Ec-00_005780.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005780.1
Unique NameEc-00_005780.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length252
Homology
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BLAST of Ec-00_005780.1 vs. uniprot
Match: A0A6H5JI65_9PHAE (RRF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI65_9PHAE)

HSP 1 Score: 441 bits (1135), Expect = 2.620e-151
Identity = 243/251 (96.81%), Postives = 245/251 (97.61%), Query Frame = 2 
Query:   26 MRASVFTAAASAAAVALCSGVSGFVFAPPLAAKRAGVPTTGKASPCASTAPRQRWTSSLKMAADEFDGDAVMASAQERMDKSVESVRLNLETLRTGRANPKILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQEADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDTVKKAEKAKNLGKDQSKDAQDAIQKLTDKTTKTIDEKVAAKEKDILKV 778
            MRASVFTAAASAAAVALCSGVSGFVFAPPL AKRAG PTTGKAS CASTAPR RW+SSLKMAADEFDGDAV+ASAQERMDKSVESVRLNLETLRTGRANPKILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQEADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAK LGEEGKVAIRNIRREAVDTVKKAEKAKNLGKDQSKD QDAIQKLTDKTTKTIDEKVAAKEKDILKV
Sbjct:    1 MRASVFTAAASAAAVALCSGVSGFVFAPPLPAKRAGAPTTGKASACASTAPRLRWSSSLKMAADEFDGDAVLASAQERMDKSVESVRLNLETLRTGRANPKILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQEADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKSLGEEGKVAIRNIRREAVDTVKKAEKAKNLGKDQSKDVQDAIQKLTDKTTKTIDEKVAAKEKDILKV 251
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BLAST of Ec-00_005780.1 vs. uniprot
Match: B7GAC1_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GAC1_PHATC)

HSP 1 Score: 207 bits (526), Expect = 4.050e-60
Identity = 107/181 (59.12%), Postives = 142/181 (78.45%), Query Frame = 2 
Query:  236 VMASAQERMDKSVESVRLNLETLRTGRANPKILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQEADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDTVKKAEKAKNLGKDQSKDAQDAIQKLTDKTTKTIDEKVAAKEKDILKV 778
            V   A +RM KSV+SVRLNL+++RTGRA+ +ILDRV V+ YG ETPLNQ+A++   SA  L ++ YD T L +I  AI E+DLGLT NNDG++IR+N+P +TEDRRKE+ K  K +GEEGKVA+RNIRR+ +DT+KK EK+ ++G+D+ KD QD +QKLTDK  K IDE V AKEK+++KV
Sbjct:   45 VTDDASDRMAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQLSIDPYDKTSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEGKVAVRNIRRDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEVMKV 225
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BLAST of Ec-00_005780.1 vs. uniprot
Match: A0A7S2S100_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S100_9STRA)

HSP 1 Score: 204 bits (519), Expect = 6.990e-59
Identity = 110/185 (59.46%), Postives = 141/185 (76.22%), Query Frame = 2 
Query:  230 DAVMASAQERMDKSVESVRLNLETLRTGRANPKILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQEADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDTVKKAEKAKNLG--KDQSKDAQDAIQKLTDKTTKTIDEKVAAKEKDILKV 778
            D V + A+ +M KSVESV+ NL TLRTGRANP +LDRV V+ YG  TPLNQVAS+  +S T+L+V+ YD + L D+  AI E+D+G+ P+NDG  IRLN+P +TE+RRKEL K AK LGE+GKVA+RN+RR+AVD++KK  K K+ G  +D  KD+ D+IQKLTDK  K +DE VA KEKDI KV
Sbjct:   56 DEVESEAEVKMKKSVESVQTNLNTLRTGRANPSLLDRVQVDYYGTPTPLNQVASISVSSGTSLIVDPYDKSSLGDVEKAIMESDIGIVPSNDGEKIRLNIPSLTEERRKELMKTAKSLGEDGKVALRNVRRDAVDSIKKLAKDKDAGVSEDSVKDSTDSIQKLTDKYVKEVDEVVAGKEKDISKV 240
