Ec-00_005040.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005040.2
Unique NameEc-00_005040.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length412
Homology
[Close]
BLAST of Ec-00_005040.2 vs. uniprot
Match: A0A6H5KL03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL03_9PHAE)

HSP 1 Score: 343 bits (879), Expect = 2.240e-103
Identity = 198/396 (50.00%), Postives = 245/396 (61.87%), Query Frame = 2 
Query:  947 HTHPNRSGVL-LFSKMSRGETFSPASRWPNEFEEAYKAVEVRTQLLENLANFKDLVALVTNRIPGITRFQGFHIVREGGWMVVTVKLKMHHDAWLGFSSDGKSVGSGSGFNPWRLMRCNAVRLEGTPPYQLKKVPDEIIHQVQLRQEASWLKLPAAFPGDYAKHDQVKKEHRDSILTLKMTGSRLFDLDTEWLPREEMDXXXXXXXXXXXXXQVGIDGXXXSEASFSSQDSSDEGLGGDERLQQEGLQQQXXXXXXXXXRSQEQPEFPHGTPKTFAFFKTVGAPFLVGKVLEERVANGKREVSLHWYTPATRSLVDGAATATFDTYAGGVFSPDYVEDPTAGGSSS--SSRPAIRPDVSWEEVDSIVATCPALISGGKKIPAGVKRI---LKGGGP 2116
            HTH     +   F+K  +G          + F   YK VEV+ + LENLANFKDLVA VT RIP IT +Q F I +EG  MVVTVK KMHH+ WLGFS DGK+VGSG+GF+PWRLM  +AV LE TPPY+LK V D++IH+V +RQ+ASW KLP A+ GD  K  +VK +H DS+  L+ TG++ FDLDT WLP +                  G DG   S       D+S  G   DERL+Q   QQ          R ++Q  + HGT  TF+FF + GAPFLVGKV+++R  +G+ EV+LHWYTP  R LVD AA  +FDTYAG  FSP Y+    AG ++S  +SR  + PD SWE V  IVATC ALISGG KIPA VK+      GGGP
Sbjct:  256 HTHIQIDQIFSCFAKAVKGVDIFTREELGDAFRRGYKKVEVKCRTLENLANFKDLVAPVTRRIPTITNYQAFKIYKEGPSMVVTVKKKMHHEDWLGFSEDGKTVGSGAGFSPWRLMHAHAVHLEATPPYELKLVQDDVIHRVDMRQQASWEKLPVAYVGDPEKQKRVKLDHADSLRILRTTGTKAFDLDTSWLPLQVSGDDSESDPGD------GGDGGGLSHGLSDDDDNSSFGDYLDERLRQH--QQSGSAPQGGGRRLRDQQTWAHGTMNTFSFFLSDGAPFLVGKVIDKREVDGQEEVALHWYTPRKR-LVDSAANVSFDTYAGASFSPTYI----AGDANSRVNSRRKLLPDSSWEPVSGIVATCSALISGGSKIPAHVKQXPWQASGGGP 638
[Close]
BLAST of Ec-00_005040.2 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 1.780e-51
Identity = 174/529 (32.89%), Postives = 241/529 (45.56%), Query Frame = 2 
Query:   32 CSHSHHCSSVSTTRRTVVTKTLDHAKEDGVVTFLEHIQRTRGQSMPNSSDTYLYMKHKKTCTTNTAGTTTT--GGSPCATSRWAWTSCCVPRTTSTRPGRRLIQT*SSEQTATS*SASCAPCSRARSTGGGLPVSPGC-----RTKHR--WTSSARNTRST*RRGTRPEHDRQAESRNAGGPSARYTNEQVLISADGANQTNYVTPSVAARAHGIDDRDGRSEARYT--------------------ESSSRVS*WMFRSFLRFWAEYKSRRHGAVQPADVAGRKVWQVPRRRELSTGQHRFGEQEQLPHGFLGGDDWEGSDEHRHLVLHDGWP-HTHPNRSGVL-LFSKMSRGETFSPASRWPNEFEEAYKAVEVRTQLLENLANFKDLVALVTNRIPGITRFQGFHIVREGGWMVVTVKLKMHHDAWLGFSSDGKSVGSGSGFNPWRLMRCNAVRLEGTPPYQLKKVPDEIIHQVQLRQEASWLKLPAAFPGDYAKHDQVKKEHRDSILTLKMTGSRLFDLDTEWLP 1525
            C  +    + S+  R  +  T D  K +GVV FL   +   GQ MPNS  +YLY+K K       +  T    G  P + +    +     +  S   G   ++              C  C+  +    G   S G      R +H+  +    ++       G R E+   A +++ G P      E V +  D ANQ+N+ TP  A++AHG+DDR G +E +                        S+ V   +F  F+    ++K          D              +S  ++ F        GFL      G    R + L      HTH     V   F++  +G            FE AYK + V+ + LENLANFKDLV  VT RIP IT+FQ F+I +EG  +V  VK K+HHD WLGFS+DGK+VG+G+GF  WRLMR   VRLE TP Y LK V +EII ++Q RQEASW +LPA    D    +QVK +H DS+  L+M G R FDL+T WLP
