Ec-00_005170.3 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-00_005170.3
Unique NameEc-00_005170.3
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length236
Homology
BLAST of Ec-00_005170.3 vs. uniprot
Match: D8LMP4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP4_ECTSI)

HSP 1 Score: 384 bits (987), Expect = 5.960e-133
Identity = 214/269 (79.55%), Postives = 214/269 (79.55%), Query Frame = 0
Query:    1 MVAGGECPICQGLLPDEERGILRCVSAAAVPRPSPSIGTILSPPQNHVFCFKCIHKWTKTESACPVCRVEVRSITKTLSLREIEQFNVRTP----------------------------------IPFTVTKAVRVKLRTQMKEMNRLLADAPHPQCRWKNRGLQRRRPDLPLHLDSLALGLLPQQLLVVVPPVVLPVGRTDGARVPAATLLRAAXXXXMAVVVGGRSGSGFASRPGAAPVVPSKKRGARQSGQLLGGTCSPATEPPPS 235
            MVAGGECPICQGLLPDEERGILRC                     NHVFCFKCIHKWTKTESACPVCRVEVRSITKTLSLREIEQFNVRTP                                  IPFTVTKAVRVKLRTQMKEMNRLLADAPHPQCRWKNRGLQRRRPDLPLHLDSLALGLLPQQLLVVVPPVVLPVGRTDGARVPAATLLRAAXXXXMAVVVGGRSGSGFASRPGAAPVVPSKKRGARQSGQLLGGTCSPATEPPPS
Sbjct:   35 MVAGGECPICQGLLPDEERGILRC---------------------NHVFCFKCIHKWTKTESACPVCRVEVRSITKTLSLREIEQFNVRTPHDPSQVRTKAQIKRARAKRFKCRKPASVVFDDIYIPFTVTKAVRVKLRTQMKEMNRLLADAPHPQCRWKNRGLQRRRPDLPLHLDSLALGLLPQQLLVVVPPVVLPVGRTDGARVPAATLLRAAXXXXMAVVVGGRSGSGFASRPGAAPVVPSKKRGARQSGQLLGGTCSPATEPPPS 282          
BLAST of Ec-00_005170.3 vs. uniprot
Match: A0A6H5JR52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR52_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 5.380e-15
Identity = 50/89 (56.18%), Postives = 57/89 (64.04%), Query Frame = 0
Query:    1 MVAGGECPICQGLLPDEERGILRCVSAAAVPRPSPSIGTILSPPQNHVFCFKCIHKWTKTESACPVCRVEVRSITKTLSLREIEQFNVR 89
            MVAGGEC ICQGLLPDEERGILRC+SA A    +     +L      +  F C        S+C    ++VRSITKTLSLREIEQFNVR
Sbjct:   40 MVAGGECVICQGLLPDEERGILRCLSAVAELNIAAIAEFLLL-----LVVFSCC----SGSSSC----LKVRSITKTLSLREIEQFNVR 115          
BLAST of Ec-00_005170.3 vs. uniprot
Match: D7FGV7_ECTSI (Similar to PHD finger family protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV7_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 4.720e-11
Identity = 44/121 (36.36%), Postives = 56/121 (46.28%), Query Frame = 0
Query:    7 CPICQGLLPDEERGILRCVSAAAVPRPSPSIGTILSPPQNHVFCFKCIHKWTKTESACPVCRVEVRSITKTLSLREIEQFNVRTPIPFTVTKAVRVKLRTQMKEMNRLLADAPHPQCRWKN 127
            C IC   LP+ ERG+L C                      HVFCF CIH+WTK  S CP CRV+++ ITKTLS  +  +    T  P    + ++ K R Q+K        A H   R KN
Sbjct:  176 CAICCDKLPNLERGVLSC---------------------GHVFCFACIHQWTKNSSICPGCRVQIKRITKTLSPADEAKAKGETRKPVVSQRGMKKKPRKQLKR-------ARHRDSRAKN 268          
BLAST of Ec-00_005170.3 vs. uniprot
Match: A0A6H5K2A7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A7_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.650e-10
Identity = 38/94 (40.43%), Postives = 47/94 (50.00%), Query Frame = 0
Query:    7 CPICQGLLPDEERGILRCVSAAAVPRPSPSIGTILSPPQNHVFCFKCIHKWTKTESACPVCRVEVRSITKTLSLREIEQFN--VRTPIPFTVTK 98
            C IC   LPD ERG+L C                      HVFCF CIH+WTK  S CP CRV+++ ITKTLS  +  +     R P+   VT+