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BLAST of Ec-00_005780.1 vs. uniprot
Match: A0A7S2JZ54_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZ54_9STRA)

HSP 1 Score: 203 bits (517), Expect = 9.780e-59
Identity = 105/183 (57.38%), Postives = 139/183 (75.96%), Query Frame = 2 
Query:  230 DAVMASAQERMDKSVESVRLNLETLRTGRANPKILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQEADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDTVKKAEKAKNLGKDQSKDAQDAIQKLTDKTTKTIDEKVAAKEKDILKV 778
            D +    +ERM KS +SV  NL+T+ TGRANP +LDR+  + YGA TP+NQ+AS+   SA+ L ++ YD + L+DI  AI  +DLG+TP NDG+VIR+N+P +TE+RRKEL K+ KG+GEEGKVA+RN+RR+ VD +KK EKA  +G+DQSK+ QD IQK+TDK  K IDE VA KEKD+ KV
Sbjct:   47 DEIALEIEERMQKSCDSVVRNLQTISTGRANPAMLDRIQADYYGAPTPINQMASISVPSASQLQIDPYDKSSLSDIEKAIIISDLGMTPQNDGSVIRINIPALTEERRKELLKKCKGIGEEGKVAVRNVRRDGVDKIKKLEKASTIGEDQSKEGQDDIQKMTDKYVKDIDEIVAKKEKDVSKV 229
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BLAST of Ec-00_005780.1 vs. uniprot
Match: A0A6U3R470_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3R470_9STRA)

HSP 1 Score: 202 bits (514), Expect = 2.800e-58
Identity = 111/193 (57.51%), Postives = 143/193 (74.09%), Query Frame = 2 
Query:  200 LKMAADEFDGDAVMASAQERMDKSVESVRLNLETLRTGRANPKILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQEADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDTVKKAEKAKNLGKDQSKDAQDAIQKLTDKTTKTIDEKVAAKEKDILKV 778
            LKMA +E D   V    +ERM KS+ES++ NL T+RTGRAN  ILDRV  + YGAETP+NQ+A +  T++  L ++ YD + L+ I  AI E+DLG++P NDG+VIR+N+PP+TEDRRKEL K  K  GEEGKVA+RN+RR+ VDT+KK EK   +GKD+S D  D +QKLTDK  K ID+ VAAKEKDI+ V
Sbjct:   41 LKMA-EEID--MVTMDGEERMAKSIESLKRNLSTIRTGRANAAILDRVKADYYGAETPINQMAGISVTNSQQLTIDPYDKSSLSAIEKAIIESDLGISPQNDGSVIRINIPPLTEDRRKELLKVCKSTGEEGKVAVRNVRRDCVDTIKKMEKNSEVGKDESLDGLDEMQKLTDKHVKEIDDIVAAKEKDIMTV 230
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BLAST of Ec-00_005780.1 vs. uniprot
Match: A0A7S2YL39_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YL39_9STRA)

HSP 1 Score: 202 bits (514), Expect = 3.070e-58
Identity = 109/195 (55.90%), Postives = 144/195 (73.85%), Query Frame = 2 
Query:  194 SSLKMAADEFDGDAVMASAQERMDKSVESVRLNLETLRTGRANPKILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQEADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDTVKKAEKAKNLGKDQSKDAQDAIQKLTDKTTKTIDEKVAAKEKDILKV 778
            S L M+ DE   D V   A+ERM KS++SV+ NL T+RTGRA+  +LDRV V+ YGAETPLNQ+A++   SA  L V+ YD +I  DI  AI E+DLGL  NNDGT++R+N+P +TEDRRKE+ K+ K LGE+GKVA+RN+RR  V+T+KK EK  ++G+D+SK  QD IQKLTD   K ID+ VA KEK+++ V
Sbjct:   39 SRLFMSTDEKTVDDVTLDAEERMSKSIDSVKQNLMTIRTGRASANMLDRVKVDYYGAETPLNQLATIGVPSAQQLTVDPYDKSITNDIEKAIAESDLGLMANNDGTMLRINIPALTEDRRKEMLKQCKALGEDGKVAVRNVRRACVETIKKMEKGGSIGEDESKGGQDDIQKLTDTNVKLIDDIVAKKEKEVMTV 233
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BLAST of Ec-00_005780.1 vs. uniprot
Match: A0A7S2CMX2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CMX2_9STRA)

HSP 1 Score: 202 bits (513), Expect = 4.310e-58