Sbjct:  225 CKKTPKAQASSSVHRASIASTRDRPKLEGVVAFLHRHEDMYGQKMPNSDQSYLYLKSKLELYEEYSKNTRELYGQDPASLAERLCSKNYFNQVWSAHFGNLKLKPNGDFML-------CEICTLLKEKIHGQAGSRGVLDEAERERHQSVYKEHLQDVERDRMYGARLENQA-AVAKSNGTPW-----ETVYLQVDAANQSNFATPIGASQAHGVDDR-GYAERQKIYGALVSGIMMQVFMIPQILGTGSNMVCTTLFTLFMELTLQWKHSLGDVFIQMD------------NTVSENKNNF------IMGFLAA--LVGRGVMRSVTLCFMMVGHTHIQIDQVFSCFARSVKGCAVFTREHLAEFFESAYKTLPVKCRTLENLANFKDLVQPVTRRIPNITKFQAFNISKEGTAIVAKVKTKLHHDDWLGFSADGKTVGTGAGFTGWRLMRERDVRLEETPSYLLKTVDEEIIRKIQTRQEASWKRLPAFVSLD---PEQVKAQHLDSLRVLRMQGRRNFDLETNWLP 716
[Close]
BLAST of Ec-00_005040.2 vs. uniprot
Match: A0A6H5L233_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L233_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 3.580e-41
Identity = 80/153 (52.29%), Postives = 104/153 (67.97%), Query Frame = 2 
Query:  968 GVLLFSKMSRGETFSPASRWPNEFEEAYKAVEVRTQLLENLANFKDLVALVTNRIPGITRFQGFHIVREGGWMVVTVKLKMHHDAWLGFSSDGKSVGSGSGFNPWRLMRCNAVRLEGTPPYQLKKVPDEIIHQVQLRQEASWLKLPAAFPGDY 1426
            GV +F++   G+ F             YK ++V+ + LE+LANFK+LVA VT RIP IT ++ F I ++G  +VVTVK KMHH+ WLGFS DGK+VGS +GF PWRLM  +AV L+ TPPY+LK V DEIIH+  LRQ+ASW  LP A  G +
Sbjct:   91 GVEIFTREEVGDAFR----------RGYKKIQVKCRTLEHLANFKELVAPVTRRIPIITNYRAFKIYKKGPSVVVTVKKKMHHEDWLGFSEDGKTVGSRAGFRPWRLMHAHAVYLKATPPYELKLVQDEIIHRGDLRQQASWENLPVANAGGF 233
[Close]
BLAST of Ec-00_005040.2 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 3.100e-40
Identity = 129/401 (32.17%), Postives = 183/401 (45.64%), Query Frame = 2 
Query:  947 HTHPNRSGVLL-FSKMSRGETFSPASRWPNEFEEAYKAVEVRTQLLENLANFKDLVALVTNRIPGITRFQGFHIVREG-GWMVVTVKLKMHHDAWLGFSSDGKSVGSGSGFNPWRLMRCNAVRLEGTPPYQLKKVPDEIIHQVQLRQEASWLKLPAAFPGDYAKHDQVKKEHRDSILTLKMTGSRLFDLDTEWLPREEMDXXXXXXXXXXXXXQVGIDGXXXSEASFSSQDSSDEGLGGDERLQQEGLQQQXXXXXXXXXRSQEQPEFPHGTPKT------------FAFFKTVGAPFLVGKVLEERVAN-GKREVSLHWYTPATRSLVDGAATATFDTYAGGVFSPDYVEDPTAGGSSSSSRPAIRPDVSWEEVDSIVATCPALISGGKKIPAGVKRILK 2104
            HTH     V   FS+  +G+     +    E   +Y  V V    L N  NFK L+    NR+P IT ++ F + + G G + V VK  MH   W G   DG          P  L   +  R++  PPY+LK+VP+++I +V+ R  AS  +L AAFP D     + K E + S+  L+ TG R FDL   WLP  +                VG D    ++A    QD +  G    + +  E              R + +P    G P T            FAFF    APFLVG+++ ER+   G+R V LHW  P++  L + AA+ T   Y+   F   +V D T  G+  S +     DVSWE V+ IVATC  L+  G+K+P  V R+L+
Sbjct:  261 HTHTKIDQVFSRFSRGIKGKNIFTRTHLAEELRASYTEVPVFCSTLRNEGNFKGLLIGRVNRVPNITTYRAFRVEKGGDGRVKVRVKKHMHGAEWNGIHEDGNLNPDAL---PHDLFIGSPPRIQDAPPYKLKRVPEDVIQKVEQRYLASHERLAAAFPLDDGAVQRAKDEQKQSVRLLRQTGEREFDLPVHWLPVYDSGSGDEE--------NVGPDTGDNNDAE---QDFNGSGGHDHDGIDDEADDTSSDSDMEPEFRRRGRPRAT-GRPTTDRSPPISVQVGSFAFFVARRAPFLVGRIVAERLGEEGERGVDLHWLRPSSDYLSNNAASVTLREYSNSTFVEGFVLD-TCNGNGRSGKAKRVKDVSWEPVEGIVATCERLVGNGRKVPTKVLRVLR 645
