Ec-28_001090.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_001090.1
Unique NameEc-28_001090.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length113
Homology
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BLAST of Ec-28_001090.1 vs. uniprot
Match: A0A6H5KFI7_9PHAE (Aldose 1-epimerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.830e-19
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = -2 
Query:  365 YAVCLETQHFPAAVNHEGWVESVLLQPGGKYLERTRHVFTVQGRS 499
            YAVCLETQHFPAAVNHEGW+ESVLL+PG KYLERTRHVFTVQGRS
Sbjct:  345 YAVCLETQHFPAAVNHEGWMESVLLKPGEKYLERTRHVFTVQGRS 389
The following BLAST results are available for this feature:
BLAST of Ec-28_001090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFI7_9PHAE1.830e-1993.33Aldose 1-epimerase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:1056616..1057116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length501
Hectar predicted targeting categoryother localisation
Gene idEc-28_001090.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_001090Ec-28_001090Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 1056616..1057116 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001090.1.1Ec-28_001090.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1056616..1057116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001090.1CDS:Ec-28_001090.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 1056616..1056954 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0010905UTR:Ec-28_001090.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 1056955..1057116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001090.1Ec-28_001090.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 1056616..1056954 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_001090.1 ID=Ec-28_001090.1|Name=Ec-28_001090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=113bp
MRDPCMNSTVNAYALQALDISKRFYRSSGLIHPTYAIDDDKCANSLGLLV
DLRTLRRRCSKPALRRAYDLPCTVKTCLVLSRYFPPGCSRTDSTQPSWLT
AAGKCWVSKHTA*
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spliced messenger RNA

>Ec-28_001090.1 ID=Ec-28_001090.1|Name=Ec-28_001090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=501bp|location=Sequence derived from alignment at chr_28:1056616..1057116- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
AGCTGGAGAACCTGAGGCTTAACCAAAGTCACACCAAGCTGATGGCTTCA
ACCGGCAACAACCCAGGTTGAAGTACAAGCTCCCAATCTCGCGCGATCTG
CACCTTTCAAAGCGCTCGACTGAAGCTGGAGCAGGACTGATTTGATTACC
AATCGCGTGGCAATGCGGGACCCGTGCATGAACTCTACAGTCAACGCTTA
CGCTTTGCAGGCCCTTGACATTTCAAAACGCTTCTACAGAAGTAGTGGAC
TGATCCACCCCACGTACGCCATCGACGATGACAAATGTGCAAACAGCCTC
GGGCTGCTCGTAGATCTAAGAACGCTCCGCCGTCGATGTTCGAAGCCCGC
GCTTCGACGGGCCTACGATCTACCCTGCACAGTGAAGACGTGTCTAGTCC
TCTCCAGGTACTTTCCCCCGGGCTGCAGCAGGACCGATTCCACCCAACCC
TCGTGGTTGACCGCGGCGGGGAAGTGCTGGGTTTCCAAACACACGGCGTA
G
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protein sequence of Ec-28_001090.1

>Ec-28_001090.1 ID=Ec-28_001090.1|Name=Ec-28_001090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=113bp
MRDPCMNSTVNAYALQALDISKRFYRSSGLIHPTYAIDDDKCANSLGLLV
DLRTLRRRCSKPALRRAYDLPCTVKTCLVLSRYFPPGCSRTDSTQPSWLT
AAGKCWVSKHTA*
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mRNA from alignment at chr_28:1056616..1057116-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_001090.1 ID=Ec-28_001090.1|Name=Ec-28_001090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=501bp|location=Sequence derived from alignment at chr_28:1056616..1057116- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
AGCTGGAGAACCTGAGGCTTAACCAAAGTCACACCAAGCTGATGGCTTCA
ACCGGCAACAACCCAGGTTGAAGTACAAGCTCCCAATCTCGCGCGATCTG
CACCTTTCAAAGCGCTCGACTGAAGCTGGAGCAGGACTGATTTGATTACC
AATCGCGTGGCAATGCGGGACCCGTGCATGAACTCTACAGTCAACGCTTA
CGCTTTGCAGGCCCTTGACATTTCAAAACGCTTCTACAGAAGTAGTGGAC
TGATCCACCCCACGTACGCCATCGACGATGACAAATGTGCAAACAGCCTC
GGGCTGCTCGTAGATCTAAGAACGCTCCGCCGTCGATGTTCGAAGCCCGC
GCTTCGACGGGCCTACGATCTACCCTGCACAGTGAAGACGTGTCTAGTCC
TCTCCAGGTACTTTCCCCCGGGCTGCAGCAGGACCGATTCCACCCAACCC
TCGTGGTTGACCGCGGCGGGGAAGTGCTGGGTTTCCAAACACACGGCGTA
G
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Coding sequence (CDS) from alignment at chr_28:1056616..1057116-

>Ec-28_001090.1 ID=Ec-28_001090.1|Name=Ec-28_001090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=339bp|location=Sequence derived from alignment at chr_28:1056616..1057116- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGGGACCCGTGCATGAACTCTACAGTCAACGCTTACGCTTTGCAGGC
CCTTGACATTTCAAAACGCTTCTACAGAAGTAGTGGACTGATCCACCCCA
CGTACGCCATCGACGATGACAAATGTGCAAACAGCCTCGGGCTGCTCGTA
GATCTAAGAACGCTCCGCCGTCGATGTTCGAAGCCCGCGCTTCGACGGGC
CTACGATCTACCCTGCACAGTGAAGACGTGTCTAGTCCTCTCCAGGTACT
TTCCCCCGGGCTGCAGCAGGACCGATTCCACCCAACCCTCGTGGTTGACC
GCGGCGGGGAAGTGCTGGGTTTCCAAACACACGGCGTAG
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Synonyms
The feature 'Ec-28_001090.1' has the following synonyms
Synonym
Esi181_0088
Esi_181_0088