Identity = 103/186 (55.38%), Postives = 139/186 (74.73%), Query Frame = 2 
Query:  221 FDGDAVMASAQERMDKSVESVRLNLETLRTGRANPKILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQEADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDTVKKAEKAKNLGKDQSKDAQDAIQKLTDKTTKTIDEKVAAKEKDILKV 778
             D D + + A+ +M KS++SV+ NL+TLR GRA+  +LDRVVV+ YGAETPLNQ+A +  T   AL ++ YD + L DI  A+ E+DLG+TPNN+G  IRLN+P +TEDRRKEL+K AK LGE+GK A+RN+RR+AVD VKK  KA ++ +DQ KD +DA+QK+TDK  K I+  +  KE DI+KV
Sbjct:   48 MDVDKITSDAETKMKKSLDSVQSNLDTLRAGRASANLLDRVVVDYYGAETPLNQLAGISVTGGQALTIDPYDKSTLGDIERALMESDLGMTPNNNGETIRLNIPALTEDRRKELSKTAKSLGEDGKTALRNVRRDAVDKVKKLAKAGDISEDQGKDGEDAVQKMTDKYVKEIETVIKKKEADIMKV 233
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BLAST of Ec-00_005780.1 vs. uniprot
Match: A0A7S1TJD3_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TJD3_9RHOD)

HSP 1 Score: 200 bits (509), Expect = 9.520e-58
Identity = 106/199 (53.27%), Postives = 145/199 (72.86%), Query Frame = 2 
Query:  182 QRWTSSLKMAADEFDGDAVMASAQERMDKSVESVRLNLETLRTGRANPKILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQEADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDTVKKAEKAKNLGKDQSKDAQDAIQKLTDKTTKTIDEKVAAKEKDILKV 778
            +RW  S+K          +   ++ERM KS+E+V  +  T+RTGRANP ILDRV+V  YGAETPL Q+ASV T S+T + ++++D + + DI  AI E+DLGLTP+NDG VIRLN+P +T+DRRKE+ K+ K L EEG+VA+RNIRR+ VD +K  EK+ ++GKD+SK AQD IQKLTDK  KT+D  +  KE +++KV
Sbjct:   26 KRWRMSVK---------DIAKGSEERMKKSIEAVGTSFNTIRTGRANPAILDRVMVSYYGAETPLKQLASVSTPSSTVIAIDAFDKSCIKDIERAIMESDLGLTPSNDGNVIRLNIPALTQDRRKEMVKQLKQLAEEGRVALRNIRRDGVDQIKALEKSSDIGKDESKIAQDEIQKLTDKYVKTVDSLLKDKEGEVMKV 215
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BLAST of Ec-00_005780.1 vs. uniprot
Match: A0A7S4EEJ6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEJ6_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.020e-57
Identity = 103/177 (58.19%), Postives = 137/177 (77.40%), Query Frame = 2 
Query:  248 AQERMDKSVESVRLNLETLRTGRANPKILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQEADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDTVKKAEKAKNLGKDQSKDAQDAIQKLTDKTTKTIDEKVAAKEKDILKV 778
            A +RM+KS+ESV  N+ T+RTGRA+P ILDRV  + YG ETP+NQ+AS+   SA  L VE +D ++L D+  AI E+D+GLTP NDGTVIRLN+P +TEDRRKE+ K+ K +GEEGKVA+RNIRR+AVD++KK EK  ++ +D+SK +QD IQK+TD+  K ID  V  KE D++KV
Sbjct:   52 AMDRMEKSIESVMQNMNTIRTGRASPAILDRVKCDYYGTETPINQMASISVPSAQQLTVEPFDKSMLGDVERAIMESDVGLTPMNDGTVIRLNIPSLTEDRRKEMMKQCKAIGEEGKVAVRNIRRKAVDSIKKLEKDSDISEDESKSSQDDIQKMTDEKVKEIDGIVEKKENDVMKV 228
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BLAST of Ec-00_005780.1 vs. uniprot
Match: A0A836CN93_9STRA (Ribosome recycling factor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN93_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.360e-57
Identity = 108/173 (62.43%), Postives = 132/173 (76.30%), Query Frame = 2 
Query:  260 MDKSVESVRLNLETLRTGRANPKILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQEADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRREAVDTVKKAEKAKNLGKDQSKDAQDAIQKLTDKTTKTIDEKVAAKEKDILKV 778
