Ec-00_005870.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005870.2
Unique NameEc-00_005870.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length110
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_005870.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:9368461..9371832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length2826
Hectar predicted targeting categoryother localisation
Gene idEc-00_005870.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005870Ec-00_005870Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 9368461..9371832 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005870.2.1Ec-00_005870.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9368461..9368495 +
Ec-00_005870.2.2Ec-00_005870.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9369042..9371832 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0058705UTR:Ec-00_005870.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 9368461..9368495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005870.2CDS:Ec-00_005870.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 9371344..9371673 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0058703UTR:Ec-00_005870.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 9371674..9371832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005870.2Ec-00_005870.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 9371344..9371673 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005870.2 ID=Ec-00_005870.2|Name=Ec-00_005870.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=110bp
MARTLDPNIAPQATNRMNVHECEKTFVRPTSEVNGAPTTKLRGGGVPRVT
YAGYRHPAAQGTWRNKIKTKDSPKHPEEVEIIMFSPPVRRKTKSNKTPSC
SPIPVSNMN*
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spliced messenger RNA

>Ec-00_005870.2 ID=Ec-00_005870.2|Name=Ec-00_005870.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2826bp|location=Sequence derived from alignment at chr_00:9368461..9371832+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTTTATGCTACCAGGACGGGATGAGGCAATCCTGGTGTGTCCGCC
TGGTGTGCCGCCCGGTGTGTGTGTGTGTGTGTCGCTCTCGTCCCGGCTCT
CTTGTCTCGCCGCACCACTCGCGCACCCGCAATATCACCCCAACTCTTCG
TCTCGCACTGCATATCGACGCATGTGTCTGGTGGTATTCTTGGTTCAATA
ACCTGCTGTACCCACATGTGTGCTTTTCTTGTATCATGGCCTCTGACTCT
GTCTGTACGTTACACTTCGAAGCATGCTGGTGCCACTGCGCTGCTGTTAC
CCACTGCGTCGGTGTACAGCAGTAGTCTGCCTGGGCACATACTACTTCTG
CGTCGCCGAAACTACTGCTTATCTCCGAAACCTGCTGTAATATGTCAGTC
AAGTCGGCAGCATTGGTAAATCGTTTTTTTTGGTAATCTGACATGAATAC