[Close]
BLAST of Ec-00_005040.2 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.290e-10
Identity = 63/220 (28.64%), Postives = 100/220 (45.45%), Query Frame = 3 
Query:  354 RRRLHEVPAVHPVQGRDLRGGGFRCHRGAGPSTDGPQARGIPEALKDVELDRNMIAKLRAETREARARGTPMNRC*YQRMARIKPTT*PLPLLLGRMASTTGMG-GARQGIRSPRRGCRDGCFV------RSSGSGRSTNLVATALYNQLMSLVAKYGK-----FLGDVSFLLDNTVSENKNNYLMGFLAAMIGRGVMNTVTLYFMMVGHTHTQIDQVFS 977
            + +LH  P + P+Q    R    R  +               E    V  DR ++       R  +A GTP+N+   Q+    +     +   LG +   T  G   RQ + + +    +G FV      +++G G  +NLV TAL+  L  L A   K     ++  +   LDN V ENKNN ++ F+  ++  GV+ +  + F++VGHTH +IDQVFS
Sbjct:   10 KEKLHGAPGIRPIQNTRQRAEIVRHQK---------------EHHHIVSKDRELLTSRMEAARREQANGTPLNQVTIQQDCACQ-----IRYALGTVHPQTHAGFSERQKVMAVQ---AEGAFVDVHFVPQTTGGG--SNLVCTALWLALKRLSAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFS 204
[Close]
BLAST of Ec-00_005040.2 vs. uniprot
Match: K1RDW3_CRAGI (Uncharacterized protein n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1RDW3_CRAGI)

HSP 1 Score: 68.2 bits (165), Expect = 6.390e-10
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 3 
Query:  726 SSGSGRSTNLVATALYNQLMSLVAKYGKFLGDVSFL-LDNTVSENKNNYLMGFLAAMIGRGVMNTVTLYFMMVGHTHTQIDQVFS 977
            S     STNL  + L    +S++    + L DV +L +DN   ENKN YL+ F+A ++G+GV   + + F+MVGHT+  IDQVFS
Sbjct:   55 SGSDSHSTNLTLSVL----LSVIYMLRESLPDVFYLQMDNCARENKNRYLLAFMAYLVGKGVFRKIKVSFLMVGHTNEDIDQVFS 135
[Close]
BLAST of Ec-00_005040.2 vs. uniprot
Match: D7G078_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G078_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 9.640e-10
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 3 
Query:  486 LKDVELDRNMIAKLRAETREARARGTPMNRC 578
            LKDVELDRNMIAKLRAETREARARGTPMNRC
Sbjct:   17 LKDVELDRNMIAKLRAETREARARGTPMNRC 47
[Close]
BLAST of Ec-00_005040.2 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.860e-8
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 3 
Query:  747 TNLVATALYNQLMSLVAKYGK-----FLGDVSFLLDNTVSENKNNYLMGFLAAMIGRGVMNTVTLYFMMVGHTHTQIDQVFS 977
            +NLV TAL+  L  L A + K     ++  +   LDN V ENKNN ++ F+  ++  GV+ +  + F++VGHTH +IDQVFS
Sbjct:   11 SNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFS 92
[Close]
BLAST of Ec-00_005040.2 vs. uniprot
Match: UPI00148ACA18 (uncharacterized protein LOC117686175 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148ACA18)

HSP 1 Score: 66.2 bits (160), Expect = 2.500e-8
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 3 
Query:  741 RSTNLVATALYNQLMSLVAKYGKFLGDVSFL-LDNTVSENKNNYLMGFLAAMIGRGVMNTVTLYFMMVGHTHTQIDQVFSS 980