            M KSV+  R NL TLRTGRA+P ILDRV V+ YG  TPL  +A+VKT+SAT L+VE YD + L+ I   I E+ +GL PNNDG VIRLN+P VTEDRRKEL KEA+ LGEEGKVA+RNIRR+ V+ +KKAEK+K + +DQSK+    IQK+TDK  K +DE VA KEKDI+ V
Sbjct:    1 MQKSVDKCRENLATLRTGRASPGILDRVFVDYYGTPTPLKGLAAVKTSSATQLMVEPYDRSSLSAIERGILESGVGLNPNNDGQVIRLNIPAVTEDRRKELCKEARALGEEGKVAVRNIRRDVVEVIKKAEKSKEISQDQSKNTSGDIQKITDKYAKMVDEAVATKEKDIMTV 173
The following BLAST results are available for this feature:
BLAST of Ec-00_005780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI65_9PHAE2.620e-15196.81RRF domain-containing protein n=2 Tax=Ectocarpus T... [more]
B7GAC1_PHATC4.050e-6059.12Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A7S2S100_9STRA6.990e-5959.46Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2JZ54_9STRA9.780e-5957.38Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6U3R470_9STRA2.800e-5857.51Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2YL39_9STRA3.070e-5855.90Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2CMX2_9STRA4.310e-5855.38Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1TJD3_9RHOD9.520e-5853.27Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A7S4EEJ6_9STRA1.020e-5758.19Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A836CN93_9STRA1.360e-5762.43Ribosome recycling factor domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:9271385..9278241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score458.8
Seed ortholog evalue1.7e-126
Seed eggNOG ortholog2880.D7G2D8
Preferred nameRRF1
Length1574
KEGG rclassRC00002,RC00078,RC02809,RC02889
KEGG koko:K02838,ko:K03283,ko:K13811
KEGG TC1.A.33.1
KEGG ReactionR00509,R00529,R04928,R04929
KEGG Pathwayko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map00230,map00261,map00450,map00920,map01100,map01120,map01130,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00176,M00353,M00355
Hectar predicted targeting categorysignal peptide
Gene idEc-00_005780.1
GOsGO:0000003,GO:0002181,GO:0002184,GO:0002376,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007275,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009657,GO:0009658,GO:0009790,GO:0009791,GO:0009793,GO:0009814,GO:0009817,GO:0009987,GO:0010154,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0022414,GO:0032501,GO:0032502,GO:0032543,GO:0032544,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0042742,GO:0043021,GO:0043023,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045087,GO:0046872,GO:0046914,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0061458,GO:0070126,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098542,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008
EggNOG free text desc.ribosomal large subunit binding
EggNOG OGsCOG0233@1,KOG4759@2759
EC2.7.1.25,2.7.7.4
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009,ko03012,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005780Ec-00_005780Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 9271385..9278241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005780.1Ec-00_005780.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 9272177..9278215 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005780.1.8Ec-00_005780.1.8Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9271385..9272278 -
Ec-00_005780.1.7Ec-00_005780.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9272530..9272610 -
Ec-00_005780.1.6Ec-00_005780.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9273016..9273103 -
Ec-00_005780.1.5Ec-00_005780.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9273605..9273709 -
Ec-00_005780.1.4Ec-00_005780.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9274177..9274260 -
Ec-00_005780.1.3Ec-00_005780.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9275339..9275451 -
Ec-00_005780.1.2Ec-00_005780.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9276094..9276177 -
Ec-00_005780.1.1Ec-00_005780.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 9278117..9278241 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0057803UTR:Ec-00_005780.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 9271385..9272176 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005780.1CDS:Ec-00_005780.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 9272177..9272278 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0057805UTR:Ec-00_005780.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 9278216..9278241 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005780.1 ID=Ec-00_005780.1|Name=Ec-00_005780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=252bp
MRASVFTAAASAAAVALCSGVSGFVFAPPLAAKRAGVPTTGKASPCASTA
PRQRWTSSLKMAADEFDGDAVMASAQERMDKSVESVRLNLETLRTGRANP
KILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQE
ADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRRE
AVDTVKKAEKAKNLGKDQSKDAQDAIQKLTDKTTKTIDEKVAAKEKDILK
V*
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spliced messenger RNA

>Ec-00_005780.1 ID=Ec-00_005780.1|Name=Ec-00_005780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1574bp|location=Sequence derived from alignment at chr_00:9271385..9278241- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GAGAGAGAGAGAGAGAGAGAGAGATCATGAGGGCTTCTGTATTCACGGCT
GCGGCTTCCGCGGCGGCGGTAGCCTTGTGTTCCGGAGTGTCGGGGTTTGT
CTTCGCACCGCCTCTGGCTGCAAAGCGAGCTGGAGTACCGACGACGGGCA
AAGCATCGCCGTGCGCATCCACGGCTCCTCGCCAGAGATGGACGTCGTCC
TTGAAAATGGCTGCGGACGAATTCGACGGGGATGCGGTCATGGCTTCGGC
TCAGGAACGGATGGACAAATCGGTGGAGAGCGTGCGGCTTAACCTCGAGA
CCCTCCGAACCGGGCGGGCAAACCCCAAGATCCTGGACCGCGTGGTCGTG
GAGTGTTACGGGGCGGAGACGCCGCTTAACCAGGTGGCCTCCGTGAAGAC
CACCAGCGCCACCGCGCTCTTGGTGGAGTCGTACGATCCGACTATCCTGG
CCGACATCGCCGCCGCCATCCAAGAGGCGGACTTGGGCCTAACTCCGAAC
AACGACGGCACCGTGATCCGGTTGAACATGCCGCCCGTGACGGAGGACCG
CAGAAAGGAACTCGCTAAGGAGGCCAAGGGCCTTGGAGAAGAGGGGAAGG
TTGCGATTCGCAACATCAGGCGGGAGGCTGTGGACACGGTGAAGAAGGCC
GAAAAGGCCAAGAACTTGGGCAAGGACCAGTCTAAGGATGCACAAGACGC
GATCCAAAAGCTCACCGATAAGACTACGAAGACCATAGACGAGAAGGTTG
CCGCCAAGGAGAAGGACATCCTCAAAGTGTAAACGTACCAGGTCTACGTT
ATGTACGAGTTCTACGTAAGCAAGTGTAGAGACCGTCTGTCCCTAGATAG
TCTACTTAGAGAAGTTTAAGTACTTCATATTAGAGCGTACCGCCGCCCCA
TGGGCGATTTGTTGTGGTCGTCTTCATCATCTACAATTTGCCGCAGCTGG
GCTCGAACCCACCCATTTCGGGCGGATGCCCACGGCAAAACATACAAGTG
GCTGAGGTGGTCGGTGCGGTGTGGGCGAAAATGTCTCGGTACGTTTGGGA