CATGTACACAATTTGTACACCATATATTTATATTTTCGCAGTCATGCGTT
GTGCGTGTTATCCACAGCTGCAGCCATTCTGCCAGCGTACGATCCCTGTG
AGACAGGAGGCGGATTGTTTGGTACAGCAGTACAATGTATTCGTCAGAAT
ACCCTCCACCACCCTGCGGCTATTGTCGTCACCAAATGTGCGCGGCCACG
AAGCGAGAAAAATACTGGTAGGTTTGATCCTAGACCTACCGCTCTCTGTA
ATAGCCCCGCACCCGCCAATTTTCGAGGTGCGAATGCTACAACATTTGAC
TTGAGCGTCCCGCAAACGTGGCCACTTTTTTTACGCCTTCAAGGCGAAAA
AGCCGCTGCAGGGGGCGATCGCACGTATTGCAGCCGGAAGAGCAGATTAA
GAAATGGTGTCTTCCTCGCGTGACCGAGTGGACGGCTGGTAGAGGAAAGG
CCTTCCTGAGAGCACAGGACTCAGCTGGCGCGAAAGCAGAACTCGACAAC
GAGGATACAGCGCGGAGAAACGGGGTACCGACTACGGCATTCTGGAGGAC
TTCAACAACGAAATAGTGAAGGTGATCTCCGAACGCCAGAATCGATTCAG
GCAGCCAACCTCTTTGATTTTTCTTCTCGCCACAGAACGAGCTTGCACGA
TGATATCTTAATCCTGTTCTCCGCTGGCATCGGTAGGAAGGAACCGCCTT
TTCTGAGCTATCCCACGCCCCCATCATAGTGTGCCATCTGCCAACGTTGT
TGCTACCTTGTCTCGAGTGCTTGCGCAAAAAAATAAATCGTTTACAGTAG
CAGTATTGCCGTGCAATTTCCGCCCACCCGGTCCCCCCCCGATCGCCCTT
CTCGCTTATTTTTGCGACTGTTAACATGTCGCAGGTTGACGGAGCGGTGG
AGGAATATCTCGCAGCATGAGGGAGGGATGAGAGCGAGAGGGAATTGGGT
GGGGATATGGGGGGGCTCGTTGCTGTGGGGGTGATCCAGGTGGCGCACCT
GCTTCATCGCTAAACATTTCTGGGACACATCGTTTAGCACAACGTGTTTT
CGATACCTTCGGGTTTTGGCGTCCCTTGCATTCGTACTTGGTTATGCATG
TCGATGTGGTTCCTGGAAGGCCGAAGCACTTGCCATTCTAGGTTTGAAAG
GACGGGGGGGACGGTACGGTGGCAACTTTTGTTTTTGTTTCACGCCACTC
GTAAAACCGTGGGATACTTGTTTCGTAAAAGGCGAAGAAAGCATTGGTAC
GTTGCTTTGTGCGTGCTACACGCAATAAATATTTGTAGGTAAAGTTCCTC
TTAAGGAAACAAGCATTGCATAAGAATTGAATGACACCTGCTGAAATGTA
AGTGCAAAAATGTTTGGGGCAGCGTCACATGCGTGCGTACTTTGCGGAGC
AGGAAGGAGAGCTGAGCCCATGCTCCAAAATATACTTCGGCCTGACACCG
ATGCCGGGCGACTTTTTTTTTTGCCCTGTAGTAGCCCGTTTGACGAACGA
CCATTCAGCATGGCTATGTGTATGGTCCATACAACGTCCGTGTTGTGTGT
CTCGTTGCAAAAAATCGTGCATTTTCTGGAAACGTAGTGTGTTTTTGGAG
GTAACTCCCAGCTTGTAAAGTTGTGTGGTCCATACAACGTCCGTGTTGTG
TCTCGCTGCTCTCCTTGTGCAGTTTCTTTTTTGGGGTGTGTTTTTTTTTT
GAGGTCGTGTGGCCGCTGTATCGAACGCGGCGAAATATTCGCTTCGGCAA
GCATGTGGTCACTTGACGATTGAATACAGCATCTAGCGTTTTTTGTTTTG
TCTTTCAACAGCAGTAGCTTCGCAATTATATGATAAAGTGTACTACTACA
AGAACAGACTAAGAGGGCCCACCCACAGCCGTGCCGGATGGCACGCACGC
TTGATCCTAACATCGCACCGCAAGCTACCAACAGAATGAATGTGCATGAG
TGCGAAAAAACGTTTGTCCGTCCGACGTCGGAAGTCAACGGAGCACCAAC
TACGAAGTTGAGGGGGGGGGGAGTTCCCCGGGTCACCTACGCGGGGTATC
GCCACCCTGCCGCACAAGGCACGTGGCGAAACAAAATAAAAACAAAAGAT
TCTCCAAAACATCCGGAAGAAGTGGAAATAATCATGTTCTCCCCCCCCGT
GAGACGCAAAACCAAGTCGAACAAAACACCAAGCTGCAGCCCCATCCCTG
TATCAAACATGAACTAACCTGAACGGCACCGACACAGCAAAAACAAAAAG
AGAAAAAAAACACATACGTACGCACGTACGCACGTCTCCGCCCTGCAAGC
GGGCAGGCGAGTCGCGCCTACGACTCCCGCATCCTGAATGTCTACGCATC
TATACCACGCCCTTGTCCCGACCCCC
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protein sequence of Ec-00_005870.2

