTC
GAAAACGGGACTCGTCTGCCTCGGGGTGGGCGTGAGGGTCAAATCGGTCG
CCTTCGTTAATGTCAACGTCTACACGGTGGGGCTGTACGTCGAGCCGAAG
GGTGCGCGAAAAGCGCTCAAGAGTTACGCCGGCAGGGACCCCGAAGAGCT
GAGCAAGGACAAGTCGGTCTACCGCGTGCTGGGTGGGGCGGGCGATTTCT
CCAAGTACCTGCACCTCGTGTTCGCGCGGAGCGTCGGAGCGCAGAAAGTT
GTTGACGCGTTCACCGCCGTCAAGGGCGTGAACCAGGACGTTCTCGACAA
GTTTTCAAGCCTGACCATGGAGGGGGTCGGGAAGTCTATCAACAGGGAGG
AGTCGGTCACGCTGGGGTGGGAGGGCAAGGACAGGCTGGTGGTCTTGGTC
CGCGACAAGGAGATCGGCAGCGTCATCGACGAGTCCCTCCCTGCGTCGGT
GTTCAACCTTTTCTTGGGGTCCGACCCGGTCTCGCCGGTGGCGAAGACCG
CATTCGCGGAAGGCGTGCCCGCGTTCCTGGCAAGCTAATTTTGTTTCGAG
GGGGAAGGGGGGGGGGGGGTTGTCCCCGCCTGCGGGGACCCTGACTTTTG
TCTCT
back to top

protein sequence of Ec-00_005930.1

>Ec-00_005930.1 ID=Ec-00_005930.1|Name=Ec-00_005930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=360bp
MPSREVGNLAVAAAFALFSAFLFFARDEAGAWRENFLHLPIGGSTAPIAS
NSEPYVPAVHLAGVTGDANSKEPPVASEPDDAAAAAAAAAAAAVESAAAA
AAAAAAAAEAKAAKAAEAKAAAAAVAAEAEAAAEAAAAAAAKATKPAKAK
AAGLAKTPLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFV
NVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKY
LHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESV
TLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFA
EGVPAFLAS*
back to top

mRNA from alignment at chr_00:9443994..9448582-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005930.1 ID=Ec-00_005930.1|Name=Ec-00_005930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4589bp|location=Sequence derived from alignment at chr_00:9443994..9448582- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GTGGGTGTGTGTTTGTCTATCCATGAGCATCGCTGGCGGCGGGCCTGGAG
CGTGAGGAGCACTTCCGTTCTGCCTGGTGTACACGGTGCGTAGCCTGGGG
TTCAGTCTTTCTTTTTGTGTCTTCGTGTCGTGTGCGAGATAATGAGAAAA
AGGGGGGCGACACTACACGACGTTTTGAAATGTGCGCGATCCCGCATGTG
ATGTGATGAGGAGATTCAACAGGGGTGGTTGACCTCTTGTCTACTACACT
GCTGTCTACCATCTGTCTTGATCGCCTCGCCGATTTACTCCATCTATTCC
GGCTGTGTGCCGGCCCGCTTACCGTTTGCCTGCCCATTTGATCATTCCGT
GTTCTTTCTCATCGCTCTTGTGGGATGTCCGAATGGTAGACGAAGGTAGA
