Ec-28_001660.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_001660.1
Unique NameEc-28_001660.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length205
Homology
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BLAST of Ec-28_001660.1 vs. uniprot
Match: D7FXP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP9_ECTSI)

HSP 1 Score: 387 bits (994), Expect = 9.220e-136
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1 
Query:    1 MWSAERQIDGLTARNAQLETHLACLEADVQTYHRVHDLLQTDLLCTIRDGETTLGKKDAEICSLTKDREIERLKAQLLHSKEVDGAQDIADRSTEPPSPSLHSRWGSADNVDGASIFRAGNNSADSKTPCGRKAPNASAAIIAAAGTFVYSKASRRATDKLATNVIATSAVSDADSFAAEALIADARLEAWGLTMRRAATSAGN 612
            MWSAERQIDGLTARNAQLETHLACLEADVQTYHRVHDLLQTDLLCTIRDGETTLGKKDAEICSLTKDREIERLKAQLLHSKEVDGAQDIADRSTEPPSPSLHSRWGSADNVDGASIFRAGNNSADSKTPCGRKAPNASAAIIAAAGTFVYSKASRRATDKLATNVIATSAVSDADSFAAEALIADARLEAWGLTMRRAATSAGN
Sbjct:    1 MWSAERQIDGLTARNAQLETHLACLEADVQTYHRVHDLLQTDLLCTIRDGETTLGKKDAEICSLTKDREIERLKAQLLHSKEVDGAQDIADRSTEPPSPSLHSRWGSADNVDGASIFRAGNNSADSKTPCGRKAPNASAAIIAAAGTFVYSKASRRATDKLATNVIATSAVSDADSFAAEALIADARLEAWGLTMRRAATSAGN 204
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BLAST of Ec-28_001660.1 vs. uniprot
Match: D7FU49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU49_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 2.260e-85
Identity = 160/222 (72.07%), Postives = 170/222 (76.58%), Query Frame = 1 
Query:    1 MWSAERQIDGLTARNAQLETHLACLEADVQTYHRVHDLLQTDLLCTIRDGETTLGKKDAEICSLTKDR------------EIERLKAQLL----HSKEVDGAQDIADRSTEPPSPSLHSRWGSADNVDGASIFRAGNNSADSKTPCGRKAPNASAAIIAAA--GTFVYSKASRRATDKLATNVIATSAVSDADSFAAEALIADARLEAWGLTMRRAATSAGN 612
            MW AERQIDGLTAR AQLET+LA LEAD QT  R+HD LQTDL+CTIRD ETTLGKKDAEICSLTKD             EIERLK QL       ++VDGAQDIADRSTEPPSPSLHSRWGS   VDGASIFRA N SA  K P GRK P++SAA+IAAA  GTFVYSKASRRAT K AT ++  S VSDAD  AAEALIADA LEAWGLTMR A TSAGN
Sbjct:  171 MWCAERQIDGLTARKAQLETNLALLEADAQTCDRLHDQLQTDLMCTIRDDETTLGKKDAEICSLTKDNDILRQVNGDKDSEIERLKTQLALRVKDPEKVDGAQDIADRSTEPPSPSLHSRWGS---VDGASIFRASNTSAAFKAPVGRKTPDSSAAVIAAAAAGTFVYSKASRRATVKSATKIVVASTVSDADRAAAEALIADAGLEAWGLTMR-ATTSAGN 388
[Close]
BLAST of Ec-28_001660.1 vs. uniprot
Match: D7G509_ECTSI (Uncharacterized protein n=5 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G509_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 3.310e-25
Identity = 93/218 (42.66%), Postives = 115/218 (52.75%), Query Frame = 1 
Query:    1 MWSAERQIDGLTARNAQLETHLACLEADVQTYHRVHDLLQTDLLCTIRDGETTLGKKDAEICSLT------------KDREIERLKAQLLHSKEVDGAQDIADRSTEPPSPSLHSRWGSADNVDGASIFRAGNNSADSKTPCGRKAPNASAAIIA--AAGTFVYSKASRRATDKLATNVIATSAVSDADSFAAEALIADARLEAWGLTMRRAATSAGN 612
            MW AER +D LT  NA LE  LACLEADVQT H ++D  ++D LC++RDGET L  KDAEI SL             KD EI+ LKAQL  + ++   Q+      E P  S            G S F+A  + + S         ++SAA+IA  A+GTFV SKASR  T  +AT     +   D    AAE LIAD  L  W L+    ATSAGN
Sbjct:  170 MWCAERTVDSLTGANALLENKLACLEADVQTGHDLYDQFRSDFLCSLRDGETALSHKDAEISSLKQDNAQLVKANQDKDEEIKLLKAQL--AMQLKQPQEACTAGGEAPRTSA-----------GVSSFQAKGHPSVST--------DSSAAVIATAASGTFV-SKASRSGTKSVATTTYLDTTADD--KAAAEFLIADTALAHWWLSAT--ATSAGN 361
The following BLAST results are available for this feature:
BLAST of Ec-28_001660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FXP9_ECTSI9.220e-136100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU49_ECTSI2.260e-8572.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G509_ECTSI3.310e-2542.66Uncharacterized protein n=5 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:1451011..1453529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length615
Hectar predicted targeting categoryother localisation
Gene idEc-28_001660.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_001660Ec-28_001660Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 1449879..1453529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001660.1Ec-28_001660.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 1451011..1453529 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001660.1.6Ec-28_001660.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1451011..1451017 -
Ec-28_001660.1.5Ec-28_001660.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1451469..1451777 -
Ec-28_001660.1.4Ec-28_001660.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1452247..1452298 -
Ec-28_001660.1.3Ec-28_001660.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1452794..1452842 -
Ec-28_001660.1.2Ec-28_001660.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1453098..1453211 -
Ec-28_001660.1.1Ec-28_001660.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1453446..1453529 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001660.1CDS:Ec-28_001660.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 1451011..1451017 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_001660.1 ID=Ec-28_001660.1|Name=Ec-28_001660.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=205bp
MWSAERQIDGLTARNAQLETHLACLEADVQTYHRVHDLLQTDLLCTIRDG
ETTLGKKDAEICSLTKDREIERLKAQLLHSKEVDGAQDIADRSTEPPSPS
LHSRWGSADNVDGASIFRAGNNSADSKTPCGRKAPNASAAIIAAAGTFVY
SKASRRATDKLATNVIATSAVSDADSFAAEALIADARLEAWGLTMRRAAT
SAGN*
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spliced messenger RNA

>Ec-28_001660.1 ID=Ec-28_001660.1|Name=Ec-28_001660.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=615bp|location=Sequence derived from alignment at chr_28:1451011..1453529- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGTCCGCCGAGCGACAGATCGACGGGCTGACGGCGAGGAATGCCCA
GCTCGAGACACACCTTGCTTGCTTGGAGGCGGACGTCCAGACGTACCACC
GAGTGCACGACCTGCTGCAAACTGATCTCCTGTGCACGATCCGCGACGGC
GAGACGACTCTGGGCAAGAAGGATGCGGAGATATGCTCTCTGACCAAGGA
CCGAGAGATCGAACGCCTCAAGGCTCAGCTCCTCCACTCCAAGGAAGTTG
ACGGCGCGCAGGACATCGCCGACCGCTCGACCGAGCCGCCCAGCCCTAGC
TTGCACAGCAGGTGGGGAAGCGCGGATAACGTGGACGGGGCCTCGATTTT
TCGGGCCGGCAACAACTCCGCAGACTCCAAGACCCCCTGCGGCAGGAAAG
CGCCCAACGCATCCGCCGCCATCATCGCCGCTGCCGGGACCTTCGTCTAC
TCAAAGGCCTCCCGCCGCGCGACCGACAAGTTGGCCACCAACGTCATCGC
CACTAGCGCTGTTTCCGACGCTGACAGTTTCGCTGCGGAGGCATTGATCG
CCGACGCCAGGCTTGAAGCCTGGGGGCTCACCATGAGGAGAGCTGCCACC
TCCGCTGGAAACTGA
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protein sequence of Ec-28_001660.1

>Ec-28_001660.1 ID=Ec-28_001660.1|Name=Ec-28_001660.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=205bp
MWSAERQIDGLTARNAQLETHLACLEADVQTYHRVHDLLQTDLLCTIRDG
ETTLGKKDAEICSLTKDREIERLKAQLLHSKEVDGAQDIADRSTEPPSPS
LHSRWGSADNVDGASIFRAGNNSADSKTPCGRKAPNASAAIIAAAGTFVY
SKASRRATDKLATNVIATSAVSDADSFAAEALIADARLEAWGLTMRRAAT
SAGN*
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mRNA from alignment at chr_28:1451011..1453529-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_001660.1 ID=Ec-28_001660.1|Name=Ec-28_001660.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2519bp|location=Sequence derived from alignment at chr_28:1451011..1453529- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGGTCCGCCGAGCGACAGATCGACGGGCTGACGGCGAGGAATGCCCA
GCTCGAGACACACCTTGCTTGCTTGGAGGCGGACGTGAGTCAAAGCAATG
GTAGGGGGGGGGGGGTAACCCAGTACCTTTGACGTCTAGAGTTCTAGACG
TTTGCCATATGAGGGGTGCCCCGACGAGGCTACCATTTTTGATGCCATCC
TTCCGGAGTCGAAACGCAACAAGAAAGAGTTTTCATTGCCAAAACGCACT
GCTGTATCTACCCCACTAACACGACGCTGTTTCCGCTGCACCGCTGTCTC
GACGCTCGGCGACCTCAGGTCCAGACGTACCACCGAGTGCACGACCTGCT
GCAAACTGATCTCCTGTGCACGATCCGCGACGGCGAGACGACTCTGGGCA
AGAAGGATGCGGAGATATGCTCTCTGACCAAGGTGAATCATGCAATGAGT
TGCGACGGGATGCCAACAGAAGGGAACTTGCTGCTGATGTCATCGTGTGC
GAACGAGAATGCCCAGCAGGTTTCGCTGGTTGACTCTGTTGCAATGCTAC
CACCGCGACTTTCACGATGAGGCCGATGAGGTAGAAACCGTTCGACGCTA
GCTAGCTGTCTGTGTGCGATGGCATGTAGTGACACCACCACCTCCGTTTC
GGTTGTGTTGCTGCTCCGTAACGCCAACGACGCGAAGGACCGAGAGATCG
AACGCCTCAAGGCTCAGCTCCTCCACTCCAAGGAAGGTCAGTGCACGTGT
CAACGTATTGCCGAGGTGTAGTTCGTTAGTTGGGGGGACTCACTTGCTTT
GGGGAAGGGTTCCGACGAACGATCGATGTACGTACGTGTAGTTGGACATC
GCAACCCGAGCCGAAACGAAGACATGCGACGTGTTTTGTGCTTGTGGAGG
TGTGCTTATTGACTATTAGGTTGGTCAACGCCTTCATCGGACGGGCATGG
TCATGTGGAAGTTGTTGCAGCTCGTCCTCTACCAGCTCGTGTAGTGTATG
CTTCCTGGTCCTACGTTGACAATAGTTTCAGGAACCTGTGTCGAAACCTC
AACGAATCTGTTCATGTACCGTCAACGTTTCCGTGGAGAGTAGTACACTT
AGCCAATGTGCATGTTGTAAGACGGGTGTTCGGATGGATACGTCCCATGC
CAGCCTCTGTGTCTCACAACGCGCAGTCGTGCCGACAACAACGTTCTCTT
GTTTGCCCTCCATTTCCTATTTTTTTTGCAGTTGACGGCGCGCAGGACAT
CGCCGACCGCTCGACCGAGCCGCCCAGCCCTAGGTACGATACCAAATTGC
ATGACCGCTGCTCTGTAGACTTGCCAGCAAACGGTTTCGGCCGTTTTGAA
GTCCCCGTTGTCGGTATGAAGATTGATTGTGGATGTTTGACCGCTGTGGC
TACATTGTTTTCAGGATGCGTGTACAAGGGGTTTTGCTTTGAGCTCTTTT
TGCTCCAGAAGGTATCACTGATGACTGCATACAAGGTAGGTGCGTTCTGC
GATGCTTCGTTGACGGGTTGATGATTCGCTTGCTGCGATAGCTTACTTCG
CAAGACCATCCATTCGCAGTAGGATGGATTCTACGTTTGAGCATACTAGG
GGGGAAGACGGGGGCGAGGTACCGTATCATCTTCTTCCATCCCATAGTAT
CATCCGAAGAATGGAGCAGCAAGAGACCATCGGCCTACTTGTTTGTCCAC
CTGCTCCATGCTCACCCCCCCCCCCCGCCGCCGCGCCCGCCAACTCAAAC
AGCTTGCACAGCAGGTGGGGAAGCGCGGATAACGTGGACGGGGCCTCGAT
TTTTCGGGCCGGCAACAACTCCGCAGACTCCAAGACCCCCTGCGGCAGGA
AAGCGCCCAACGCATCCGCCGCCATCATCGCCGCTGCCGGGACCTTCGTC
TACTCAAAGGCCTCCCGCCGCGCGACCGACAAGTTGGCCACCAACGTCAT
CGCCACTAGCGCTGTTTCCGACGCTGACAGTTTCGCTGCGGAGGCATTGA
TCGCCGACGCCAGGCTTGAAGCCTGGGGGCTCACCATGAGGAGAGCTGCC
ACCTCCGCTGGGTGAGGGTGTGACACGTTGTTTTCCTGTCCCATGCTCTA
CCAGAAGAAGAGTGACTGACTCTCTTGTTGGTGTTGTACCTGTTGTGCGT
GTTGTTGGTGTTGTGCGTACTATGGAGTGTGGTGCTTGCAATAACATTGA
AAATGAGCTCGAGCTCTGGCTTTGCATTCTCCTTTCGATATGCTCGAAAG
TTGCACACGGAATAGGGGAAGAAGCAAAGCGTTTCTGGGTTTGAAAAGCT
AGCCAAACACGCGTCCGCTCATATTAGACGTGGGTCATTTTTCGTATGGT
AAGTAAATCACCCGAAATTGATGCTCCACCCGAACGGCATGTGACTCCAA
CGGAGCTCTCAGGCCACTGTCATTTTTCTGTGAAGCTCCGCGGGTAGCAG
AAGCTGTGCATCTTGCGTATCGTGTGTCCTCTTGCCCCATTCCCTCCCGC
CCGACACTGCAGAAACTGA
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Coding sequence (CDS) from alignment at chr_28:1451011..1453529-

>Ec-28_001660.1 ID=Ec-28_001660.1|Name=Ec-28_001660.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=615bp|location=Sequence derived from alignment at chr_28:1451011..1453529- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGGTCCGCCGAGCGACAGATCGACGGGCTGACGGCGAGGAATGCCCA
GCTCGAGACACACCTTGCTTGCTTGGAGGCGGACGTCCAGACGTACCACC
GAGTGCACGACCTGCTGCAAACTGATCTCCTGTGCACGATCCGCGACGGC
GAGACGACTCTGGGCAAGAAGGATGCGGAGATATGCTCTCTGACCAAGGA
CCGAGAGATCGAACGCCTCAAGGCTCAGCTCCTCCACTCCAAGGAAGTTG
ACGGCGCGCAGGACATCGCCGACCGCTCGACCGAGCCGCCCAGCCCTAGC
TTGCACAGCAGGTGGGGAAGCGCGGATAACGTGGACGGGGCCTCGATTTT
TCGGGCCGGCAACAACTCCGCAGACTCCAAGACCCCCTGCGGCAGGAAAG
CGCCCAACGCATCCGCCGCCATCATCGCCGCTGCCGGGACCTTCGTCTAC
TCAAAGGCCTCCCGCCGCGCGACCGACAAGTTGGCCACCAACGTCATCGC
CACTAGCGCTGTTTCCGACGCTGACAGTTTCGCTGCGGAGGCATTGATCG
CCGACGCCAGGCTTGAAGCCTGGGGGCTCACCATGAGGAGAGCTGCCACC
TCCGCTGGAAACTGA
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Synonyms
The feature 'Ec-28_001660.1' has the following synonyms
Synonym
Esi0033_0005
Esi_0033_0005