            +STNL  + L    +S++    + L DV  L +DN   ENKN+YL+ F+A ++ +GV   + + F+MVGHTH  IDQVFS+
Sbjct:   49 QSTNLTLSVL----LSVIYMLRESLPDVPHLQMDNCARENKNSYLLAFMAYLVEKGVFRKIKVSFLMVGHTHEDIDQVFST 125
[Close]
BLAST of Ec-00_005040.2 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.850e-8
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 3 
Query:  735 SGRSTNLVATALYNQLMSLVAKYGK-----FLGDVSFLLDNTVSENKNNYLMGFLAAMIGRGVMNTVTLYFMMVGHTHTQIDQVFS 977
            +G  +NLV TAL+  L  L   + K      +  +   LDN V ENKNN +M F+  ++  GV+ +  + F++VGHTHT+ DQVFS
Sbjct:  234 TGGGSNLVCTALWLALKRLSEMWNKPGERFHIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIGSAEVCFLIVGHTHTKTDQVFS 319
The following BLAST results are available for this feature:
BLAST of Ec-00_005040.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL03_9PHAE2.240e-10350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJG9_9PHAE1.780e-5132.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L233_9PHAE3.580e-4152.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUU1_9PHAE3.100e-4032.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE3.290e-1028.64Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
K1RDW3_CRAGI6.390e-1042.35Uncharacterized protein n=1 Tax=Crassostrea gigas ... [more]
D7G078_ECTSI9.640e-10100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN27_9PHAE1.860e-841.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00148ACA182.500e-843.21uncharacterized protein LOC117686175 n=1 Tax=Crass... [more]
A0A6H5KK38_9PHAE6.850e-840.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:7472923..7477663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length2230
Hectar predicted targeting categoryother localisation
Gene idEc-00_005040.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005040Ec-00_005040Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 7472923..7480160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005040.2Ec-00_005040.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 7472923..7474391 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005040.2.7Ec-00_005040.2.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7472923..7473725 -
Ec-00_005040.2.6Ec-00_005040.2.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7473959..7474402 -
Ec-00_005040.2.5Ec-00_005040.2.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7474725..7474959 -
Ec-00_005040.2.4Ec-00_005040.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7475201..7475289 -
Ec-00_005040.2.3Ec-00_005040.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7475791..7475956 -
Ec-00_005040.2.2Ec-00_005040.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7476441..7476725 -
Ec-00_005040.2.1Ec-00_005040.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 7477456..7477663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005040.2CDS:Ec-00_005040.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 7472923..7473725 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0050405UTR:Ec-00_005040.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 7474392..7474402 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005040.2 ID=Ec-00_005040.2|Name=Ec-00_005040.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=412bp
MSRGETFSPASRWPNEFEEAYKAVEVRTQLLENLANFKDLVALVTNRIPG
ITRFQGFHIVREGGWMVVTVKLKMHHDAWLGFSSDGKSVGSGSGFNPWRL
MRCNAVRLEGTPPYQLKKVPDEIIHQVQLRQEASWLKLPAAFPGDYAKHD
QVKKEHRDSILTLKMTGSRLFDLDTEWLPREEMDDDDDDVDDDDYGGQVG
IDGGGGSEASFSSQDSSDEGLGGDERLQQEGLQQQQRSRSRKKSRSQEQP
EFPHGTPKTFAFFKTVGAPFLVGKVLEERVANGKREVSLHWYTPATRSLV
DGAATATFDTYAGGVFSPDYVEDPTAGGSSSSSRPAIRPDVSWEEVDSIV
ATCPALISGGKKIPAGVKRILKGGGPDNDDDVDNIPTAGESNVRVGTKRK
GRPSKPPAEGEE
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spliced messenger RNA

>Ec-00_005040.2 ID=Ec-00_005040.2|Name=Ec-00_005040.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2230bp|location=Sequence derived from alignment at chr_00:7472923..7477663- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CTATCTATTGTTATTTTTCGTATCCGCCCTTTGCTCCCACTCTCATCACT
GCTCATCGGTGTCTACGACGAGAAGAACGGTGGTAACAAAAACACTCGAC
CATGCTAAGGAAGATGGTGTTGTTACCTTCCTCGAGCACATCCAGAGAAC
GCGCGGGCAGTCGATGCCCAACAGCTCCGACACCTACCTGTACATGAAGC
ACAAGAAGGACTTGTACCACGAATACTGCAGGTACTACAACAACGGGAGG
GTCTCCGTGCGCGACGTCGCGGTGGGCGTGGACGTCATGTTGTGTACCCA
GGACTACTTCTACAAGACCTGGGCGAAGACTTATCCAAACTTGAAGCTCA
GAGCAGACGGCGACTTCATGAAGTGCCAGCTGTGCACCCTGTTCAAGGGC
GAGATCTACGGGGGGGGGGCTTCCGGTGTCACCGGGGTGCAGGACCAAGC
ACAGATGGACCTCAAGCGCGCGGAATACCAGAAGCACTTAAAGGACGTGG
AACTCGACCGGAACATGATCGCCAAGCTGAGAGCAGAAACGCGGGAGGCC
CGAGCGCGAGGTACACCAATGAACAGGTGCTAATATCAGCGGATGGCGCG
AATCAAACCAACTACGTGACCCCTTCCGTTGCTGCTCGGGCGCATGGCAT
CGACGACAAGGGATGGGCGGAGCGAGGCAAGGTATACGGAGTCCTCGTCG
AGGGTGTCGTGATGGATGTTTCGTTCGTTCCTCAGGTTCTGGGCGGAGGT
ACAAATCTCGTCGCCACGGCGCTGTACAACCAGCTGATGTCGCTGGTCGC
AAAGTATGGCAAGTTCCTCGGAGACGTGAGCTTTCTACTGGACAACACCG
TTTCGGAGAACAAGAACAACTACCTCATGGGTTTCTTGGCGGCGATGATT
GGGAGGGGAGTGATGAACACCGTCACCTTGTACTTCATGATGGTTGGCCA
CACACACACCCAAATCGATCAGGTGTTCTCCTGCTTCTCCAAACATGTCA
AGGGGCGAGACATTTTCACCCGCCAGCAGATGGCCAAACGAGTTCGAGGA
AGCCTACAAGGCCGTCGAGGTGCGAACCCAACTGCTTGAAAATCTCGCCA
ACTTCAAGGACCTGGTGGCGCTGGTTACTAACCGAATACCGGGCATCACG
AGGTTCCAGGGGTTTCACATCGTGAGAGAGGGGGGTTGGATGGTGGTGAC
GGTCAAGCTCAAGATGCACCACGACGCCTGGCTGGGCTTCAGCTCGGACG
GGAAAAGCGTTGGGAGCGGGTCCGGTTTCAACCCCTGGCGCCTCATGCGT
TGCAATGCAGTGCGCTTGGAGGGAACCCCACCGTACCAGCTGAAGAAGGT
GCCCGACGAGATTATCCACCAGGTCCAACTGCGACAGGAGGCGTCATGGC
TAAAGCTGCCGGCCGCCTTTCCTGGAGACTACGCAAAGCACGACCAAGTC
AAGAAAGAACACCGGGACAGCATTCTGACGCTCAAGATGACGGGGTCGCG
GTTGTTCGACCTCGATACGGAATGGCTTCCTCGGGAGGAAATGGACGACG