Sbjct:   80 CAICCDKLPDLERGVLSC---------------------GHVFCFACIHQWTKNSSICPGCRVQIKRITKTLSPADEAKSKGETRKPVSLAVTR 152          
BLAST of Ec-00_005170.3 vs. uniprot
Match: D8LMP5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP5_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 8.360e-10
Identity = 49/138 (35.51%), Postives = 61/138 (44.20%), Query Frame = 0
Query:    7 CPICQGLLPDEERGILRCVSAAAVPRPSPSIGTILSPPQNHVFCFKCIHKWTKTE-SACPVCRVEVRSITKTLSLREIEQFNV-RTPI----------------PFTVTKAVRVKLRTQMK---EMNRLLADAPHPQC 123
            CPICQ LLP+E RGI++C                      HVFC KC+ +W K + ++CP CR +V  I KTLSL E  + N  R P+                PF        K+R   K   E  R  A APHPQ 
Sbjct:   57 CPICQDLLPEENRGIVKC---------------------GHVFCLKCVLQWVKKQQNSCPTCRAKVCHIKKTLSLAEALEKNANRKPLTKAQLKRTKRKSTIGKPFPKPDITTEKIRVHKKVSREQIRQNAMAPHPQA 173          
BLAST of Ec-00_005170.3 vs. uniprot
Match: A0A6H5JQU9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU9_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 8.420e-10
Identity = 45/136 (33.09%), Postives = 62/136 (45.59%), Query Frame = 0
Query:    4 GGECPICQGLLPDEERGILRCVSAAAVPRPSPSIGTILSPPQNHVFCFKCIHKWTKTE-SACPVCRVEVRSITKTLSLREIEQFNVRTPIPFTVTKAVRVKLRTQMKEMNRLLA-DAPHPQCRWKNRGLQRRRPDL 137
            G  CPICQ LLP+E RGIL+C                      HVFC KC+ +W K + ++CP CR EV  I +TLS  E  + N     P           + Q+K   R  A   P P  R+    + +++PD+
Sbjct:   78 GDRCPICQDLLPEENRGILKC---------------------GHVFCLKCVLQWVKKQQNSCPTCRAEVCHIKRTLSSAEALEKNADRKPP----------RKAQLKRAKRKSAVGKPSPGDRYSESDVLQQKPDI 182          
The following BLAST results are available for this feature:
BLAST of Ec-00_005170.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LMP4_ECTSI5.960e-13379.55RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JR52_9PHAE5.380e-1556.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGV7_ECTSI4.720e-1136.36Similar to PHD finger family protein, partial n=1 ... [more]
A0A6H5K2A7_9PHAE1.650e-1040.43RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LMP5_ECTSI8.360e-1035.51RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQU9_9PHAE8.420e-1033.09RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 3..87
e-value: 2.2E-12
score: 48.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 46..68
e-value: 1.5E-6
score: 28.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 7..68
score: 9.893
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 46..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:7875878..7881236 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005170.3Ec-00_005170.3Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_00 7875115..7884117 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-00_005170.3 ID=Ec-00_005170.3|Name=Ec-00_005170.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=236bp
MVAGGECPICQGLLPDEERGILRCVSAAAVPRPSPSIGTILSPPQNHVFC
FKCIHKWTKTESACPVCRVEVRSITKTLSLREIEQFNVRTPIPFTVTKAV
RVKLRTQMKEMNRLLADAPHPQCRWKNRGLQRRRPDLPLHLDSLALGLLP
QQLLVVVPPVVLPVGRTDGARVPAATLLRAAAAAVMAVVVGGRSGSGFAS
RPGAAPVVPSKKRGARQSGQLLGGTCSPATEPPPS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING