Ec-28_000560.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000560.2
Unique NameEc-28_000560.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length110
Homology
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BLAST of Ec-28_000560.2 vs. uniprot
Match: D7G9E0_ECTSI (PS II complex 12 kDa extrinsic protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9E0_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 8.310e-77
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 3 
Query:  153 ARTTTMSAESPASRGDFLKSAAGAAALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 539
            ARTTTMSAESPASRGDFLKSAAGAAALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR
Sbjct:   30 ARTTTMSAESPASRGDFLKSAAGAAALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 158
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BLAST of Ec-28_000560.2 vs. uniprot
Match: A0A836CCI8_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCI8_9STRA)

HSP 1 Score: 173 bits (439), Expect = 6.160e-49
Identity = 84/120 (70.00%), Postives = 106/120 (88.33%), Query Frame = 3 
Query:  183 PASRGDFLKSAAGAAAL-LGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 539
            P  R  FLKSAA AA + + +AAPALAE+DNPVVPFLGGGDK+D+NNANVRAYIK+ GMYP+ AGK+VSNGPY++V+++Y+IKGLS +EK+ +KK+ESRF+T++PQ MY IDRINNGLYR
Sbjct:   36 PVDRMAFLKSAATAAVVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAGKVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRINNGLYR 155
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BLAST of Ec-28_000560.2 vs. uniprot
Match: F0YKI8_AURAN (PS II complex 12 kDa extrinsic protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKI8_AURAN)

HSP 1 Score: 151 bits (382), Expect = 8.590e-41
Identity = 75/116 (64.66%), Postives = 90/116 (77.59%), Query Frame = 3 
Query:  192 RGDFLKSAAGAAALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 539
            R +FL   AGA     +AAPALA+ D   +P+LGG  KID+NNAN+R Y KL GMYP AAGKI SNGPY SVS++Y+IKGL + EKAAIKK+ESRFIT++P  MY IDR+NNGLYR
Sbjct:   22 RRNFLGKVAGAVTGASVAAPALADTDYAGLPYLGGSSKIDINNANIRVYAKLPGMYPGAAGKIASNGPYKSVSDVYNIKGLKDAEKAAIKKYESRFITLEPAPMYVIDRMNNGLYR 137
[Close]
BLAST of Ec-28_000560.2 vs. uniprot
Match: A0A6U4G1G5_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4G1G5_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.500e-37
Identity = 77/128 (60.16%), Postives = 96/128 (75.00%), Query Frame = 3 
Query:  159 TTTMSAESPASRGDFLKSAAGAAAL-LGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 539
            TT ++AE  A R +F   AAGAAA+    AAPA A VD   + +LGG   +D+NNANVR Y+K+ GMYP+AAGKIVSNGPY SVS++Y+I GL++ EK AIKK+ESRF+ + P A Y IDRINNGLYR
Sbjct:   25 TTALNAE--AGRREFFGKAAGAAAVAFAAAAPANAVVDYENIAYLGGSSTVDINNANVRVYLKMPGMYPAAAGKIVSNGPYKSVSDVYNIPGLTSAEKDAIKKYESRFVALKPSADYVIDRINNGLYR 150
[Close]
BLAST of Ec-28_000560.2 vs. uniprot
Match: A0A7S1XZL8_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZL8_9STRA)

HSP 1 Score: 142 bits (357), Expect = 6.270e-37
Identity = 70/102 (68.63%), Postives = 84/102 (82.35%), Query Frame = 3 
Query:  240 LAAP--ALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 539
            LAAP  A+A+VD   +P+LGG +KID+NNANVR Y KL GMYP+AA KI SNGPY SVS++YSIKGLS +EK+ IKK+ESR IT++P AMY IDR NNGLYR
Sbjct:   52 LAAPFAAMADVDYAGLPYLGGSEKIDINNANVRVYAKLPGMYPNAAAKITSNGPYKSVSDVYSIKGLSEKEKSVIKKYESRLITLEPSAMYVIDRTNNGLYR 153
[Close]
BLAST of Ec-28_000560.2 vs. uniprot
Match: A0A7S0CB11_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CB11_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.080e-35
Identity = 72/117 (61.54%), Postives = 87/117 (74.36%), Query Frame = 3 
Query:  189 SRGDFLKSAAGAAALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 539
            SR +FL +A  A A++  AAPA A  D   +  LGG + IDVNNANVR Y+KLQGMYP AAGKIVS+GPY SVS++Y I G+S+ EKA IK++E+RF T  P A Y IDRINNGLYR
Sbjct:   33 SRREFLSAATAAVAVVAAAAPANAIRDYENIALLGGSEIIDVNNANVRVYLKLQGMYPGAAGKIVSHGPYESVSDLYKIPGISDGEKAVIKRYEARFTTRPPSADYVIDRINNGLYR 149
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BLAST of Ec-28_000560.2 vs. uniprot
Match: A0A7S2TDD2_PROMC (PS II complex 12 kDa extrinsic protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TDD2_PROMC)