ACGACGACGACGTGGACGACGATGATTACGGCGGACAAGTCGGCATTGAC
GGAGGAGGTGGCAGCGAGGCCAGCTTTTCCTCCCAGGACAGTTCGGACGA
AGGTCTCGGTGGTGACGAACGCCTGCAACAAGAAGGGCTACAACAACAAC
AGCGCTCTCGCTCTAGAAAGAAAAGCCGCTCCCAGGAGCAACCGGAATTT
CCTCACGGGACGCCGAAAACGTTCGCTTTCTTCAAGACCGTCGGCGCACC
GTTTTTGGTGGGGAAAGTGCTAGAGGAGAGGGTGGCGAATGGAAAACGGG
AGGTCTCTCTTCATTGGTACACCCCTGCTACGAGGAGTCTCGTCGACGGG
GCCGCGACGGCTACCTTCGACACTTACGCGGGAGGGGTGTTCTCTCCCGA
CTACGTCGAGGACCCCACGGCCGGCGGTAGCAGCAGCAGCAGCCGCCCCG
CAATTCGCCCGGATGTGTCGTGGGAGGAAGTGGACAGTATTGTAGCAACG
TGTCCTGCGCTCATCTCCGGCGGCAAGAAGATCCCAGCGGGGGTTAAACG
GATACTGAAGGGGGGAGGACCAGACAACGACGACGATGTTGACAACATTC
CCACGGCAGGCGAAAGCAACGTCAGGGTAGGAACAAAACGTAAGGGTCGG
CCTTCAAAACCACCGGCCGAGGGAGAGGAG
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protein sequence of Ec-00_005040.2

>Ec-00_005040.2 ID=Ec-00_005040.2|Name=Ec-00_005040.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=412bp
MSRGETFSPASRWPNEFEEAYKAVEVRTQLLENLANFKDLVALVTNRIPG
ITRFQGFHIVREGGWMVVTVKLKMHHDAWLGFSSDGKSVGSGSGFNPWRL
MRCNAVRLEGTPPYQLKKVPDEIIHQVQLRQEASWLKLPAAFPGDYAKHD
QVKKEHRDSILTLKMTGSRLFDLDTEWLPREEMDDDDDDVDDDDYGGQVG
IDGGGGSEASFSSQDSSDEGLGGDERLQQEGLQQQQRSRSRKKSRSQEQP
EFPHGTPKTFAFFKTVGAPFLVGKVLEERVANGKREVSLHWYTPATRSLV
DGAATATFDTYAGGVFSPDYVEDPTAGGSSSSSRPAIRPDVSWEEVDSIV
ATCPALISGGKKIPAGVKRILKGGGPDNDDDVDNIPTAGESNVRVGTKRK
GRPSKPPAEGEE
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mRNA from alignment at chr_00:7472923..7477663-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005040.2 ID=Ec-00_005040.2|Name=Ec-00_005040.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4741bp|location=Sequence derived from alignment at chr_00:7472923..7477663- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CTATCTATTGTTATTTTTCGTATCCGCCCTTTGCTCCCACTCTCATCACT
GCTCATCGGTGTCTACGACGAGAAGAACGGTGGTAACAAAAACACTCGAC
CATGCTAAGGAAGATGGTGTTGTTACCTTCCTCGAGCACATCCAGAGAAC
GCGCGGGCAGTCGATGCCCAACAGCTCCGACACCTACCTGTACATGAAGC
ACAAGAAGGTTAGATATAGTAGTTAGTGTAGATAGATAGGTTCACGACGA
CGACGACAGGACAGACGACATCACTGGCATCACTCCCCGACATGCATGTG
CAGGGGTTGGCCTGATGAAGTGGACGTCGTCCCCACTGCCTTATTATTAG
TAGTTTTTTTCGTATCTATCTCCTCTCTCTGTCATCCTCATCATAATATT
ATTATTATTGTCGAGTTCTCGCAATAAACTTCTTCTACTCCCTTGGTGTG
TAGTACCTCTGTTCTTCCACCCCGACCAAGCGACATCATTCCTCAAACAG
CAGCACGACTGACTGCTGCTGCTGCTGTAGGATGCTTGTTGTGGGGTGCT
CGCTCGCGGATGGATGGATGGGTGTCTTCATCTCAATAATAATTAAATCG
CTGCCGCCACCGGCAGCCCAACCCCGCGCTGTCTGTGCTTGAAGTACTGT
TGATGATATATTATGCGTATATATATATATATAGTTGTTGGTGTTTGTTT
GTTGTTGGTTATTACAATTATTTAGGTTTTAACTATGGCATGCAGCCGCG
CAGGTAGGTACGTATTATCAAATATGAAAATGTGAAATATTTTTATCAAG
GTAGGCACAATTAATTATAGGTATTGTCTTCGTAGGTAGGTAGGTACGTA
CGCGTAGCGTCGTATGTATGTATGTATGTATGTTGATGTTGTATGTAGGG
ACCCATTTCGTCTGCACTCACTCCCTTTTTTGCCGCAGGACTTGTACCAC
GAATACTGCAGGTACTACAACAACGGGAGGGTCTCCGTGCGCGACGTCGC
GGTGGGCGTGGACGTCATGTTGTGTACCCAGGACTACTTCTACAAGACCT
