Ec-00_005760.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_005760.1
Unique Name	Ec-00_005760.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	775

Homology

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BLAST of Ec-00_005760.1 vs. uniprot
Match: D7G2D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2D6_ECTSI)

HSP 1 Score: 1060 bits (2741), Expect = 0.000e+0
Identity = 595/596 (99.83%), Postives = 596/596 (100.00%), Query Frame = 1

Query:  616 EVVDVLPMGTIVTLSTDWGEVMEKHPQRGKNGKGKVLWMVEPQEGFLERRPLEDLPANRGDEADEAEVAAPPPHAAPVSLTPEERMGIVRGATKMSELLRSTLRRGAYFEGAAGVHSFLEVHRAALRAAATLMRKDPASREGLLECRGIELFVLIVSKFCEEDRLLCEYGCWALAVFAGEGXXXXXXXPSVFRFQEAVVEAGGLAAVGCAVDAHPDSAQLRRCGVSALAAIVHDNASTAGQLHSLNLQATVAEDSIRRWPNDPELSCLACWVLRSVVEPPSRLPRQGDPELRGKGDVVLHGGIGGDGGSVVGSKFRLRRKSVEEVEVGSAMPENSGESSLQKRNGGGLEGDNSLALGSGDDPRDQSGDANETGGCGGGVFMEGSTMSGSVFGMGDNETSDLLISLADDDDIDXXXXXXXXXXXXXXXXXXSVSPAXXXXXXXXPVSAVTASSTSNKHRGLEGVPVNEGRWDAPMEQLGRAGQSTISSESLRAGEPIGSGTREAGEGRVAGQAGVVMAAAFEGEEDGEVLERLLKLAEATKVLNHDNEDTRKAASRLVEAILRQIDSTYVRSSRRRRRASQARVARVLREGQAIGAL 2403
            +VVDVLPMGTIVTLSTDWGEVMEKHPQRGKNGKGKVLWMVEPQEGFLERRPLEDLPANRGDEADEAEVAAPPPHAAPVSLTPEERMGIVRGATKMSELLRSTLRRGAYFEGAAGVHSFLEVHRAALRAAATLMRKDPASREGLLECRGIELFVLIVSKFCEEDRLLCEYGCWALAVFAGEGXXXXXXXPSVFRFQEAVVEAGGLAAVGCAVDAHPDSAQLRRCGVSALAAIVHDNASTAGQLHSLNLQATVAEDSIRRWPNDPELSCLACWVLRSVVEPPSRLPRQGDPELRGKGDVVLHGGIGGDGGSVVGSKFRLRRKSVEEVEVGSAMPENSGESSLQKRNGGGLEGDNSLALGSGDDPRDQSGDANETGGCGGGVFMEGSTMSGSVFGMGDNETSDLLISLADDDDIDXXXXXXXXXXXXXXXXXXSVSPAXXXXXXXXPVSAVTASSTSNKHRGLEGVPVNEGRWDAPMEQLGRAGQSTISSESLRAGEPIGSGTREAGEGRVAGQAGVVMAAAFEGEEDGEVLERLLKLAEATKVLNHDNEDTRKAASRLVEAILRQIDSTYVRSSRRRRRASQARVARVLREGQAIGAL
Sbjct:    3 QVVDVLPMGTIVTLSTDWGEVMEKHPQRGKNGKGKVLWMVEPQEGFLERRPLEDLPANRGDEADEAEVAAPPPHAAPVSLTPEERMGIVRGATKMSELLRSTLRRGAYFEGAAGVHSFLEVHRAALRAAATLMRKDPASREGLLECRGIELFVLIVSKFCEEDRLLCEYGCWALAVFAGEGXXXXXXXPSVFRFQEAVVEAGGLAAVGCAVDAHPDSAQLRRCGVSALAAIVHDNASTAGQLHSLNLQATVAEDSIRRWPNDPELSCLACWVLRSVVEPPSRLPRQGDPELRGKGDVVLHGGIGGDGGSVVGSKFRLRRKSVEEVEVGSAMPENSGESSLQKRNGGGLEGDNSLALGSGDDPRDQSGDANETGGCGGGVFMEGSTMSGSVFGMGDNETSDLLISLADDDDIDXXXXXXXXXXXXXXXXXXSVSPAXXXXXXXXPVSAVTASSTSNKHRGLEGVPVNEGRWDAPMEQLGRAGQSTISSESLRAGEPIGSGTREAGEGRVAGQAGVVMAAAFEGEEDGEVLERLLKLAEATKVLNHDNEDTRKAASRLVEAILRQIDSTYVRSSRRRRRASQARVARVLREGQAIGAL 598

[Close]

BLAST of Ec-00_005760.1 vs. uniprot
Match: A0A6H5L5W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5W5_9PHAE)

HSP 1 Score: 941 bits (2432), Expect = 0.000e+0
Identity = 523/638 (81.97%), Postives = 543/638 (85.11%), Query Frame = 1

Query:  556 MKVKQGFKCRVYKTPACRPDEVVDVLPMGTIVTLSTDWGEVMEKHPQRGKNGKGKVLWMVEPQEGFLERRPLEDLPANRGDEADEAEVAAPPPHAAPVSLTPEERMGIVRGATKMSELLRSTLRRGAYFEGAAGVHSFLEVHRAALRAAATLMRKDPASREGLLECRGIELFVLIVSKFCEEDRLLCEYGCWALAVFAGEGXXXXXXXPSVFRFQEAVVEAGGLAAVGCAVDAHPDSAQLRRCGVSALAAIVHDNASTAGQLHSLNLQATVAEDSIRRWPNDPELSCLACWVLRSVVEPPSRLPRQGDPELRGKGDVVLHGGIGGDGGSVVGSKFRLRRKSVEEVEVGSAMP-ENSGESSLQKRNGGGLEGDNSLALGSGDDPRDQSGDANETGGCGGG---VFMEGSTMSGSVFGMGDNETSDLLISLADDDDIDXXXXXXXXXXXXXXXXXXSVSPAXXXXXXXXPVSAVTASSTSNKHRGLEGVPVNEGRWDAPMEQLG---RAGQSTISSESLRAGEPIGSGTREAGEGRVAGQAGVVMAAAFEGEEDGEVLERLLKLAEATK---------------VLNHDNEDTRKAASRLVEAILRQIDSTYVRSSRRRRRASQARVARVLREGQAIGAL 2403
            MKVKQGFKC+VYKTPACRPDEVVDVLPMGTIVTLSTDWG  MEKHPQRGK+GKGKVLWMVEPQEGFLERRPLEDL    GD+A EAEVAAP PHAA V+LTPEERMGIVRGATKMSELLRSTLRRGAYFEGAAGVH F+EVHRAALRAAATLMRKDPASRE LLECRGIELF+ IV+KFCEEDR+LCEYGCWALAVFAGEG       PSVFRFQEAVVEAGGLAAVG AVDAH DSAQLRR GVSALAAIVH+NASTAGQLHSLNL ATVAEDSIRRWPNDPELSCLACWVLRSVVEPPSRLPRQGD EL GKGDVVL GGI GDGGSVVGSKFR+RRKSVEEVEVGSAMP ENSGESSLQKRNGGG EG++SLALGSGDDPRDQ GDA+ETG        VFMEGSTMSGSVFGMGDNETSDLLISLADDDD+D                  SVSPA        PVS VTASS + KH+GLEGVPVNEGR DAPME+LG    AGQSTISSES R G  IG GT+EAGEGRVA Q GVVMAAAF+GEEDG+VLERLLKLAEATK               VLNHDNEDTRKAASRLV AILRQIDSTYVRSSRRRRRASQARVARVLREGQAIGAL
Sbjct:    1 MKVKQGFKCKVYKTPACRPDEVVDVLPMGTIVTLSTDWGGAMEKHPQRGKSGKGKVLWMVEPQEGFLERRPLEDLQPKGGDDAVEAEVAAPSPHAAAVALTPEERMGIVRGATKMSELLRSTLRRGAYFEGAAGVHCFVEVHRAALRAAATLMRKDPASRERLLECRGIELFIQIVNKFCEEDRVLCEYGCWALAVFAGEGDSDSD--PSVFRFQEAVVEAGGLAAVGYAVDAHRDSAQLRRYGVSALAAIVHENASTAGQLHSLNLHATVAEDSIRRWPNDPELSCLACWVLRSVVEPPSRLPRQGDLELGGKGDVVLLGGISGDGGSVVGSKFRMRRKSVEEVEVGSAMPAENSGESSLQKRNGGGSEGNSSLALGSGDDPRDQLGDADETGXXXXXXXXVFMEGSTMSGSVFGMGDNETSDLLISLADDDDVDDATTATGRKPSSPLGQAGSVSPAASTITAAAPVSGVTASSAAKKHQGLEGVPVNEGRRDAPMEKLGGEVHAGQSTISSESPRGGASIGGGTKEAGEGRVAVQVGVVMAAAFKGEEDGDVLERLLKLAEATKGRVTTRRNEIRFARKVLNHDNEDTRKAASRLVGAILRQIDSTYVRSSRRRRRASQARVARVLREGQAIGAL 636

The following BLAST results are available for this feature:

BLAST of Ec-00_005760.1 vs. uniprot

BLAST of Ec-00_005760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G2D6_ECTSI	0.000e+0	99.83	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L5W5_9PHAE	0.000e+0	81.97	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:9249168..9256643 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	2885
Hectar predicted targeting category	other localisation
Gene id	Ec-00_005760.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_005760	Ec-00_005760	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 9249168..9256643 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_005760.1	Ec-00_005760.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 9249250..9256165 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_005760.1.1	Ec-00_005760.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 9249168..9249318 +
Ec-00_005760.1.2	Ec-00_005760.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 9249683..9249868 +
Ec-00_005760.1.3	Ec-00_005760.1.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 9250371..9250532 +
Ec-00_005760.1.4	Ec-00_005760.1.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 9251028..9251147 +
Ec-00_005760.1.5	Ec-00_005760.1.5	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 9251862..9252004 +
Ec-00_005760.1.6	Ec-00_005760.1.6	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 9252484..9252742 +
Ec-00_005760.1.7	Ec-00_005760.1.7	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 9253089..9253156 +
Ec-00_005760.1.8	Ec-00_005760.1.8	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 9254414..9254605 +
Ec-00_005760.1.9	Ec-00_005760.1.9	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 9254731..9255685 +
Ec-00_005760.1.10	Ec-00_005760.1.10	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 9255995..9256643 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_005760	5UTR:Ec-00_005760.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 9249168..9249249 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_005760.1	CDS:Ec-00_005760.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 9249250..9249318 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_005760	3UTR:Ec-00_005760.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 9256166..9256643 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:9249168..9256643+
coding sequence from alignment at chr_00:9249168..9256643+

mRNA sequence

>Ec-00_005760.1 ID=Ec-00_005760.1|Name=Ec-00_005760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=775bp
MHKRVLFQDISVTIFKEGDRSIQVKISVRIHAGHAQSAWAPFLNHVKHEL
ELEDIEGIYDDAVGAPVIRTASLIDGGLYFARPTEVSAMLRSLVRTEQER
YPAWPSIEKGLEAKRELERCREYYEQQLLPMSLATRENKAVRVEVSPHES
DSLAELWAMKVKQGFKCRVYKTPACRPDEVVDVLPMGTIVTLSTDWGEVM
EKHPQRGKNGKGKVLWMVEPQEGFLERRPLEDLPANRGDEADEAEVAAPP
PHAAPVSLTPEERMGIVRGATKMSELLRSTLRRGAYFEGAAGVHSFLEVH
RAALRAAATLMRKDPASREGLLECRGIELFVLIVSKFCEEDRLLCEYGCW
ALAVFAGEGDSDSDSDPSVFRFQEAVVEAGGLAAVGCAVDAHPDSAQLRR
CGVSALAAIVHDNASTAGQLHSLNLQATVAEDSIRRWPNDPELSCLACWV
LRSVVEPPSRLPRQGDPELRGKGDVVLHGGIGGDGGSVVGSKFRLRRKSV
EEVEVGSAMPENSGESSLQKRNGGGLEGDNSLALGSGDDPRDQSGDANET
GGCGGGVFMEGSTMSGSVFGMGDNETSDLLISLADDDDIDDATTATGRKP
SSPSGQAGSVSPAASTTTAAAPVSAVTASSTSNKHRGLEGVPVNEGRWDA
PMEQLGRAGQSTISSESLRAGEPIGSGTREAGEGRVAGQAGVVMAAAFEG
EEDGEVLERLLKLAEATKVLNHDNEDTRKAASRLVEAILRQIDSTYVRSS
RRRRRASQARVARVLREGQAIGAL*

spliced messenger RNA

>Ec-00_005760.1 ID=Ec-00_005760.1|Name=Ec-00_005760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2885bp|location=Sequence derived from alignment at chr_00:9249168..9256643+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TCCATCTATATTTCCCGCTAGGTAAAGGACGAGTGGATTCTGAGTACAAC
GATAACTCCGGGGAATCAATTTACTGCAGGAGATGCACAAGAGAGTTTTG
TTCCAAGATATCTCTGTGACGATTTTCAAAGAGGGAGATCGGTCGATTCA
GGTCAAGATTTCTGTACGTATCCATGCGGGCCACGCTCAGTCTGCTTGGG
CGCCCTTCCTCAATCACGTAAAGCACGAATTGGAGCTTGAAGACATCGAA
GGGATCTACGACGATGCGGTCGGCGCACCAGTTATACGTACCGCCAGTCT
CATCGACGGTGGTTTATACTTTGCAAGACCTACGGAGGTGTCAGCCATGC
TCAGAAGTCTAGTACGAACGGAGCAGGAGCGCTATCCGGCATGGCCAAGC
ATCGAGAAAGGGCTTGAAGCCAAGCGAGAGCTCGAGCGCTGTAGAGAGTA
CTACGAGCAACAACTGCTTCCCATGTCTTTGGCAACTAGGGAAAATAAGG
CGGTACGTGTTGAGGTTTCCCCTCATGAAAGCGATTCACTGGCGGAGCTA
TGGGCAATGAAGGTTAAGCAGGGGTTCAAGTGCCGAGTGTACAAGACGCC
GGCTTGTCGGCCGGATGAGGTGGTAGATGTTCTTCCGATGGGCACGATAG
TCACACTGTCAACGGACTGGGGAGAGGTGATGGAGAAGCACCCCCAGAGA
GGGAAAAATGGGAAGGGCAAGGTGCTGTGGATGGTCGAACCACAAGAGGG
ATTCCTGGAGAGGAGGCCGCTGGAGGACCTGCCGGCGAATCGCGGTGACG
AGGCCGACGAGGCCGAAGTAGCAGCACCACCGCCACATGCTGCTCCTGTC
TCTTTGACTCCCGAGGAAAGGATGGGGATTGTCCGAGGCGCAACGAAGAT
GTCCGAGCTGCTGCGCTCGACCCTTCGAAGAGGGGCGTACTTCGAGGGAG
CGGCCGGTGTGCATAGCTTCTTAGAGGTCCATCGAGCGGCGCTGAGGGCT
GCAGCTACGCTGATGCGAAAGGATCCGGCGTCGCGGGAGGGTCTGTTGGA
GTGCCGGGGAATCGAGCTCTTCGTTCTCATTGTCAGCAAGTTCTGCGAGG
AAGACAGACTGCTTTGCGAGTACGGGTGCTGGGCCCTCGCCGTCTTCGCC
GGAGAGGGGGACTCGGACTCGGACTCGGACCCGAGCGTGTTTCGGTTTCA
GGAGGCCGTGGTGGAGGCGGGGGGGCTGGCAGCGGTGGGGTGTGCCGTGG
ACGCTCACCCCGACTCTGCGCAGCTACGCAGGTGCGGAGTCAGCGCCTTA
GCCGCGATCGTCCACGACAATGCCTCAACCGCGGGGCAACTCCACTCCCT
AAACCTACAAGCTACAGTGGCCGAAGATTCCATCCGCCGCTGGCCCAACG
ACCCCGAGCTGAGCTGCCTGGCTTGCTGGGTGTTGCGGTCTGTTGTGGAG
CCGCCATCGAGGTTGCCCAGGCAAGGCGATCCCGAACTCAGAGGCAAGGG
AGATGTGGTTCTTCATGGCGGGATCGGTGGCGATGGTGGCAGCGTCGTCG
GCAGCAAATTCCGACTGCGAAGAAAGAGTGTCGAGGAGGTGGAGGTGGGT
TCGGCGATGCCAGAGAACAGTGGAGAGAGCTCGCTCCAAAAGAGGAACGG
CGGTGGCTTGGAGGGAGACAATTCTCTTGCCCTCGGGAGTGGGGATGATC
CCCGCGATCAATCGGGTGATGCCAATGAGACAGGCGGCTGCGGTGGTGGA
GTGTTCATGGAGGGGAGCACGATGAGTGGAAGCGTGTTCGGGATGGGAGA
CAATGAAACGAGCGATCTCCTCATTAGCCTCGCTGACGACGACGATATCG
ACGATGCAACTACCGCAACCGGACGGAAACCCTCGTCGCCCTCCGGGCAA
GCCGGTAGCGTAAGCCCAGCGGCGTCAACAACCACAGCGGCAGCCCCGGT
TTCTGCCGTGACCGCCTCTTCCACAAGCAATAAGCACCGGGGACTCGAGG
GTGTCCCAGTGAATGAGGGGCGATGGGACGCCCCAATGGAGCAGTTGGGT
AGAGCTGGGCAATCTACCATCAGCAGCGAAAGCCTCAGAGCGGGGGAACC
GATTGGCAGCGGAACGAGGGAGGCCGGGGAAGGGCGTGTCGCTGGCCAGG
CGGGAGTTGTTATGGCGGCGGCGTTTGAAGGTGAAGAGGACGGAGAGGTG
CTCGAGAGGTTGCTCAAGCTGGCGGAGGCGACCAAGGTGTTGAACCATGA
CAACGAAGACACCCGCAAGGCCGCGTCTCGTCTGGTGGAAGCAATCCTAC
GGCAGATCGACTCGACCTACGTCCGCAGCTCGAGGCGAAGGAGAAGGGCT
AGCCAGGCTAGGGTAGCCCGCGTTCTCAGGGAGGGGCAGGCGATCGGGGC
CTTGTAACTGGGAGCGCGAGCTACTACAACCTCAGCATGCTCAGAGCAAT
GAAATTGAAACAGAAAAAGGCCGGTGCTTCAATACTACAGTTAGCGCCCG
AAATTAAGAAACGCTTATTTCAGGACCTGTCCAGCCTCGAATTCTTATTG
TGGGCTATAAACTCAGCGTATGTCGTTCAATTTCTTATGTCAAGTTTCAC
ATTTTTTCGTGCCGCGAAATACTGCTGAATTTCTTAAATTGAATTTCTTA
AATCGGCAATTTCTTACTCTTCTCTGCTTGCTTTGTACATTACAAAACGT
TCAAATTAAACAAATGATTTGCCCTCACGAGAGCTGGAGGAGAGCACCAT
CAAAACCATACAGCAGACAGCATATCGTGGTTCGCAGCCTGATTGTCTGG
TGTGCTGTCCCAGAGCCGGAGCGCCAGAGAGCCCCAGAGCCGGCATGAGG
CCGGAGGAAGCGCCGCAAAACAAACACACTCCCCC

protein sequence of Ec-00_005760.1

>Ec-00_005760.1 ID=Ec-00_005760.1|Name=Ec-00_005760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=775bp
MHKRVLFQDISVTIFKEGDRSIQVKISVRIHAGHAQSAWAPFLNHVKHEL
ELEDIEGIYDDAVGAPVIRTASLIDGGLYFARPTEVSAMLRSLVRTEQER
YPAWPSIEKGLEAKRELERCREYYEQQLLPMSLATRENKAVRVEVSPHES
DSLAELWAMKVKQGFKCRVYKTPACRPDEVVDVLPMGTIVTLSTDWGEVM
EKHPQRGKNGKGKVLWMVEPQEGFLERRPLEDLPANRGDEADEAEVAAPP
PHAAPVSLTPEERMGIVRGATKMSELLRSTLRRGAYFEGAAGVHSFLEVH
RAALRAAATLMRKDPASREGLLECRGIELFVLIVSKFCEEDRLLCEYGCW
ALAVFAGEGDSDSDSDPSVFRFQEAVVEAGGLAAVGCAVDAHPDSAQLRR
CGVSALAAIVHDNASTAGQLHSLNLQATVAEDSIRRWPNDPELSCLACWV
LRSVVEPPSRLPRQGDPELRGKGDVVLHGGIGGDGGSVVGSKFRLRRKSV
EEVEVGSAMPENSGESSLQKRNGGGLEGDNSLALGSGDDPRDQSGDANET
GGCGGGVFMEGSTMSGSVFGMGDNETSDLLISLADDDDIDDATTATGRKP
SSPSGQAGSVSPAASTTTAAAPVSAVTASSTSNKHRGLEGVPVNEGRWDA
PMEQLGRAGQSTISSESLRAGEPIGSGTREAGEGRVAGQAGVVMAAAFEG
EEDGEVLERLLKLAEATKVLNHDNEDTRKAASRLVEAILRQIDSTYVRSS
RRRRRASQARVARVLREGQAIGAL*

mRNA from alignment at chr_00:9249168..9256643+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_005760.1 ID=Ec-00_005760.1|Name=Ec-00_005760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=7476bp|location=Sequence derived from alignment at chr_00:9249168..9256643+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TCCATCTATATTTCCCGCTAGGTAAAGGACGAGTGGATTCTGAGTACAAC
GATAACTCCGGGGAATCAATTTACTGCAGGAGATGCACAAGAGAGTTTTG
TTCCAAGATATCTCTGTGACGATTTTCAAAGAGGGAGATCGGTCGATTCA
GGTAAGCAATTGCGCTGGCGCTGGCGTAGAGCTGTAAAGAGCCCCTCTAA
GCCATCAACTCTCCGTGCTTGTTTGTCCGAGGATTGTGCGACAAATCCCC
GACGTTTTCAACACAAAATCACGAGCGACTATTGATTGTTAGTCTAGAAT
ACCTGTGGTAGTCGAGCACAAGGATGCCAAATAGCTGCCGTAGGCGCACG
CGCCAGATGGCTGAGGCTGCCAAACAGTCTAGTCCTCAAACTCTATCACG
CTCTACTTGTAGGCATCGGAATGGTTGCCATTGCAGCTGCCGTACATTTT
CAAAGAGCCCCAATGCCACTGCTGTATGTACGTACCTTCCTCCCCCATCT
TCTACCCTGGCAAAGGTCAAGATTTCTGTACGTATCCATGCGGGCCACGC
TCAGTCTGCTTGGGCGCCCTTCCTCAATCACGTAAAGCACGAATTGGAGC
TTGAAGACATCGAAGGGATCTACGACGATGCGGTCGGCGCACCAGTTATA
CGTACCGCCAGTCTCATCGACGGTGGTTTATACTTTGCAAGACCTACGGA
GGTATGGCCCCATGTTGTCGGGCACACATATACTAGCCGAAAATTGGTTG
AGCCATGTAATGCGTCTATGTAGACTACTGTAGTGCTCGCCGACATCCTG
GAGTACACTGAGAAAACACGGGTATGAGAGAGTAAAAAAATCGCAGGTTC
ATCTGAGCTGCGCGTACCACTTCACTGCCGGTACATGCAGGTTTTGAACG
CCCCACCACTTCGATTATCGTTGCTAGATGTCCGTTAGCCCCCGAGTTCT
TGCGACTCCGAGTCAATCAAAACAACGATGTCAATATGACACGAAGGCGA
ACAATGACAAGCAGGATTCGGAAAGTATCACATGTGTGTTACGTTACGTT
CAAGGGGCTCCTGCCGTCCAGGCTTGTGGCAGAGGTACCGAGCTTCAACA
ACAACTGTGTTAGCCTTTTCAGGTCGTTTCGGACAATAGAGTAAGGCGCT
GTCCGGTTTGCCAAGTACGAGTTGCGAGACCTCTGTCATCGCACCACCAA
CAGGTGTCAGCCATGCTCAGAAGTCTAGTACGAACGGAGCAGGAGCGCTA
TCCGGCATGGCCAAGCATCGAGAAAGGGCTTGAAGCCAAGCGAGAGCTCG
AGCGCTGTAGAGAGTACTACGAGCAACAACTGCTTCCCATGTCTTTGGCA
ACTAGGGAAAATAAGGTCTGGAGCTCGGTGGTCTCAACGGGACAATGTCT
AGTCTAGGGGCTACGGGCCAAACAAAGAAAACGACTGCCGTGCGAAAGGA
CGGGGCTCGAAATAAATGATAAATATTCTGTGGTTTGGCCAAATACCCTA
CTCTAGTGAGTGGAACAGTAAGTGGCGTCAGCGGGCTTCAGATGTTCGCG
ATGCATGTGCAACGAAGTCCATACTCGATCGATTGAGAAAATAAGACACA
TAGAGCTCTAGCACGACTTTCAAAGTTATTCTTACCGCAGTGCTGCTGCC
GTCCGAACCCTAACCCGGCATAGATTCCACACCAACACACACATCTCTAC
ACACCGCGTCACCGATAGGAATGTTTGTATGTGATGTTTCAGAGAATTTT
TACTCCTACACCGCTCCTGTGGCATTCTGTTTCCCATGCGTGAGACGCCT
CTTCTGCGCCCCGACTCTTGCGCAATTGCCGATCTTTTTCTGTCCTCGCG
GTTCCCGTAGGCGGTACGTGTTGAGGTTTCCCCTCATGAAAGCGATTCAC
TGGCGGAGCTATGGGCAATGAAGGTTAAGCAGGGGTTCAAGTGCCGAGTG
TACAAGACGCCGGCTTGTCGGCCGGATGAGGTGAGAAGACCTCCTTGTTT
TGTAACGTGATGTGCACCTCTGCACTAGAATCGTCTCGATGCTGTATGGG
GCTGGTCCGATCACAGATGATGCAGGTTGTCGTTGAATTCCTTTGTTCTC
CTTGGTGCTGTTTTCCTTTCGCATTGCTTGTACATCATGCAGCCGGAATC
CAACTCAACTTCTGATGACGCCAAATGGCCATGGCAACGTGCCATCACAT
GACTACCTCCAAATACTAAAACAGCGAAAATTCAAATTTCTACCTCTACA
TTATTGCTGCACGCCACGTGCTCCGTGCATATTTGCACGGAACACCTGCG