ATGGCAAGAAAATTTACCTTCTAAAACAGTGTCCCCGTGGGCGGACGACC
ACTCTTGAGTTCTACGAGGAGGATGCAAGAAGGAACATCCAACCAAGCGA
GGGACGGTTTCCCTCCCTACTGCTGCTGTAAGGATGCGGCGCAATATCGA
AAGTGAAGGCTTTTGCCCTGCGACGGGTACATTCATTTGCGTAGTATTCG
CGGGAGGTTGACAGAAGTTGCGCGATGAAGATGCACCAAGCGGTTCGAGT
AAGTGTAGAGAGAGGAAAACACACTCACCTTGCTGTTCACAACGGTATTA
ATTGATTAATTGGTATTTGTTCTTCTTCTAACGGGTATTATTGCAATTAA
TTCATTACTTCCAGCAACGAATCTCTCGTGTGCCAAGCAGTGTAAATGGT
AGACCCGGAGCTAGCTGTAGATCTGTACTATATAATACTTGTAGGTTCGA
TTCGAAACCCCGTTTTGCTGACAAATGACTCACCATTCAAGCTTGTGGGC
CGGAATTTGTTCGTTGTTCATATT
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protein sequence of Ec-00_005780.1

>Ec-00_005780.1 ID=Ec-00_005780.1|Name=Ec-00_005780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=252bp
MRASVFTAAASAAAVALCSGVSGFVFAPPLAAKRAGVPTTGKASPCASTA
PRQRWTSSLKMAADEFDGDAVMASAQERMDKSVESVRLNLETLRTGRANP
KILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQE
ADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKGLGEEGKVAIRNIRRE
AVDTVKKAEKAKNLGKDQSKDAQDAIQKLTDKTTKTIDEKVAAKEKDILK
V*
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mRNA from alignment at chr_00:9271385..9278241-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005780.1 ID=Ec-00_005780.1|Name=Ec-00_005780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6857bp|location=Sequence derived from alignment at chr_00:9271385..9278241- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GAGAGAGAGAGAGAGAGAGAGAGATCATGAGGGCTTCTGTATTCACGGCT
GCGGCTTCCGCGGCGGCGGTAGCCTTGTGTTCCGGAGTGTCGGGGTTTGT
CTTCGCACCGCCTCTGGCTGCAAAGGTGAGCAATGGAATTGAACATGACA
GCAGTTGTAATCCGCATGCTGCTGTCCACGAAGGGTGCCCCCACCAGCAG
GAAGCCCTCCTGCTGTTCCCTCCTTGCAGCTGTGCGCGGTTGGGTTTGGT
GTGGGTATCAAGGTAGTGTGGAGCTAGGGCGTCTTTGCATTGTTGATGGT
GTGCGTCTTTTCGATCATGATGATGCCATCGGAGTGTGGGCACTTGGAGA
GCACACACATGCGTGCAGCGGTTTGGATGTGTCGATCGTCGATCGTCGTT
CACGACTCGCCGCCGCTGATGTGTCACACCGCCGTTGCGGGTCCGCTGGG
ACGTTGCGCATCCAAGACACACGTAGAAGTAGCAGTAGGTGTAGACTGGT
GGTGTTGGGACCTTGTTCTGTTGTTGCGAATCTGTGCTGGCTGGCAACCA
CCATGAAGGACTGCAAGCACACGCGCGGGCGGAGCTCAGCACCCCGTGTT
GAACTAACTGCCCGCAACTGAAGAAGGCCGGCGGCGGCTATTGTAAGGGG
CCAAGAAGAGTTAAGGGGGTGCAGAAGACGAACTTTGATGTTGACTAATT
TTGAAATCAAACGCAAGAGCACCAGAAATTTCACTACAGACACACCAGAC
CAGTAGGAAGGCACCGCGAAAAACAGCAATCGTTGATTCTCGCATAGGGC
GGCAGTAGAGGCTGCTCAAAACATGCATTTCACGCGTCTACCTCCACACG
CCTCCTTTGAAATCAAGATAAAAATTCGCCACTATTCTAAATTCTAGTCA
AAAACGTCGAAACGGAAGGCGCTCAAACAAGTCAATTTTGAGGGTTAGGT
GTCGCATTCTTTTGTCATCAGTAGAGGACATCATGAAGAGGCGTCGTGTG
CGTGTGCACGTGCAGGTTTGCTACTGGAGCTGAAATATCGAAGGTCGCAG
CAGCCTCTGAAAACAGTCCGAAGTCTGCGCCGGAACCAAGCGGCATCCAA
CATTTGTCATAGCCGTGCTCGCCGCCACTGACCCCANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAT
GCCACTAGGCTACTGGCTGACGACCCGTGGTTCAGGAGATTGGGGTCAGT
GGCGGCGAGCACGGCTATGACAAATGTTGGATGCCGCTTGGTTCCGGCGC
AGATTTCGGACTGTTTTCAGAGGCTGCTGCGACCTTCGATATTTCAGCTC
CAGTAGCAAAGTTGAACGTGCCAGCACGCACGACGCCTCTTCATGGTGTC
CTCTACTGATGACAAAATAATCCGACACCTAACCCTCGCGGGAAGGTTGT
TTTCTTTCTTTGTATAGGATTGAAGTATGGGGAAAAGAGCCAGCGTCACT
ACCCCTTTTCTGCACCCCCTTAACCGCACGCTCGCACGTAGGTGCATCAC
CTCATGCACCCGCTTCCACGAACCTTGAATGCTGATTGAAACAAAACAGG
ACCAAACTTTGACATTTCCATTCGCTCTTCCGGCCGTCTGCCTGCATGCT
CAAACGCCAAACAGCGAGCTGGAGTACCGACGACGGGCAAAGCATCGCCG
TGCGCATCCACGGCTCCTCGCCAGAGATGGACGTCGTCCTTGAAAATGGT
GAGCAAGGCAACCTGACCCTTGCTCCGACCGCCCGGTTTGTTTCGACGAT
AGTATGCGCAAACGATAGGGAGGTACAACACTCCTGAAGTAAACCTTGCG
CTGTACTGCTGTGCGTGTTTGACTCAGCACCATTGGTCAAGGAGCGGCAT
CATGCTGTGCCTGCTACGCCCGGTAGGTTGCTCGGACCTTTCGTGATCAC
AAACCTTCGCATCATTTCCGCCTGAAGAAACGCCCGCGGCGCGGAGTTTG
ACGCTGGCGGTACCCTATCCGCCCCAAGAGAAAGCGGAAGTTTCCATGGG
AAACCTCGAATGTTCCGGTTATATTTGGGAGGCGTTCATTGGCGGACCCG
ATCGATCGCCTACTCCCACTGCTGCTACAGTACATAAATGTCGAATATCG
AGAAGGGGGTGTGCCGTTCATAAGTGCTGTGGCATTCACAGATGTCACAG
AGGCCGCGACGACCGAACCTTCGCACAATGATACTGCTGTCGGTGTTCTT
TCCCCTCTCGTTCTAACGGGTCATAGCCTAGAAACAACAGGATCATGGAC
CATCCAATAAAAGTGGGAGCGATGACTTGGTTTGTTCCTTGGTTTCTTTC
CCTCCGCGCGTGCGGTTAACTGCCGTCCGCTTGTCGCCAGGCTGCGGACG
AATTCGACGGGGATGCGGTCATGGCTTCGGCTCAGGAACGGATGGACAAA
TCGGTGGAGAGCGTGCGGCTTAACCTCGAGACCCTCCGAACCGGGCGGGC
AAAGTGAGTGATGCGCCGCGGCAATCAATACCTCAGCCAACACAGCAGCT
GCGGTTCAGGAGCGAGCGACCCATAGAGACATCTTCGTGTTGTCCAAGGT
GGAAGAAACGGGACGATTGATCGCGTTGCGGGATGATTTTGTGCAATGAA
CGTTTTGGACGAGAAAAGTATTCCCTTCGTGATGGTGGCGATGAAAACGA
TTAACATGTGGAGCCTAACAGCATAACCATTCGCCTGGCCGGTTGCCAAG
CCTGTAGCAAGAGTGAGACGAATTGTCATCCGTCGGAGCCGCACTTCTCC
CGATGTCATTGTAGTCGTATCCATCAATTTTTATATTGTAGTCCTATCCA
TCCATCAATTTTATGTGACAAGGTCCAAGGATCCGCGGGGCGCTTAACGC
TATTTTGTGTCTATATACAGGTATCAGGAGCAGATACCATCATAGAGGGA
CCGCTCATTGATGCGGGACTCAGAGCTTGCGTGGAACAATTTGGCAGCTA
TAAGCACTAACGTCGACATCATCGACCCTCCCCACCACTAGAAGAATTGC
TCGCTGCAAGGCCATCTGCCATTGCCCCGTGATGCGAACAACGGGCCCCA
TCTCTTGCACAGACGACAAACCGCGTATTGTGCGGAAAACATCGCCTCCT
CCTCTTCTTCGACCTCAACCTGTGCATTCTGAGCCCTGGCAAACTTCGAA
CCTCCGACGTTGTTTGTTTTCGTGCGTGTCCCCTTCTTGTTGCTGATTGG
TCGATCCAACTCGCTGCTGGCGGGCTTATCTTAATCGTAGTAGTGCATGC
TCTCATTTTCTGCGGTGGTTCTACCCGTGTGGCTCTTGGCCGGGTTTACT
GTTCGCCCTCCTTCGCCCGCCCGTGGGTTGATTCGGCACCCTTGGTTTCA
CTTCCTCTCTTGGCACCACCTGCTTTCGACAGTAGTCTTGGAATGCTTGG
TTTGAATTGCTTTCGAAAATGGGCCTTGGTCTTTGCGCCGTTGTTTTCAA
TTGCTATCTCATGACGCCCTTGGCATTGCTTGATTTCTTGGCGCCCTTGG
TTTCACCTTGCTCTCTTGGTGCCTGCCTCAGCCCCAAGATCCTGGACCGC
GTGGTCGTGGAGTGTTACGGGGCGGAGACGCCGCTTAACCAGGTGGCCTC
CGTGAAGACCACCAGGTAAATTATTTTTCTAATTTGGTAAATTGCTTGTT
TTGTGAGAATTACTTGCTGCCTTGTGGGTAACGTTGTCTAGGAAGTATCT
AGCAGCCTCGTAACAGAAAAAAGAAGCCAGGCGTGCGCTGACCCAGCATC
CACAATGATCGACGCAAGACGTCACGGCGGGACAAAGTCAGAAGGAGAGA
GAGTGCTCTACCGCCGGTTCTCCTCGTTCGCCTGGAACGTGCTAATTGAG
GTCTCGCTATTCCTTGGTTTGGGGTCACCATGTACATTTTGTTGTCCGCT
ACTCGTCGGCCATATCGAGAAGCGGTTATAGGCTCTGAGGGACCGCACTG
ACTAAGAGACACGTATCCTCCAGTGGCTGTTTTTTTACAGTTTATCACCA
TCCCCTCTCCTTCTCCGTCCCCCTTTCTCTATCCCGCCTGGGTGCCGTTT
TTGGTTGGTTGTTTGTTGTGTGCTTCCCTTAGCGCCACCGCGCTCTTGGT
GGAGTCGTACGATCCGACTATCCTGGCCGACATCGCCGCCGCCATCCAAG
AGGCGGACTTGGGCCTAACTCCGAACAACGACGGCACGTAAGGGGAAAGA
CGCATGGTGGCAAGTATGTTTTTTTTTTTGTTCGCTTGGACGCCGACTGT
GTGCCCTACAAGACTGCAGCCGGTGCGTTGTGTTGGTTCTTGGTTGCTGA
AATGTTGTGATGATTTTTTTATTCGCTCCGGACGACGAGCGCACGCCAAC
ACGACTCTTCAATGACCCCTTTGCGTTGCTTTTGGTTCTCTTCGCCCCGT
CGACCAGGGTCTAGTGGTCTCTTAGCAATGTTCGGGGGACTCCTTTTCTC
TGCACGTCATAGTCCTCGCGGCCTCAACTTCGCCCCCCCGAAAGGAAGAG
GCTGTGCCCCTCCATTTCGCTGATTGAATTTCCCATCGATTTTTATTTTT
TCGAGGTCTTTCTCCCGCCCCCCACACCGTCCCGGTATTGTAGGGATGCA
AGGTCTTTGAACTACCGACTACGGCATAGGTTTATATGACTACACCCCAC
CCCTTGGCCGTGTGTGCCCCCCCGTGGTGCCGAAACAGCGTGATCCGGTT
GAACATGCCGCCCGTGACGGAGGACCGCAGAAAGGAACTCGCTAAGGAGG
CCAAGGGCCTTGGAGAAGAGGGGAAGGTAGGACTTCAGCAGTTACTGGTA
CTCTTGAGCCTCTGTCCCGCTTCATGCCATGCAAGAGTCTTAGGGGAGGG
GGAAGGTAGGTCAGCATGTAAGTTCCCCGCAATGATCTATGCTGGTGCTC
TTGAATCTCTGACCCTCTTCTTCATGGCCATGGGCTTGAATTTCGAGGGT
TTTGTTGCCCGCATCACGTAGCACGTGTTCGCTTTATCTGAGTGGACGAG
GCTCATGCGTACGCTATTTTGACTATAATTGCACCCCCAGGGATTGCGAT
TGCTATTGGAGCTTCCAACGTGGGAGGGTGAATGCTGCAGGTAGTCAGAC
CGAGTTGGAAAACGAGTTTGATTCCGCGTGGTTTCTGAGGTGTTCACGAG
CGCGCTTCTTCGTTTGTTTTTTCGTTCACAGGTTGCGATTCGCAACATCA
GGCGGGAGGCTGTGGACACGGTGAAGAAGGCCGAAAAGGCCAAGAACTTG
GGCAAGGACCAGGTAACTTAACTACTGGTACCATTCTAGTGGGAATTTGG
GTTTGACCTACGGCAGTAGGTTTAGGGTTTCTAGTGGTGTTTCGTGAATG
GAGGGTCGTTTTTTATGTTGCGTTTTTCTTCGTCGTCCGGCGGCCTGGAT
GCATCCCCAAGACTAAGGCAAGCGTATACGTTAAAAAACACCCCCCTTTC
CTCGCTCGCCTTCGATCCCTTGGTTGTTCTTCTGGCTTCCGGCGGGATGA
AAAACGAGCGCAGTCTAAGGATGCACAAGACGCGATCCAAAAGCTCACCG
ATAAGACTACGAAGACCATAGACGAGAAGGTTGCCGCCAAGGAGAAGGAC
ATCCTCAAAGTGTAAACGTACCAGGTCTACGTTATGTACGAGTTCTACGT
AAGCAAGTGTAGAGACCGTCTGTCCCTAGATAGTCTACTTAGAGAAGTTT
AAGTACTTCATATTAGAGCGTACCGCCGCCCCATGGGCGATTTGTTGTGG
TCGTCTTCATCATCTACAATTTGCCGCAGCTGGGCTCGAACCCACCCATT
TCGGGCGGATGCCCACGGCAAAACATACAAGTGGCTGAGGTGGTCGGTGC
GGTGTGGGCGAAAATGTCTCGGTACGTTTGGGAATGGCAAGAAAATTTAC
CTTCTAAAACAGTGTCCCCGTGGGCGGACGACCACTCTTGAGTTCTACGA
GGAGGATGCAAGAAGGAACATCCAACCAAGCGAGGGACGGTTTCCCTCCC
TACTGCTGCTGTAAGGATGCGGCGCAATATCGAAAGTGAAGGCTTTTGCC
CTGCGACGGGTACATTCATTTGCGTAGTATTCGCGGGAGGTTGACAGAAG
TTGCGCGATGAAGATGCACCAAGCGGTTCGAGTAAGTGTAGAGAGAGGAA
AACACACTCACCTTGCTGTTCACAACGGTATTAATTGATTAATTGGTATT
TGTTCTTCTTCTAACGGGTATTATTGCAATTAATTCATTACTTCCAGCAA
CGAATCTCTCGTGTGCCAAGCAGTGTAAATGGTAGACCCGGAGCTAGCTG
TAGATCTGTACTATATAATACTTGTAGGTTCGATTCGAAACCCCGTTTTG
CTGACAAATGACTCACCATTCAAGCTTGTGGGCCGGAATTTGTTCGTTGT
TCATATT
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Coding sequence (CDS) from alignment at chr_00:9271385..9278241-

>Ec-00_005780.1 ID=Ec-00_005780.1|Name=Ec-00_005780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=756bp|location=Sequence derived from alignment at chr_00:9271385..9278241- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGGGCTTCTGTATTCACGGCTGCGGCTTCCGCGGCGGCGGTAGCCTT
GTGTTCCGGAGTGTCGGGGTTTGTCTTCGCACCGCCTCTGGCTGCAAAGC
GAGCTGGAGTACCGACGACGGGCAAAGCATCGCCGTGCGCATCCACGGCT
CCTCGCCAGAGATGGACGTCGTCCTTGAAAATGGCTGCGGACGAATTCGA
CGGGGATGCGGTCATGGCTTCGGCTCAGGAACGGATGGACAAATCGGTGG
AGAGCGTGCGGCTTAACCTCGAGACCCTCCGAACCGGGCGGGCAAACCCC
AAGATCCTGGACCGCGTGGTCGTGGAGTGTTACGGGGCGGAGACGCCGCT
TAACCAGGTGGCCTCCGTGAAGACCACCAGCGCCACCGCGCTCTTGGTGG
AGTCGTACGATCCGACTATCCTGGCCGACATCGCCGCCGCCATCCAAGAG
GCGGACTTGGGCCTAACTCCGAACAACGACGGCACCGTGATCCGGTTGAA
CATGCCGCCCGTGACGGAGGACCGCAGAAAGGAACTCGCTAAGGAGGCCA
AGGGCCTTGGAGAAGAGGGGAAGGTTGCGATTCGCAACATCAGGCGGGAG
GCTGTGGACACGGTGAAGAAGGCCGAAAAGGCCAAGAACTTGGGCAAGGA
CCAGTCTAAGGATGCACAAGACGCGATCCAAAAGCTCACCGATAAGACTA
CGAAGACCATAGACGAGAAGGTTGCCGCCAAGGAGAAGGACATCCTCAAA
GTGTAA
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Synonyms
The feature 'Ec-00_005780.1' has the following synonyms
Synonym
Esi0471_0003
Esi_0471_0003