HSP 1 Score: 136 bits (343), Expect = 3.480e-35
Identity = 71/128 (55.47%), Postives = 93/128 (72.66%), Query Frame = 3 
Query:  159 TTTMSAESPASRGDFL-KSAAGAAALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 539
            TT+ +  + A R +F  K+AA  AA++G AAPA A +D   + +LGG   +D+NNANVRAY+K+ GMYP+ AGKIVSNGPY+SV +IYSIKGL++ E   +KK+E RF+   P   Y IDRINNGLYR
Sbjct:    4 TTSTALNAEAGRREFFSKAAAATAAVVGAAAPANAVIDYENIGYLGGSSIVDLNNANVRAYLKMPGMYPTVAGKIVSNGPYASVKDIYSIKGLTSAEADVLKKYEDRFVAKTPSPDYVIDRINNGLYR 131
[Close]
BLAST of Ec-28_000560.2 vs. uniprot
Match: A0A7S4RBC4_9STRA (PS II complex 12 kDa extrinsic protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBC4_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.060e-34
Identity = 72/128 (56.25%), Postives = 93/128 (72.66%), Query Frame = 3 
Query:  159 TTTMSAESPASRGDFLKSAAGAA-ALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 539
            +T ++AE  A R +F  +AA AA    G+AAPA A VD   + +LGG + +D+NNANVR Y+K+ GMYP+ AGKIVSNGPY+SV+++Y IKGL+  EK  +KK+ESRF T  P   Y IDRINNGLYR
Sbjct:   43 STALNAE--AGRREFFGTAAAAAIGAFGVAAPASAVVDYEALAYLGGSNVVDLNNANVRVYLKMPGMYPTVAGKIVSNGPYASVADVYKIKGLTEAEKGVLKKYESRFTTFSPSPDYVIDRINNGLYR 168
[Close]
BLAST of Ec-28_000560.2 vs. uniprot
Match: A0A7S2GXA3_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GXA3_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.200e-34
Identity = 74/128 (57.81%), Postives = 94/128 (73.44%), Query Frame = 3 
Query:  159 TTTMSAESPASRGDFLKSAAGAA-ALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 539
            +T ++AE  A R +F  SAA AA    G+AAPA A VD   + +LGG   +D+NNANVR Y+K+ GMYP+ AGKIVSNGPY+SVS++Y+IKGL++ EK  +KK+ESRF    P A Y IDRINNGLYR
Sbjct:   25 STALNAE--AGRREFFGSAAAAAIGAFGVAAPASAVVDYENIGYLGGSSIVDLNNANVRVYLKMPGMYPTVAGKIVSNGPYASVSDVYNIKGLTSGEKEILKKYESRFTAKAPSADYVIDRINNGLYR 150
[Close]
BLAST of Ec-28_000560.2 vs. uniprot
Match: K0TEZ3_THAOC (PS II complex 12 kDa extrinsic protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEZ3_THAOC)