TTTTTTTCAACAACCAGAGAAGTATGATATGACGTCATCTCGGAGTGTTC
TGGTGACGGGAAGAACGGGCACACACATATTTCCGCCTACAGATAATATA
GTTATTGTATACGCGAAAGATTGGACGGGGAGTCCTTGGAATCAACGCTA
CATAGCCCTAGAACTACACCACATCCCTCACACGCGAAAATAAATTGACT
ACTGTAGAATACAGAGTAGTATACTTTCACTGTTCGATTCATTCGTCGCT
TCGAAGCACGGCTGTGGCTTGGTCATATCTTTCACTAACAAGCCTTCTGA
ACTCAATACTCCTGGTATGCAGTATTCCCACGGGCGGTTGGCTTCCCCGC
TTGCCTCCGAACACCTGCGTAACCTCAACCATAACGTCAGTCAGGTGGTA
GATGTTCTTCCGATGGGCACGATAGTCACACTGTCAACGGACTGGGGAGA
GGTGATGGAGAAGCACCCCCAGAGAGGGAAAAATGGGAAGGGCAAGGTGC
TGTGGATGGTCGAACCACAAGAGGGATTCCTGGAGAGGTGGGGTGACGAG
GCGTGTACAGGCACTCTTCTTCTCGTTAGGCTTCCAAAACGGAGGCGGTA
TGATGCGTTACGACATGTTACAAAATGCTTTCGTTGGCTTCAATCCATGG
AAGTGAATGGTTTGCTTATTTTCTGGCTTCGACAGCGTTGCTGAGAAACC
TCCTACACTGTGTGCGCCCCTGTTCATGCATGTGCTTCTGACGGTTGCCC
CGAAACGAGAGAGCCATAGAAAATACGAGAGAACGATAGGCAGCGGAGCA
ACGAAGGACCTTGTCAACAGAGGGCGGTCTACTCACAGTTATGAGAGTCC
AAAGGGAGTGAAAAGGGGTGTGAACGGAAAAATGTGGAGTACGAATCACT
CAAAATATTATCTAGGAGACGTATTCGGACAGCACAATTTGGACTCACGA
GATGACCCGACTACACGTTTTCATTGGGATTACTCCCTACGCGGTCTTCT
TTCGCCTGCTCCGTAGGAGGCCGCTGGAGGACCTGCCGGCGAATCGCGGT
GACGAGGCCGACGAGGCCGAAGTAGCAGCACCACCGCCACATGCTGCTCC
TGTCTCTTTGACTCCCGAGGAAAGGATGGGGATTGTCCGAGGCGCAACGA
AGATGTCCGAGCTGCTGCGCTCGACCCTTCGAAGAGGGGCGTACTTCGAG
GGAGCGGCCGGTGTGCATAGCTTCTTAGAGGTCCATCGAGCGGCGCTGAG
GGCTGCAGCTACGCTGATGCGAAAGGTGCGTTTCGCGATGCGGTCCATTC
CTGTGTTGGCTGCTGTATCCTCACGGTACAGCCGTAGGTTTAGAAACTAG
AACGATACCGGGAAATCAACGGAGTCCACATAGCAACCGGGCAACGGGAA
CAGAAGCAAGGACCTAAGAGGCAGCATCTCCCCATGACTGTGTCCTGACC
GCGCTCTTCAATCCTCCATGCCTGCTTTTTCCTCCTACGCGCACCTCTCA
CCCAGTATTTGACATGGTGTTGCGTGTGCTGGCTCCCTACTGCCGCCCTG
TGTCCTCCCGCGAATCAACAACGCAAACGTCTTTTGTACACACTCGTTCA
TGAATTGTGTGCTCTGTCAAGGATCCGGCGTCGCGGGAGGGTCTGTTGGA
GTGCCGGGGAATCGAGCTCTTCGTTCTCATTGTCAGCAAGTGAGTCTGTC
AGAGCTCGCCCTTCGTACCTAGCTCGTGGTGAATAGTGAATAGCCCCTCG
TGGAGGCTCTTGCTTCAAAAAAAGAGTTGATTGACCTCGTACCCCCAGGT
TTCGCATGAGCTAAATAGCTCGTGGGGGTTCCCTCCTGAATGTGTCCATT
GCAACGAGTTGAACCAATATTCTCGGCTTTTTCGGTTGGCATAGGTGACT
CTATTTCCCTACGCCGTAGTCTGCATGCCTCGAATGTGGACTCACATTCC
GCCGTGTTTGCTGAGTCCTTCTGAACCGTTTACGGTGGCCGTGTTGTCCT
CACGAGCGGAACTCTAACCTGTTGGTTGTTGAGCGTATGTGAAGCCACCA
CCCGTGACTTGTTGGTGCAAAGTCGACTGTTTCCATTCATAATATGGGTA
TCGACCTTGAGTGCGCCCACTTCCTTCTCGTTTCTTGCGCTTGAGGGAAC
GAACCCCCCACGACGGTGTTTTGCCCTCGATAGAGCTGACCCTGTGTCGT
AGAATCACTGAACTCACTCGCCCTGAGACTCTCGCCGAAGCAATGCTGTG
CGCAATGAGTCGACAACGGCTGTTCGTCTGTCAGGATCCGATACTTGCTC
ATGGGTTGATGACCTTCTGTCACAAAAAGTCGATTTTTTTCCTCATGCGA
CCAGGTTGTTCCACCAACATGGTATTATATCGTTTGAGAACAACCGTCCG
GCTTGCAGGCCGCCACGGCCACTGCTCATGTGTACGGCAGTGGCTCAATG
GGCGGCTGGACAGTTTCTCTCCAACCCAGACGCCTAGACTAAGACGGCGA
AGAAGCCGAAGGCGGCTTGTGCCGACGGGACCAACGTAGAACATCAAACC
CACCATTCCTCATCCCCTACAAAGCTGTGAGGTAGATCCGCGTCCGAGCT