GGGCGAAGACTTATCCAAACTTGAAGCTCAGAGCAGACGGCGACTTCATG
AAGTGCCAGCTGTGCACCCTGTTCAAGGGCGAGATCTACGGGGGGGGGGC
TTCCGGTGTCACCGGGGTGCAGGACCAAGCACAGATGGACCTCAAGCGCG
CGGAATACCAGAAGCACTTAAAGGTGGGTGCTTCCACCGCGGCAAAGCTA
ATGCTTGGCCGCATCGGCCGCCTCCCTGTCTCAGTTGTGCTGTGATTGTT
CTCCGCGATACATACCGTATAGCTCGGACGGGTCGGAGGCAAGGTTACCT
ATACATACATGCATGCATGTATGTTATGATACACTGCCCGTGGTCGACAC
ACGTACGGACGCGTGCATTTTAAGTACTTTACATCTCGTTTACTGCTGCT
ACCCACCCACCTCGTACAAGAACATCATCATCTCCACTGTTGTTCAATGT
CAGTCCCCCCATTATTTGACGGCCGTATGTGTAGTTACGACGGCCCTTGG
AACTGTTGCTGCCATGTTGTGGCTTTCTGTTGATGATGTATGTTTGTATA
TACTCCGTATGAACGACATACACATAATATATAGACACCCTACCTACTAC
CTAAACAGACAGACAGTTTGACAGACAAGGTTTTTCTCTCGCGCGCTGCG
TGGACAGGACGTGGAACTCGACCGGAACATGATCGCCAAGCTGAGAGCAG
AAACGCGGGAGGCCCGAGCGCGAGGTACACCAATGAACAGGTGCTAATAT
CAGCGGATGGCGCGAATCAAACCAACTACGTGACCCCTTCCGTTGCTGCT
CGGGCGCATGGCATCGACGACAAGTAAGTGGGTTCCCGCTCTCAGTTCCC
CCAGCCTCGTTTCTAAAATATGGTGGAAGTAGGTACGGCGTTTGGTTTCT
GTCTATCGTTCATTGCCTGTTCGGGTACGTATGGGCTGAGCTATTCTTTC
TTGGGCTCCGTAACTCTTGATTGAGTAATTTTTGAAAAAAATGTGCCGGT
TCACATACATACACACACACACGTCAACTTCGTCAGCCGGTTAGCGCGGT
CGACGCTAATTACAAACGCACACACACGTCAACAAACATGCGCAAACAAA
CGGACTCCCCGTGCGGGGCCCCAAGCGCGGTCCTTGCTCCCTCCTTGTTG
TTCTTCCTTCCTTTATTTGGGCGATGACAAGACGCCCACCCCGTGACTGA
GACGTTAATTTCTGGACCCAAACTAGTCTCTACATGCCAGTATGGCATCC
GGATGCGTCTGTCTGGCCCTCAATCCGACCCTACGCTGTATCCTTTTATT
GTCTTCATTTGCGGCTGCAACCAGGGGATGGGCGGAGCGAGGCAAGGTAT
ACGGAGTCCTCGTCGAGGGTGTCGTGATGGATGTTTCGTTCGTTCCTCAG
GTTCTGGGCGGAGGTAAGCGTTTTTGTTCAGGTCGCAGCATGTGCCTGAC
AAACAGACCTGTCTGTGGCGCCTTGTCACAGGTTTATGTGTAATATAGGC
ATCTACGACACAGCTCTTTCTTCCGCGAGCCCTGTGCAAAATCGGAAGAG
TTGCTCATGCCGATACTGTGTACCAAGCGTTGTTGTTGTGCCACACTTGA
AATTATTTGTTGTGTTGCTACTACTCGTCCTTTGCACTCGTCGTGTCCTT
CCAGGTACAAATCTCGTCGCCACGGCGCTGTACAACCAGCTGATGTCGCT
GGTCGCAAAGTATGGCAAGTTCCTCGGAGACGTGAGCTTTCTACTGGACA
ACACCGTTTCGGAGAACAAGAACAACTACCTCATGGGTTTCTTGGCGGCG
ATGATTGGGAGGGGAGTGATGAACACCGTCACCTTGTACTTCATGATGGT
TGGCCACACACACACCCAAATCGATCAGGTGTTCTCCTGGTAAGGAAGGG
GGCTCGGGGCTTCCAGATAAAGCGATAGTAACGGTAGACCTGAGATAGTA
AGCACGTCACATGCAAGCCACTAGAAAACACCGCCCGCATCGCCGCGAGC
TTGCCCTAGCTTCTTCTTTTCTGTGTTGTTCAAGTAAAACTCGCCAGTCG
CCTTGCCACTCTACCATGGCACACTCGTCCGTGCGGTTCGTTAAAGTCGC
CTGTACAGCAAAGAGAGGACCATGCTTCGACTGACTCGCACAAAGTTGAA
CCTCTGAGGGCACTGAAGGCTTTATGTGGCCCTTCCTTCCTCGTCGTTCC
TAAGTGCACAGCTTCTCCAAACATGTCAAGGGGCGAGACATTTTCACCCG
CCAGCAGATGGCCAAACGAGTTCGAGGAAGCCTACAAGGCCGTCGAGGTG
CGAACCCAACTGCTTGAAAATCTCGCCAACTTCAAGGACCTGGTGGCGCT
GGTTACTAACCGAATACCGGGCATCACGAGGTTCCAGGGGTTTCACATCG
TGAGAGAGGGGGGTTGGATGGTGGTGACGGTCAAGCTCAAGATGCACCAC
GACGCCTGGCTGGGCTTCAGCTCGGACGGGAAAAGCGTTGGGAGCGGGTC
CGGTTTCAACCCCTGGCGCCTCATGCGTTGCAATGCAGTGCGCTTGGAGG
GAACCCCACCGTACCAGCTGAAGAAGGTGCCCGACGAGATTATCCACCAG
GTCCAACTGCGACAGGAGGCGTCATGGCTAAAGCTGCCGGCCGCCTTTCC
TGGAGGTGAGTGAGATCGCGCCTGCCGAACGTTGTTGGTGCCATATATAT