>Ec-00_005870.2 ID=Ec-00_005870.2|Name=Ec-00_005870.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=110bp
MARTLDPNIAPQATNRMNVHECEKTFVRPTSEVNGAPTTKLRGGGVPRVT
YAGYRHPAAQGTWRNKIKTKDSPKHPEEVEIIMFSPPVRRKTKSNKTPSC
SPIPVSNMN*
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mRNA from alignment at chr_00:9368461..9371832+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005870.2 ID=Ec-00_005870.2|Name=Ec-00_005870.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3372bp|location=Sequence derived from alignment at chr_00:9368461..9371832+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGTTTATGCTACCAGGACGGGATGAGGCAATGCAAAAAGGGATTCC
CTAAGGGCCGTTTTAATCGTTTCCAAATCTCTGTTCCAAATTTCCAAACT
ACGGTTCCAAATATTTGGAAGCCAGCAAGATTCGTTTCAAACGCGCTGCA
CGGCAACTTTCCAAATAAATCTCGCCGCGTGTGATGGCGAGTGGGCATGC
GCCTATAATCCCACCACGCACTCCACAGACAACGTCCCCACACGCGCGAC
ACCACGGGAGGGCCCAACATAGATAGGGTTAGTGGTCACCAAGGGCAAAT
CCCGGCTGGATGCAGCGAACAGGGCGATTAACGGCGCTGCTGTAGGTCCA
GCCGCTTTCGGTTTTCCGTGCTCGGCAGGCCGCCAGACAACACCTCAGGC
CAAGGCCAGCAAAGGCGAAGCAGCAAGATGCTGAGAGCATGTCCTCCTTG
CTGGATATCGTCAGCCAGGTTGTTGAAAGGAGAAGCCATCATGTCTCGGG
CCTCGAGGTTGCAGCAGCAGGTGTGTGAGAAGCTACTTCTGAAGTAGTCT
GTCTCTCTCGTCATCTGATTATGTATGTCAGCCTGGTGTGTCCGCCTGGT
GTGCCGCCCGGTGTGTGTGTGTGTGTGTCGCTCTCGTCCCGGCTCTCTTG
TCTCGCCGCACCACTCGCGCACCCGCAATATCACCCCAACTCTTCGTCTC
GCACTGCATATCGACGCATGTGTCTGGTGGTATTCTTGGTTCAATAACCT
GCTGTACCCACATGTGTGCTTTTCTTGTATCATGGCCTCTGACTCTGTCT
GTACGTTACACTTCGAAGCATGCTGGTGCCACTGCGCTGCTGTTACCCAC
TGCGTCGGTGTACAGCAGTAGTCTGCCTGGGCACATACTACTTCTGCGTC
GCCGAAACTACTGCTTATCTCCGAAACCTGCTGTAATATGTCAGTCAAGT
CGGCAGCATTGGTAAATCGTTTTTTTTGGTAATCTGACATGAATACCATG
TACACAATTTGTACACCATATATTTATATTTTCGCAGTCATGCGTTGTGC
GTGTTATCCACAGCTGCAGCCATTCTGCCAGCGTACGATCCCTGTGAGAC
AGGAGGCGGATTGTTTGGTACAGCAGTACAATGTATTCGTCAGAATACCC
TCCACCACCCTGCGGCTATTGTCGTCACCAAATGTGCGCGGCCACGAAGC
GAGAAAAATACTGGTAGGTTTGATCCTAGACCTACCGCTCTCTGTAATAG
CCCCGCACCCGCCAATTTTCGAGGTGCGAATGCTACAACATTTGACTTGA
GCGTCCCGCAAACGTGGCCACTTTTTTTACGCCTTCAAGGCGAAAAAGCC
GCTGCAGGGGGCGATCGCACGTATTGCAGCCGGAAGAGCAGATTAAGAAA
TGGTGTCTTCCTCGCGTGACCGAGTGGACGGCTGGTAGAGGAAAGGCCTT
CCTGAGAGCACAGGACTCAGCTGGCGCGAAAGCAGAACTCGACAACGAGG
ATACAGCGCGGAGAAACGGGGTACCGACTACGGCATTCTGGAGGACTTCA
ACAACGAAATAGTGAAGGTGATCTCCGAACGCCAGAATCGATTCAGGCAG
CCAACCTCTTTGATTTTTCTTCTCGCCACAGAACGAGCTTGCACGATGAT
ATCTTAATCCTGTTCTCCGCTGGCATCGGTAGGAAGGAACCGCCTTTTCT
GAGCTATCCCACGCCCCCATCATAGTGTGCCATCTGCCAACGTTGTTGCT
ACCTTGTCTCGAGTGCTTGCGCAAAAAAATAAATCGTTTACAGTAGCAGT