CTTTGTGCTCTCATCGGAAGTTGGGCCATATACTGAGGGGGTCAGACTCC
AGTGACAAACCGGGCTGACTTCTTGAGAAACAACATCGTACAAGCCAAAC
TAATGTCCTCCCGCTTAGCCCTCCCCTTCTTCATACTTTCGCCGGTCACG
ATGCCCCTCACGCCCCCCACAATAACCAACTCTGCAGCCGTCGCCATGCG
AACGACACGCAGCAGCCTGCTATGGTTCTCCTGCCCTCCCGTCTGACTCC
CTCCCGAGGATGATCACGTCTTTCGAGCCTCCTCACTCCGATCCTCCTGT
GAAATCACCGACAACCAAACGACAACACAACAAAATGGCAAAGCAGGTTC
TGCGAGGAAGACAGACTGCTTTGCGAGTACGGGTGCTGGGCCCTCGCCGT
CTTCGCCGGAGAGGGGGACTCGGACTCGGACTCGGACCCGAGCGTGTTTC
GGTTTCAGGAGGCCGTGGTGGAGGCGGGGGGGCTGGCAGCGGTGGGGTGT
GCCGTGGACGCTCACCCCGACTCTGCGCAGCTACGCAGGTAGGAGGAGTC
CAACTTCGATATCGTGAAAGGGTTCTTGTACCTGCCCTCGCTAAGACGCT
GGGCGAAACATCGACAGCATCAGCATCAGAATTAATCAACGACTTTTCCT
CGTCGCTCACCAGGTGCGGAGTCAGCGCCTTAGCCGCGATCGTCCACGAC
AATGCCTCAACCGCGGGGCAACTCCACTCCCTAAACCTACAAGCTACAGT
GGCCGAAGATTCCATCCGCCGCTGGCCCAACGACCCCGAGCTGAGCTGCC
TGGCTTGCTGGGTGTTGCGGTCTGTTGTGGAGCCGCCATCGAGGTTGCCC
AGGCAAGGCGATCCCGAACTCAGAGGCAAGGGAGATGTGGTTCTTCATGG
CGGGATCGGTGGCGATGGTGGCAGCGTCGTCGGCAGCAAATTCCGACTGC
GAAGAAAGAGTGTCGAGGAGGTGGAGGTGGGTTCGGCGATGCCAGAGAAC
AGTGGAGAGAGCTCGCTCCAAAAGAGGAACGGCGGTGGCTTGGAGGGAGA
CAATTCTCTTGCCCTCGGGAGTGGGGATGATCCCCGCGATCAATCGGGTG
ATGCCAATGAGACAGGCGGCTGCGGTGGTGGAGTGTTCATGGAGGGGAGC
ACGATGAGTGGAAGCGTGTTCGGGATGGGAGACAATGAAACGAGCGATCT
CCTCATTAGCCTCGCTGACGACGACGATATCGACGATGCAACTACCGCAA
CCGGACGGAAACCCTCGTCGCCCTCCGGGCAAGCCGGTAGCGTAAGCCCA
GCGGCGTCAACAACCACAGCGGCAGCCCCGGTTTCTGCCGTGACCGCCTC
TTCCACAAGCAATAAGCACCGGGGACTCGAGGGTGTCCCAGTGAATGAGG
GGCGATGGGACGCCCCAATGGAGCAGTTGGGTAGAGCTGGGCAATCTACC
ATCAGCAGCGAAAGCCTCAGAGCGGGGGAACCGATTGGCAGCGGAACGAG
GGAGGCCGGGGAAGGGCGTGTCGCTGGCCAGGCGGGAGTTGTTATGGCGG
CGGCGTTTGAAGGTGAAGAGGACGGAGAGGTGCTCGAGAGGTTGCTCAAG
CTGGCGGAGGCGACCAAGGTGCAGCACGAGACCCTAAATTAATTGGACTG
CTATTTAGCACAGCAGTTGTTGGCCGACATTTCGAGCAGTGTTCCGCTTG
TTGTGCCACGCCATTAATAAACTCCGATCAGATTATTTGAGGTTTGCAGT
ATATCCATGGCTCACGTCTTGTGCTGAGAAACAAGATACATTGAAAGCCA
GTAAAAAAGAGCTTAGACCCGAGCTACATGCTACCCTCCCGACGCTGGAA
GCACAGCCACACGTTTTGACAAGATTATCTGAAGGGACGAAACAACACGA
CGTAACGTACTTCGATTCGCCCGGAAGGTGTTGAACCATGACAACGAAGA
CACCCGCAAGGCCGCGTCTCGTCTGGTGGAAGCAATCCTACGGCAGATCG
ACTCGACCTACGTCCGCAGCTCGAGGCGAAGGAGAAGGGCTAGCCAGGCT
AGGGTAGCCCGCGTTCTCAGGGAGGGGCAGGCGATCGGGGCCTTGTAACT
GGGAGCGCGAGCTACTACAACCTCAGCATGCTCAGAGCAATGAAATTGAA
ACAGAAAAAGGCCGGTGCTTCAATACTACAGTTAGCGCCCGAAATTAAGA
AACGCTTATTTCAGGACCTGTCCAGCCTCGAATTCTTATTGTGGGCTATA
AACTCAGCGTATGTCGTTCAATTTCTTATGTCAAGTTTCACATTTTTTCG
TGCCGCGAAATACTGCTGAATTTCTTAAATTGAATTTCTTAAATCGGCAA
TTTCTTACTCTTCTCTGCTTGCTTTGTACATTACAAAACGTTCAAATTAA
ACAAATGATTTGCCCTCACGAGAGCTGGAGGAGAGCACCATCAAAACCAT
ACAGCAGACAGCATATCGTGGTTCGCAGCCTGATTGTCTGGTGTGCTGTC
CCAGAGCCGGAGCGCCAGAGAGCCCCAGAGCCGGCATGAGGCCGGAGGAA
GCGCCGCAAAACAAACACACTCCCCC