CAAGTAGACCATACCACACGACTACAACTGTATTGTAAAATGTACCTGTC
TCTCTGTTTCTCAGAGACCTGTCTTGTAGGAATTACATGTGTTTCCTGAA
CGTGAGGTTAAAGTGTGTGCGCTACAGCTATTTAGCTAGGAACATCGATC
CAACACTGCTCATGACTGCGTAGTCTGGAACAACAGTTTACTGGCAGCGT
TTTGTTGTGGATTAGAGTCCTGGGAGCAGGCTGCACCCCTATTTATATTT
ACAGAGTTCTTACAGCCTCCGTTTTCAAAAGTAAAGTATTTCAGACAAGG
GCGAGCGACGGCGACGATCGACGGAGCGACGGCGGGGCGATCGACGAAGG
CGGCCCAAGGCCGCCCGATCGACCGACCGACCGACCGACCCAACCCTACC
CTACCCAACCCTACCCAACCCTACCCAACCCTACCCAACCCTACCCAACC
CTACCCAACCCAACCCTACGGAACACAACACAACACAGCACAGCCCCAAC
CCCAACCCCAGCACCCCAACACAACACAACACAACACAACTCGTTCAACC
CCAACTCAACCCAACCCCCAACACAGTCGGGTGATGACGAAACCAACACC
AGAGCGAATACACAACCCCCAAAACCCGCCGGATCCCCGGTGAACGACTG
CAACACGCAGAAGGCGACACTTGTAACCACCCCGCCTCGTCAAGTCCTCT
TGAAGATAGAACCACATCCCAACGCGCAAAACACTCCGCCACAGCAGTTG
TTGTCATGGCACAATGTACCGAGGCGTAAGTAGTTAGCTAGAGCTGACGC
GTAGGGGCCGACCGAGCGATCACGAAGAAGGACGTACGAATCAGGCCGCC
CGATTGACCGCCCGACCGAACGACCGACCCGATCAACACAACCCTACCCA
ACCAAACCCTACTCCAGTAAGATTGTCTACATAGCAAGATAGAAATAGTG
GTTGGTGATAGACATTTGTGTTACTGCTGTGTGTTTTCGTCCCATGCCCA
GCACAAGTCTAGAAGCATGTACCTTGTCTACAGTGCTGCTGCATTTTGGT
GGGGCAAGTCTGCACCTTTGGTATATGCTAAGTAGTCCATGCGCCAACCG
ATGTCACACATGTGGTACCAGTGTTTGAGAATATTCCTATCCTGTAACCG
CGGGAGGCATTGCGGTTGGACCTGGGAGCGTCCGCAGGTACATAATTCAG
CAGAGATTGTACTGCTGTACCACGTGTTTTTTCTTGTTTTCAACACAAAC
ACGACTTTTCAGAACATTTGACAGCCATCAGCAGACAGCAAAAAGCGGAC
ACGGAACGTGTCGCTATTACCGGTGTGACACTAGCTTATTAAAGATAACG
ATGAACGTCACAGTTTGTTGCCGGGTTGTACATGTCCGTCCTTGTGCTCA
CTCCCCCATGGCGGACCGGGCTACGGCTTCAACGTGGTCGGTATGCCTTA
CGACATCCTACGTGAGATACAAACATGGTGATTGTGGCCGTGGGATAAAA
ACATGGTGGCTGTGCCCTGTCCCAAGGTCCAACGAACAGCTTGCGTCACT
ACTGTACACTTGCTTTACGAAGGACTTCTATTAACCCCGCCAATCCTGTT
GCCAGGTGGATGGGGTTTCTCGTAGTCTTGGGCGTTGTAAGAAAACACGT
TTCCGCTCAACGTCGCCAAACAATTTTTTTTTTGTTCAAACCCACACTAG
CCGATCGCCTAGGCTTTGGGGTCGTTGGTGACGAGCATATCTTCGCACGT
ATGCACCACAGTTCCTCGTTACACCGTGCGCTTCTTCGAAATTCGTTCAA
CCGGCAAAGCAGGGTTCATTAAAAGCCGCGCTAGAAGAGGAGAGGCTTTA
ACCGGCGGAGCGCCGTCACCGAGCACCATAAAAAAATGCCTTCGCGGGAG
GTAGGAAACCTGGCGGTCGCCGCTGCGTTCGCCCTCTTCTCCGCCTTCCT
CTTCTTCGCCCGCGACGAGGCCGGCGCTTGGCGAGAGAACTTCCTCCACC
TTCCCATCGGCGGTTCCACCGCCCCTATCGCCTCCAACTCCGAGCCCTAT
GTCCCGGCCGTGCACCTCGCCGGCGTAACCGGGGACGCCAACAGCAAAGA
GCCTCCGGTAGCGTCGGAACCAGATGATGCAGCGGCAGCAGCGGCAGCGG
CGGCGGCAGCGGCGGTAGAATCAGCGGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCAGCTGAAGCAAAGGCGGCAAAGGCAGCGGAGGCAAAGGCAGCAGC
GGCAGCAGTGGCAGCGGAGGCGGAGGCAGCGGCAGAGGCGGCGGCAGCAG
CCGCAGCAAAGGCAACAAAACCAGCGAAGGCAAAGGCAGCAGGCCTCGCC
AAGACGCCGCTGTCGCCGGACGTCCGGGACCCCGCGACGGGCTTGGTGTT
GCCGAGAACAAAGCAGTTCGCGTCCTCGAAAACGGGACTCGTCTGCCTCG
GGGTGGGCGTGAGGGTCAAATCGGTCGCCTTCGTTAATGTCAACGTCTAC
ACGGTGGTGAGTATTGTACGGCTCCGTTCCTGATAGGTTAGTCGGGTGGT
TGGTTGGTTGTCCTCTTCTATCTGTGTCGTGCCTTATTGCTCGACAGCTC
GTTCACTTGTCGAAATTTTCTCAGGGGTGCAAGTCTTGCTGTACTCGTGT
ACCGCCTTGCCCACATTCCGCGCATATGGCAAGCACCGAGCGCCATCGGA
ACGGACGACGCCTCCTCGTTCGCATCGTCCTGAGTGTGTTAACCATTCCA
CGTCCGTTGCCGTACCTTCGTTGCTTTGCGCATCCCCTGCGTGCCGCGCG
TGCAGGGGCTGTACGTCGAGCCGAAGGGTGCGCGAAAAGCGCTCAAGAGT
TACGCCGGCAGGGACCCCGAAGAGCTGAGCAAGGACAAGTCGGTCTACCG
CGTGCTGGGTGGGGCGGGCGATTTCTCCAAGTACCTGCACCTCGTGTTCG
CGCGGAGCGTCGGAGCGCAGAAAGTTGTTGACGCGTTCACCGCCGTCAAG
GGCGTGAACCAGGACGTTCTCGACAAGTGCGTTTCAGGGATCGGGGGGTA
AACCTTATTATCATGGCACACCGTTTTCGTTAGGCCACGGACCTCGCATC
CCCAGTACGGAGCACGCCCGGCAGGTTTCTTGTGCGAACCAACTCCTACG
TGGGAGGGGAGCGGGGAGGCTGCGTTGTATTATAGCTTAATTTCCCTCTC
TGAGCGCATTAAGCACGTATCTGTCTTGTCTGTCTCACAAGGGACGACGG
GAGCAACCCTCGCATGTCATATCGCATCCATTATTGTTGTGGTCGTTACT
TGCTGTGTTCGGGTTTGACACACCGCTCCGACCCGTGCCCGGTGCCTTCT
GACAGCCGTACCGTCCCGAGTACCGAACCGCCTTCCTCGGTAAAGGCTAA
TTGTAGAGCTACAGAGCTATGTGGGTGGTAGGTCTTCCCCCCCCCCCCGA
TCGGTCGTGGTTGTTTGTGTCCTCTCTTGCTTCTACTTGCTTGTGTCGAA
TTGCGTTCCACCGTTTTTCGTCCACCACTCACTGACCCTCCCCCGCGACG
GCGTCTCTCTTTCGTCTTGCCGTGGTACGCAGAACACTTGATCCAAAAAA
GTGCAACGCAGCGTACACACTCATTCGCCGTTAGTGTCACGAAGTACGTA
CATGCTTCCGCACCAAAAGCAGCAACAACAACGCCTGTTTACAAAGACCG
ACCGGCATGACCCCAAGCTGAAAAGAAAAACGTTGCAGAATAGTTTTTAC
GTGTTCCCCCGTATGCTTCCACACCTACATACCCCGCGATGATGTCTACG
TTCCCAAAACAGAGGGACACAGATTGTGGGCTGAAAACTGTGTGTAATGT
TTTTGTTTTATCGCAAAAACGTCGCTTCGCCCAGGTTTTCAAGCCTGACC
ATGGAGGGGGTCGGGAAGTCTATCAACAGGGAGGAGTCGGTCACGCTGGG
GTGGGAGGGCAAGGACAGGCTGGTGGTCTTGGTCCGCGACAAGGAGATCG
GCAGCGTCATCGACGAGTCCCTCCCTGCGTCGGTGTTCAACCTTTTCTTG
GGGTCCGACCCGGTCTCGCCGGTGGCGAAGACCGCATTCGCGGAAGGCGT
GCCCGCGTTCCTGGCAAGCTAATTTTGTTTCGAGGGGGAAGGGGGGGGGG
GGGTTGTCCCCGCCTGCGGGGACCCTGACTTTTGTCTCT
back to top

Coding sequence (CDS) from alignment at chr_00:9443994..9448582-

>Ec-00_005930.1 ID=Ec-00_005930.1|Name=Ec-00_005930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1080bp|location=Sequence derived from alignment at chr_00:9443994..9448582- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCTTCGCGGGAGGTAGGAAACCTGGCGGTCGCCGCTGCGTTCGCCCT
CTTCTCCGCCTTCCTCTTCTTCGCCCGCGACGAGGCCGGCGCTTGGCGAG
AGAACTTCCTCCACCTTCCCATCGGCGGTTCCACCGCCCCTATCGCCTCC
AACTCCGAGCCCTATGTCCCGGCCGTGCACCTCGCCGGCGTAACCGGGGA
CGCCAACAGCAAAGAGCCTCCGGTAGCGTCGGAACCAGATGATGCAGCGG
CAGCAGCGGCAGCGGCGGCGGCAGCGGCGGTAGAATCAGCGGCGGCGGCG
GCGGCGGCGGCGGCGGCGGCAGCTGAAGCAAAGGCGGCAAAGGCAGCGGA
GGCAAAGGCAGCAGCGGCAGCAGTGGCAGCGGAGGCGGAGGCAGCGGCAG
AGGCGGCGGCAGCAGCCGCAGCAAAGGCAACAAAACCAGCGAAGGCAAAG
GCAGCAGGCCTCGCCAAGACGCCGCTGTCGCCGGACGTCCGGGACCCCGC
GACGGGCTTGGTGTTGCCGAGAACAAAGCAGTTCGCGTCCTCGAAAACGG
GACTCGTCTGCCTCGGGGTGGGCGTGAGGGTCAAATCGGTCGCCTTCGTT
AATGTCAACGTCTACACGGTGGGGCTGTACGTCGAGCCGAAGGGTGCGCG
AAAAGCGCTCAAGAGTTACGCCGGCAGGGACCCCGAAGAGCTGAGCAAGG
ACAAGTCGGTCTACCGCGTGCTGGGTGGGGCGGGCGATTTCTCCAAGTAC
CTGCACCTCGTGTTCGCGCGGAGCGTCGGAGCGCAGAAAGTTGTTGACGC
GTTCACCGCCGTCAAGGGCGTGAACCAGGACGTTCTCGACAAGTTTTCAA
GCCTGACCATGGAGGGGGTCGGGAAGTCTATCAACAGGGAGGAGTCGGTC
ACGCTGGGGTGGGAGGGCAAGGACAGGCTGGTGGTCTTGGTCCGCGACAA
GGAGATCGGCAGCGTCATCGACGAGTCCCTCCCTGCGTCGGTGTTCAACC
TTTTCTTGGGGTCCGACCCGGTCTCGCCGGTGGCGAAGACCGCATTCGCG
GAAGGCGTGCCCGCGTTCCTGGCAAGCTAA
back to top
Synonyms
The feature 'Ec-00_005930.1' has the following synonyms
Synonym
Esi0475_0007
Esi_0475_0007
CHI-like