ATTGCCGTGCAATTTCCGCCCACCCGGTCCCCCCCCGATCGCCCTTCTCG
CTTATTTTTGCGACTGTTAACATGTCGCAGGTTGACGGAGCGGTGGAGGA
ATATCTCGCAGCATGAGGGAGGGATGAGAGCGAGAGGGAATTGGGTGGGG
ATATGGGGGGGCTCGTTGCTGTGGGGGTGATCCAGGTGGCGCACCTGCTT
CATCGCTAAACATTTCTGGGACACATCGTTTAGCACAACGTGTTTTCGAT
ACCTTCGGGTTTTGGCGTCCCTTGCATTCGTACTTGGTTATGCATGTCGA
TGTGGTTCCTGGAAGGCCGAAGCACTTGCCATTCTAGGTTTGAAAGGACG
GGGGGGACGGTACGGTGGCAACTTTTGTTTTTGTTTCACGCCACTCGTAA
AACCGTGGGATACTTGTTTCGTAAAAGGCGAAGAAAGCATTGGTACGTTG
CTTTGTGCGTGCTACACGCAATAAATATTTGTAGGTAAAGTTCCTCTTAA
GGAAACAAGCATTGCATAAGAATTGAATGACACCTGCTGAAATGTAAGTG
CAAAAATGTTTGGGGCAGCGTCACATGCGTGCGTACTTTGCGGAGCAGGA
AGGAGAGCTGAGCCCATGCTCCAAAATATACTTCGGCCTGACACCGATGC
CGGGCGACTTTTTTTTTTGCCCTGTAGTAGCCCGTTTGACGAACGACCAT
TCAGCATGGCTATGTGTATGGTCCATACAACGTCCGTGTTGTGTGTCTCG
TTGCAAAAAATCGTGCATTTTCTGGAAACGTAGTGTGTTTTTGGAGGTAA
CTCCCAGCTTGTAAAGTTGTGTGGTCCATACAACGTCCGTGTTGTGTCTC
GCTGCTCTCCTTGTGCAGTTTCTTTTTTGGGGTGTGTTTTTTTTTTGAGG
TCGTGTGGCCGCTGTATCGAACGCGGCGAAATATTCGCTTCGGCAAGCAT
GTGGTCACTTGACGATTGAATACAGCATCTAGCGTTTTTTGTTTTGTCTT
TCAACAGCAGTAGCTTCGCAATTATATGATAAAGTGTACTACTACAAGAA
CAGACTAAGAGGGCCCACCCACAGCCGTGCCGGATGGCACGCACGCTTGA
TCCTAACATCGCACCGCAAGCTACCAACAGAATGAATGTGCATGAGTGCG
AAAAAACGTTTGTCCGTCCGACGTCGGAAGTCAACGGAGCACCAACTACG
AAGTTGAGGGGGGGGGGAGTTCCCCGGGTCACCTACGCGGGGTATCGCCA
CCCTGCCGCACAAGGCACGTGGCGAAACAAAATAAAAACAAAAGATTCTC
CAAAACATCCGGAAGAAGTGGAAATAATCATGTTCTCCCCCCCCGTGAGA
CGCAAAACCAAGTCGAACAAAACACCAAGCTGCAGCCCCATCCCTGTATC
AAACATGAACTAACCTGAACGGCACCGACACAGCAAAAACAAAAAGAGAA
AAAAAACACATACGTACGCACGTACGCACGTCTCCGCCCTGCAAGCGGGC
AGGCGAGTCGCGCCTACGACTCCCGCATCCTGAATGTCTACGCATCTATA
CCACGCCCTTGTCCCGACCCCC
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Coding sequence (CDS) from alignment at chr_00:9368461..9371832+

>Ec-00_005870.2 ID=Ec-00_005870.2|Name=Ec-00_005870.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=330bp|location=Sequence derived from alignment at chr_00:9368461..9371832+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCACGCACGCTTGATCCTAACATCGCACCGCAAGCTACCAACAGAAT
GAATGTGCATGAGTGCGAAAAAACGTTTGTCCGTCCGACGTCGGAAGTCA
ACGGAGCACCAACTACGAAGTTGAGGGGGGGGGGAGTTCCCCGGGTCACC
TACGCGGGGTATCGCCACCCTGCCGCACAAGGCACGTGGCGAAACAAAAT
AAAAACAAAAGATTCTCCAAAACATCCGGAAGAAGTGGAAATAATCATGT
TCTCCCCCCCCGTGAGACGCAAAACCAAGTCGAACAAAACACCAAGCTGC
AGCCCCATCCCTGTATCAAACATGAACTAA
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Synonyms
The feature 'Ec-00_005870.2' has the following synonyms
Synonym
Esi472_0018
Esi_472_0018