Coding sequence (CDS) from alignment at chr_00:9249168..9256643+

>Ec-00_005760.1 ID=Ec-00_005760.1|Name=Ec-00_005760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=2325bp|location=Sequence derived from alignment at chr_00:9249168..9256643+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACAAGAGAGTTTTGTTCCAAGATATCTCTGTGACGATTTTCAAAGA
GGGAGATCGGTCGATTCAGGTCAAGATTTCTGTACGTATCCATGCGGGCC
ACGCTCAGTCTGCTTGGGCGCCCTTCCTCAATCACGTAAAGCACGAATTG
GAGCTTGAAGACATCGAAGGGATCTACGACGATGCGGTCGGCGCACCAGT
TATACGTACCGCCAGTCTCATCGACGGTGGTTTATACTTTGCAAGACCTA
CGGAGGTGTCAGCCATGCTCAGAAGTCTAGTACGAACGGAGCAGGAGCGC
TATCCGGCATGGCCAAGCATCGAGAAAGGGCTTGAAGCCAAGCGAGAGCT
CGAGCGCTGTAGAGAGTACTACGAGCAACAACTGCTTCCCATGTCTTTGG
CAACTAGGGAAAATAAGGCGGTACGTGTTGAGGTTTCCCCTCATGAAAGC
GATTCACTGGCGGAGCTATGGGCAATGAAGGTTAAGCAGGGGTTCAAGTG
CCGAGTGTACAAGACGCCGGCTTGTCGGCCGGATGAGGTGGTAGATGTTC
TTCCGATGGGCACGATAGTCACACTGTCAACGGACTGGGGAGAGGTGATG
GAGAAGCACCCCCAGAGAGGGAAAAATGGGAAGGGCAAGGTGCTGTGGAT
GGTCGAACCACAAGAGGGATTCCTGGAGAGGAGGCCGCTGGAGGACCTGC
CGGCGAATCGCGGTGACGAGGCCGACGAGGCCGAAGTAGCAGCACCACCG
CCACATGCTGCTCCTGTCTCTTTGACTCCCGAGGAAAGGATGGGGATTGT
CCGAGGCGCAACGAAGATGTCCGAGCTGCTGCGCTCGACCCTTCGAAGAG
GGGCGTACTTCGAGGGAGCGGCCGGTGTGCATAGCTTCTTAGAGGTCCAT
CGAGCGGCGCTGAGGGCTGCAGCTACGCTGATGCGAAAGGATCCGGCGTC
GCGGGAGGGTCTGTTGGAGTGCCGGGGAATCGAGCTCTTCGTTCTCATTG
TCAGCAAGTTCTGCGAGGAAGACAGACTGCTTTGCGAGTACGGGTGCTGG
GCCCTCGCCGTCTTCGCCGGAGAGGGGGACTCGGACTCGGACTCGGACCC
GAGCGTGTTTCGGTTTCAGGAGGCCGTGGTGGAGGCGGGGGGGCTGGCAG
CGGTGGGGTGTGCCGTGGACGCTCACCCCGACTCTGCGCAGCTACGCAGG
TGCGGAGTCAGCGCCTTAGCCGCGATCGTCCACGACAATGCCTCAACCGC
GGGGCAACTCCACTCCCTAAACCTACAAGCTACAGTGGCCGAAGATTCCA
TCCGCCGCTGGCCCAACGACCCCGAGCTGAGCTGCCTGGCTTGCTGGGTG
TTGCGGTCTGTTGTGGAGCCGCCATCGAGGTTGCCCAGGCAAGGCGATCC
CGAACTCAGAGGCAAGGGAGATGTGGTTCTTCATGGCGGGATCGGTGGCG
ATGGTGGCAGCGTCGTCGGCAGCAAATTCCGACTGCGAAGAAAGAGTGTC
GAGGAGGTGGAGGTGGGTTCGGCGATGCCAGAGAACAGTGGAGAGAGCTC
GCTCCAAAAGAGGAACGGCGGTGGCTTGGAGGGAGACAATTCTCTTGCCC
TCGGGAGTGGGGATGATCCCCGCGATCAATCGGGTGATGCCAATGAGACA
GGCGGCTGCGGTGGTGGAGTGTTCATGGAGGGGAGCACGATGAGTGGAAG
CGTGTTCGGGATGGGAGACAATGAAACGAGCGATCTCCTCATTAGCCTCG
CTGACGACGACGATATCGACGATGCAACTACCGCAACCGGACGGAAACCC
TCGTCGCCCTCCGGGCAAGCCGGTAGCGTAAGCCCAGCGGCGTCAACAAC
CACAGCGGCAGCCCCGGTTTCTGCCGTGACCGCCTCTTCCACAAGCAATA
AGCACCGGGGACTCGAGGGTGTCCCAGTGAATGAGGGGCGATGGGACGCC
CCAATGGAGCAGTTGGGTAGAGCTGGGCAATCTACCATCAGCAGCGAAAG
CCTCAGAGCGGGGGAACCGATTGGCAGCGGAACGAGGGAGGCCGGGGAAG
GGCGTGTCGCTGGCCAGGCGGGAGTTGTTATGGCGGCGGCGTTTGAAGGT
GAAGAGGACGGAGAGGTGCTCGAGAGGTTGCTCAAGCTGGCGGAGGCGAC
CAAGGTGTTGAACCATGACAACGAAGACACCCGCAAGGCCGCGTCTCGTC
TGGTGGAAGCAATCCTACGGCAGATCGACTCGACCTACGTCCGCAGCTCG
AGGCGAAGGAGAAGGGCTAGCCAGGCTAGGGTAGCCCGCGTTCTCAGGGA
GGGGCAGGCGATCGGGGCCTTGTAA

Synonyms

The feature 'Ec-00_005760.1' has the following synonyms


Synonym
Esi0471_0001
Esi_0471_0001