Ec-00_005880.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005880.1
Unique NameEc-00_005880.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length50
Homology
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BLAST of Ec-00_005880.1 vs. uniprot
Match: D7G2E6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2E6_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 5.660e-28
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 MMWANIWKLLGATMLPMFTAGTGLGMTSTTEDGGVIAVRDGVVVQMSSW 147
            MMWANIWKLLGATMLPMFTAGTGLGMTSTTEDGGVIAVRDGVVVQMSSW
Sbjct:    1 MMWANIWKLLGATMLPMFTAGTGLGMTSTTEDGGVIAVRDGVVVQMSSW 49
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BLAST of Ec-00_005880.1 vs. uniprot
Match: D7FSJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ7_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 5.670e-14
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    4 MWANIWKLLGATMLPMFTAGTGLGMTSTTEDGGVIAVRDGVVVQ 135
            MWANIW++LG TM+P+FT GTGL M S  ED GVIAVRDGVVVQ
Sbjct:   20 MWANIWQILGVTMIPIFTVGTGLSMASRAEDAGVIAVRDGVVVQ 63
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BLAST of Ec-00_005880.1 vs. uniprot
Match: A0A6H5L7B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7B0_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.940e-8
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    4 MWANIWKLLGATMLPMFTAGTGLGMTSTTEDGGVIAVRDGVVVQ 135
            MWA++ +++GATM+ M TAGTGL M S T +GGVI VR GVVVQ
Sbjct:    1 MWASVRRMVGATMVSMLTAGTGLHMESVTANGGVIDVRHGVVVQ 44
The following BLAST results are available for this feature:
BLAST of Ec-00_005880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2E6_ECTSI5.660e-28100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSJ7_ECTSI5.670e-1475.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7B0_9PHAE1.940e-863.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:9377728..9378491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length150
Hectar predicted targeting categorysignal peptide
Gene idEc-00_005880.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005880Ec-00_005880Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 9348269..9392786 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005880.1.3Ec-00_005880.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9377728..9377742 -
Ec-00_005880.1.2Ec-00_005880.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9378015..9378092 -
Ec-00_005880.1.1Ec-00_005880.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9378435..9378491 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005880.1CDS:Ec-00_005880.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 9377728..9377742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005880.1Ec-00_005880.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 9377728..9378491 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005880.1 ID=Ec-00_005880.1|Name=Ec-00_005880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=50bp
MMWANIWKLLGATMLPMFTAGTGLGMTSTTEDGGVIAVRDGVVVQMSSW*
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spliced messenger RNA

>Ec-00_005880.1 ID=Ec-00_005880.1|Name=Ec-00_005880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=150bp|location=Sequence derived from alignment at chr_00:9377728..9378491- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTGGGCAAACATATGGAAACTGTTGGGAGCCACCATGCTTCCAAT
GTTTACGGCTGGAACTGGGCTGGGTATGACAAGTACCACGGAAGACGGAG
GCGTAATCGCGGTTCGAGATGGAGTCGTGGTGCAGATGTCGTCGTGGTGA
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protein sequence of Ec-00_005880.1

>Ec-00_005880.1 ID=Ec-00_005880.1|Name=Ec-00_005880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=50bp
MMWANIWKLLGATMLPMFTAGTGLGMTSTTEDGGVIAVRDGVVVQMSSW*
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mRNA from alignment at chr_00:9377728..9378491-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005880.1 ID=Ec-00_005880.1|Name=Ec-00_005880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=764bp|location=Sequence derived from alignment at chr_00:9377728..9378491- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGTGGGCAAACATATGGAAACTGTTGGGAGCCACCATGCTTCCAAT
GTTTACGGTAAGTGCAAGCGATTGCCATCGTCAAAAAATATACCGACAAT
ATCGCGGCCTCTGATTATATGTGGACAGTGCTTGAGTTTGGGGCCACCAT
GGTTGCCTGTTCGCCTCTCCCAAACTCAGCATGGACTGGTGTTTCCCTGT
GGTTTATCTCTGCTTACCCAGGGTCGAGAGCCCGCAAGGCGGTTTCCTTA
GTGAGGTGTACGTATTCAAATGCCGCAATGGATCGGAAAGAGTTGAAGGC
AGGGAGGACTCATATGGAATTTGCTCCTGGTGCAGTAATTGCCGTTCGCC
CATACCTATATGTTTGCTTGAAAGAAGCCGCTCACAACAACTCCAACAGG
CTGGAACTGGGCTGGGTATGACAAGTACCACGGAAGACGGAGGCGTAATC
GCGGTTCGAGATGGAGTCGTGGTGCAGGTATGTCGGACATATTTGTGCCA
CCCTCTACAGTAGTCAGACGATCGCGTCCAACACGGGAAATTCTCTCCAT
TTCTTCATCATCTCGTTGCTTGGCTACAACCTTCTTGTTTCGCTGTGCAT
GGTGTTCCTTATGGTTCCAGAGATAAGTGTTTGGGTTCCGGGCCATTTTG
GTCGTTCTTGCTTCTTGCACCAGGGAACTTGTTGTTGGTCTTCCTGAGCT
CGTGGAATATATCGCATATTGCTCCCCCTTTCTGCCTTCTGCTCCGCAGA
TGTCGTCGTGGTGA
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Coding sequence (CDS) from alignment at chr_00:9377728..9378491-

>Ec-00_005880.1 ID=Ec-00_005880.1|Name=Ec-00_005880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=150bp|location=Sequence derived from alignment at chr_00:9377728..9378491- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGTGGGCAAACATATGGAAACTGTTGGGAGCCACCATGCTTCCAAT
GTTTACGGCTGGAACTGGGCTGGGTATGACAAGTACCACGGAAGACGGAG
GCGTAATCGCGGTTCGAGATGGAGTCGTGGTGCAGATGTCGTCGTGGTGA
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Synonyms
The feature 'Ec-00_005880.1' has the following synonyms
Synonym
Esi0472_0008
Esi_0472_0008