Ec-28_001480.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_001480.1
Unique NameEc-28_001480.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length53
Homology
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BLAST of Ec-28_001480.1 vs. uniprot
Match: D8LGW3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGW3_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.020e-29
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 MCTLVRMVEQRRKAHPLLGVDFRRCQGSPEGSPLASGRLKSGSMGRRWKKTS 156
            MCTLVRMVEQRRKAHPLLGVDFRRCQGSPEGSPLASGRLKSGSMGRRWKKTS
Sbjct:    1 MCTLVRMVEQRRKAHPLLGVDFRRCQGSPEGSPLASGRLKSGSMGRRWKKTS 52
The following BLAST results are available for this feature:
BLAST of Ec-28_001480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGW3_ECTSI1.020e-29100.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:1388773..1389318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length159
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-28_001480.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_001480Ec-28_001480Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 1388773..1389318 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001480.1.1Ec-28_001480.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1388773..1388895 +
Ec-28_001480.1.2Ec-28_001480.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1389283..1389318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001480.1CDS:Ec-28_001480.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 1388773..1388895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001480.1Ec-28_001480.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 1388773..1389318 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_001480.1 ID=Ec-28_001480.1|Name=Ec-28_001480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=53bp
MCTLVRMVEQRRKAHPLLGVDFRRCQGSPEGSPLASGRLKSGSMGRRWKK
TS*
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spliced messenger RNA

>Ec-28_001480.1 ID=Ec-28_001480.1|Name=Ec-28_001480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=159bp|location=Sequence derived from alignment at chr_28:1388773..1389318+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTACGCTGGTCAGGATGGTGGAGCAGCGGCGCAAGGCGCACCCCCT
CTTGGGGGTGGATTTCCGGCGATGCCAGGGGTCGCCGGAGGGGTCTCCAC
TGGCCAGCGGGAGACTGAAAAGCGGGAGTATGGGACGGCGTTGGAAGAAA
ACATCGTAA
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protein sequence of Ec-28_001480.1

>Ec-28_001480.1 ID=Ec-28_001480.1|Name=Ec-28_001480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=53bp
MCTLVRMVEQRRKAHPLLGVDFRRCQGSPEGSPLASGRLKSGSMGRRWKK
TS*
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mRNA from alignment at chr_28:1388773..1389318+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_001480.1 ID=Ec-28_001480.1|Name=Ec-28_001480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=546bp|location=Sequence derived from alignment at chr_28:1388773..1389318+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGTACGCTGGTCAGGATGGTGGAGCAGCGGCGCAAGGCGCACCCCCT
CTTGGGGGTGGATTTCCGGCGATGCCAGGGGTCGCCGGAGGGGTCTCCAC
TGGCCAGCGGGAGACTGAAAAGCGTGAGTCGAAGGATTGGGTAGCGAAAG
AAGGGATTCGGCGGTGGTTTGCCGCGGCTTTCGTTGCACAATCCGTCAAC
ATAGCGCGGCTGCAAGAAGAAGTGGGTGACGAGTTAGTCGTGAACGATGC
TGTGTTTAAGATGCTCAACAACCTGTCAGGCATCAAGCTCAAGCCATTTG
CTGCGCGCCATTACCAGATTGGTAGCGGCAAGGCGAAGGGTGTTCTCGTT
AACGACAAGTTTGCTGCGCTGGTGAAAGGCCTTCAAGGGATGGTGGCTCT
GGGGGTATCCGCGGTTGGGAAAGAGCGTGCGGAGTCTTTTTTGGCGCCAT
TCCGTGACATCTCACAGCGCTTGCACCACTACGTGTCTAAGTTCCGCTCT
GCCTTTTCAGGGGAGTATGGGACGGCGTTGGAAGAAAACATCGTAA
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Coding sequence (CDS) from alignment at chr_28:1388773..1389318+

>Ec-28_001480.1 ID=Ec-28_001480.1|Name=Ec-28_001480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=159bp|location=Sequence derived from alignment at chr_28:1388773..1389318+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGTACGCTGGTCAGGATGGTGGAGCAGCGGCGCAAGGCGCACCCCCT
CTTGGGGGTGGATTTCCGGCGATGCCAGGGGTCGCCGGAGGGGTCTCCAC
TGGCCAGCGGGAGACTGAAAAGCGGGAGTATGGGACGGCGTTGGAAGAAA
ACATCGTAA
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Synonyms
The feature 'Ec-28_001480.1' has the following synonyms
Synonym
Esi0181_0062
Esi_0181_0062