HSP 1 Score: 134 bits (338), Expect = 3.180e-34
Identity = 75/129 (58.14%), Postives = 94/129 (72.87%), Query Frame = 3 
Query:  162 TTMSAESPASRGDFLKSAAGAAALLGLAA---PALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 539
            T ++AE+ A R  FL    GAAA  G AA    A A VD   V +LGGG  +DVNNANVRAY++L GMYPSAAGKIV++GPY SV+++Y+I GL++ EK  IKK+ES+F+  DP A Y IDR+NNGLYR
Sbjct:   26 TALNAEA-ADRRSFL----GAAAAFGAAAIPAAASARVDYENVAYLGGGSTVDVNNANVRAYLRLPGMYPSAAGKIVTHGPYKSVADVYNIPGLTSAEKEVIKKYESKFVAKDPAAEYVIDRVNNGLYR 149
The following BLAST results are available for this feature:
BLAST of Ec-28_000560.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9E0_ECTSI8.310e-77100.00PS II complex 12 kDa extrinsic protein n=2 Tax=Ect... [more]
A0A836CCI8_9STRA6.160e-4970.00PS II complex 12 kDa extrinsic protein n=1 Tax=Tri... [more]
F0YKI8_AURAN8.590e-4164.66PS II complex 12 kDa extrinsic protein n=1 Tax=Aur... [more]
A0A6U4G1G5_9STRA1.500e-3760.16PS II complex 12 kDa extrinsic protein n=1 Tax=Min... [more]
A0A7S1XZL8_9STRA6.270e-3768.63PS II complex 12 kDa extrinsic protein n=1 Tax=Pha... [more]
A0A7S0CB11_9STRA3.080e-3561.54PS II complex 12 kDa extrinsic protein n=1 Tax=Pro... [more]
A0A7S2TDD2_PROMC3.480e-3555.47PS II complex 12 kDa extrinsic protein n=1 Tax=Pro... [more]
A0A7S4RBC4_9STRA1.060e-3456.25PS II complex 12 kDa extrinsic protein n=3 Tax=Dit... [more]
A0A7S2GXA3_9STRA1.200e-3457.81PS II complex 12 kDa extrinsic protein n=1 Tax=Hel... [more]
K0TEZ3_THAOC3.180e-3458.14PS II complex 12 kDa extrinsic protein n=1 Tax=Tha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:564431..568821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1360
Hectar predicted targeting categoryother localisation
Gene idEc-28_000560.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000560Ec-28_000560Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 564427..568821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000560.2Ec-28_000560.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 565604..568102 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000560.2.1Ec-28_000560.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 564431..564583 +
Ec-28_000560.2.2Ec-28_000560.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 565446..565649 +
Ec-28_000560.2.3Ec-28_000560.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 567106..567188 +
Ec-28_000560.2.4Ec-28_000560.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 567902..568821 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0005605UTR:Ec-28_000560.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 564431..564583 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000560.2CDS:Ec-28_000560.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 565604..565649 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0005603UTR:Ec-28_000560.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 568103..568821 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000560.2 ID=Ec-28_000560.2|Name=Ec-28_000560.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=110bp
MSTTPTCARTSSSRACTPALRVRSYRTARTRLCRRSTASRDSPTRRRRRS
RSTRAGSSPWTPRPCTRSTASTTASTGKFSTLASGNRRSLFLEFFLRKTD
HDGTPLKAG*
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spliced messenger RNA

>Ec-28_000560.2 ID=Ec-28_000560.2|Name=Ec-28_000560.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1360bp|location=Sequence derived from alignment at chr_28:564431..568821+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
AGCCCATCTTCCAACTCACACCTATACCCTCTACGCATCTTTCCAGCACA
CCCAACACAACTACACAATGAAGTTCACTACTGTCGCAGTGCTGGCTTGC
GTGGGATCGGCCTCGGCCTTCGTGCCGCACGCGCTGCCCGCGGCACGCAT
GAGCGCCAGGACCACCACCATGTCGGCCGAGTCGCCCGCAAGCCGCGGGG
ACTTCCTCAAGTCGGCGGCGGGAGCGGCCGCGCTCTTGGGGCTCGCGGCG
CCGGCTTTGGCGGAGGTGGACAACCCGGTCGTGCCCTTCCTTGGCGGCGG
CGACAAGATCGATGTCAACAACGCCAACGTGCGCGCGTACATCAAGCTCC
AGGGCATGTACCCCAGCGCTGCGGGTAAGATCGTATCGAACGGCCCGTAC
TCGTCTGTGTCGGAGATCTACAGCATCAAGGGACTCTCCAACGAGGAGAA
GGCGGCGATCAAGAAGCACGAGAGCAGGTTCATCACCATGGACCCCCAGG
CCATGTACACGATCGACCGCATCAACAACGGCCTCTACCGGTAAATTTTC
CACCTTGGCCTCCGGCAACCGTCGGTCGCTTTTTCTGGAATTTTTCCTGA
GGAAAACGGACCACGACGGAACCCCCCTAAAAGCTGGGTGACGGACGGAA
GGCCCCACCGCTGTACCAGCCCCCACCCATGAACATTTGACGGCCGTTTG
CCGTGGATGATGCAAATCACCCGGCTTTCAATCGAGAGGATGTGATGCAA
GTGTATATGACGCGATCCGACTTCGACCGTTTCTCATGGGGAGGGGTGGC
GTTGTCGTGTGCCTGATTTTTGCGCCAGGGGGTTGGGGGGGGGGGGGTGT
TAGAGCGAGAGTTTTGGTCAAGGTTGTTTTTCTTGCTTTGAAATTGGCTC
TGAAGTCATGGAGCGTTCCTGACTGACGATTTGGGTTGCCGAGCTTGGTA
GAAGTCTGCACGCTGCCACAGCCCGTTCCCTTTCGGGGAAGCCGTTTCAA
ATTGTTTTTTTTTTTCTGTACCTGACAGGCGTGTGTGACACTTTTGTTGG
GGTTGAATTGAAGTCTTGGCGCACGCCGCGGAATAGAAAATGCTCTGTTG
ATGCTTGTTGCGGTATTTCGCTGGTGTTCGTTAGATCTGTTGGTTTTAGC
CCTTCGTGTAACGAGATCGGCAGCGCAGCACGCGTTGCTGTCCCTTTAAA
GAATGAAGCGAATCGTCGCGACTTTGTCAACATGCACACCTACATGGAGG
CGTCCACACGGTGCCTGGTCCGGTATTCCGACGGACCTGCCGTGTCTTGT
TTCTGTTCTGACGTGTTTTCTCCCAAGCACACACTCCTGTTGACCTCAAC
GGGTCAATCC
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protein sequence of Ec-28_000560.2