ATATTAACACCAAGGAGCGACGGCAGAAAGGACGAACACACCAACTAACC
GTACTACTGCTGCTGTACTACCGACGCTGTTTGTGGGGTCTGTCTAAGCG
GTCCATCGCACAACCGACTACTTGCTCTCCTGACATCGCCCCCCCCCCTC
GGTTCCTTTCCGTCGTCGCCGCATCCTCAAATCCTCAGACTACGCAAAGC
ACGACCAAGTCAAGAAAGAACACCGGGACAGCATTCTGACGCTCAAGATG
ACGGGGTCGCGGTTGTTCGACCTCGATACGGAATGGCTTCCTCGGGAGGA
AATGGACGACGACGACGACGACGTGGACGACGATGATTACGGCGGACAAG
TCGGCATTGACGGAGGAGGTGGCAGCGAGGCCAGCTTTTCCTCCCAGGAC
AGTTCGGACGAAGGTCTCGGTGGTGACGAACGCCTGCAACAAGAAGGGCT
ACAACAACAACAGCGCTCTCGCTCTAGAAAGAAAAGCCGCTCCCAGGAGC
AACCGGAATTTCCTCACGGGACGCCGAAAACGTTCGCTTTCTTCAAGACC
GTCGGCGCACCGTTTTTGGTGGGGAAAGTGCTAGAGGAGAGGGTGGCGAA
TGGAAAACGGGAGGTCTCTCTTCATTGGTACACCCCTGCTACGAGGAGTC
TCGTCGACGGGGCCGCGACGGCTACCTTCGACACTTACGCGGGAGGGGTG
TTCTCTCCCGACTACGTCGAGGACCCCACGGCCGGCGGTAGCAGCAGCAG
CAGCCGCCCCGCAATTCGCCCGGATGTGTCGTGGGAGGAAGTGGACAGTA
TTGTAGCAACGTGTCCTGCGCTCATCTCCGGCGGCAAGAAGATCCCAGCG
GGGGTTAAACGGATACTGAAGGGGGGAGGACCAGACAACGACGACGATGT
TGACAACATTCCCACGGCAGGCGAAAGCAACGTCAGGGTAGGAACAAAAC
GTAAGGGTCGGCCTTCAAAACCACCGGCCGAGGGAGAGGAG
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Coding sequence (CDS) from alignment at chr_00:7472923..7477663-

>Ec-00_005040.2 ID=Ec-00_005040.2|Name=Ec-00_005040.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1236bp|location=Sequence derived from alignment at chr_00:7472923..7477663- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCAAGGGGCGAGACATTTTCACCCGCCAGCAGATGGCCAAACGAGTT
CGAGGAAGCCTACAAGGCCGTCGAGGTGCGAACCCAACTGCTTGAAAATC
TCGCCAACTTCAAGGACCTGGTGGCGCTGGTTACTAACCGAATACCGGGC
ATCACGAGGTTCCAGGGGTTTCACATCGTGAGAGAGGGGGGTTGGATGGT
GGTGACGGTCAAGCTCAAGATGCACCACGACGCCTGGCTGGGCTTCAGCT
CGGACGGGAAAAGCGTTGGGAGCGGGTCCGGTTTCAACCCCTGGCGCCTC
ATGCGTTGCAATGCAGTGCGCTTGGAGGGAACCCCACCGTACCAGCTGAA
GAAGGTGCCCGACGAGATTATCCACCAGGTCCAACTGCGACAGGAGGCGT
CATGGCTAAAGCTGCCGGCCGCCTTTCCTGGAGACTACGCAAAGCACGAC
CAAGTCAAGAAAGAACACCGGGACAGCATTCTGACGCTCAAGATGACGGG
GTCGCGGTTGTTCGACCTCGATACGGAATGGCTTCCTCGGGAGGAAATGG
ACGACGACGACGACGACGTGGACGACGATGATTACGGCGGACAAGTCGGC
ATTGACGGAGGAGGTGGCAGCGAGGCCAGCTTTTCCTCCCAGGACAGTTC
GGACGAAGGTCTCGGTGGTGACGAACGCCTGCAACAAGAAGGGCTACAAC
AACAACAGCGCTCTCGCTCTAGAAAGAAAAGCCGCTCCCAGGAGCAACCG
GAATTTCCTCACGGGACGCCGAAAACGTTCGCTTTCTTCAAGACCGTCGG
CGCACCGTTTTTGGTGGGGAAAGTGCTAGAGGAGAGGGTGGCGAATGGAA
AACGGGAGGTCTCTCTTCATTGGTACACCCCTGCTACGAGGAGTCTCGTC
GACGGGGCCGCGACGGCTACCTTCGACACTTACGCGGGAGGGGTGTTCTC
TCCCGACTACGTCGAGGACCCCACGGCCGGCGGTAGCAGCAGCAGCAGCC
GCCCCGCAATTCGCCCGGATGTGTCGTGGGAGGAAGTGGACAGTATTGTA
GCAACGTGTCCTGCGCTCATCTCCGGCGGCAAGAAGATCCCAGCGGGGGT
TAAACGGATACTGAAGGGGGGAGGACCAGACAACGACGACGATGTTGACA
ACATTCCCACGGCAGGCGAAAGCAACGTCAGGGTAGGAACAAAACGTAAG
GGTCGGCCTTCAAAACCACCGGCCGAGGGAGAGGAG
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Synonyms
The feature 'Ec-00_005040.2' has the following synonyms
Synonym
Esi0396_0023
Esi_0396_0023