>Ec-28_000560.2 ID=Ec-28_000560.2|Name=Ec-28_000560.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=110bp
MSTTPTCARTSSSRACTPALRVRSYRTARTRLCRRSTASRDSPTRRRRRS
RSTRAGSSPWTPRPCTRSTASTTASTGKFSTLASGNRRSLFLEFFLRKTD
HDGTPLKAG*
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mRNA from alignment at chr_28:564431..568821+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000560.2 ID=Ec-28_000560.2|Name=Ec-28_000560.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4391bp|location=Sequence derived from alignment at chr_28:564431..568821+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
AGCCCATCTTCCAACTCACACCTATACCCTCTACGCATCTTTCCAGCACA
CCCAACACAACTACACAATGAAGTTCACTACTGTCGCAGTGCTGGCTTGC
GTGGGATCGGCCTCGGCCTTCGTGCCGCACGCGCTGCCCGCGGCACGCAT
GAGGTGAGGACAGGAGAGGGCACACACAGGAAGCACCCAACACCTGTCTT
GGGTCGCAGAAGAGGCTGGTTGTCGTGTTTGAGATAAGAGAGAGAGGCAG
GCAGGCAGGCAGGGCGGCAAACGGGAGAGCTTTAGGGTTGGCCGGAGGGT
GCCGTAGCCCTTCCTGCTGCCAAGGGTTTTGGCATGGTGCAACTCTACAT
CGGTCTGCATGTGCCGCCAAATTTGATGCGCCTCATTTTGTTGAAAACAC
AGACGCATGAGGTTGTCGGATTGCCTGCGACAACCGCCACGGGGTGGTGC
TGGCCCAGCGCTGTCGCATTGACTACAGCAGTAGTAGGCCAGTCACGGAG
TTGTAGGTTGTTTTCCTTTGCCCCCATGGTGGACACGGTCCACGTGCTTC
TCGATTGCTGGAGGAAAACGGTCGTTTGTGTTGGTCAGCGACTCGCGGAT
GATGATCGCTGGAGTGGGGAAGCGAGGTGTTGCACCGGGAGGTCATGCGG
CCTCTCCCTGAAGGGGGGTTAGTCAGCTTTGCTCGAGGTGCCCAAGCGAC
GCCTGTACTTGCCGAATCCACGCACGGGGCAGCAGCTTTGCATTGGCATG
TTTGCTGCCCAGGGAACGTGTTCGTGTTCTCATGTTCTTTGGCGCTCGGC
CTCGCTAGAAAGCGTGTGTGCTCTTTTTATGTGTGATGTGCCACCTCCCC
TCCAAAAGTTCGATACACTTGCCAATGTTAAATTTCGGTCCGTGATCTCT
CCATCATGCTCGGCTCTCTTGCTGAGTGTTCTCTTCCCCCCCCCCCGCCC
CCACCCCATGTTCGGCATCCTGAATGTGACGCAAAACACGGCTGTCTTCG
TCTTCGGCCGTGCAGCGCCAGGACCACCACCATGTCGGCCGAGTCGCCCG
CAAGCCGCGGGGACTTCCTCAAGTCGGCGGCGGGAGCGGCCGCGCTCTTG
GGGCTCGCGGCGCCGGCTTTGGCGGAGGTGGACAACCCGGTCGTGCCCTT
CCTTGGCGGCGGCGACAAGATCGATGTCAACAACGCCAACGTGCGCGCGT
ACATCAAGCTCCAGGGCATGTAAGTTTGCTGCTTGTCCAGGTCAATGTTG
TCTCATGCATGGACCATTTGGCCCCGATACAGCAGCACCAGTATGTCCAC
TGCATGCAAGGTGTGTTCATGGTCCCGCGGTTGCCTAGACATCGAGTGGT
ATCAAATGTTTTTGAGGTTTGGAGGTGCGTGTGCGCTCTTGCTAAGCTGT
AGTTCATGTTCTGCGGGTGGTCGCTGCGTCATTCGACACTGCTTAATCGT
TTGGAACGGTTGCTGCCTATCAACATGAAGTGGAATACACATGAGCAAAC
TTAGCATCATACCGGCACTGTGTAATTTTTTGGTTGATGGAAGCATATGC
ACACAGGAGGAAAGTGGGCTGCTACGCTGCTACTGCTGTCTTGGTTCAAC
TTGCGTGGATGTTCATTTCAGTATACACCGCGTTGTCCTTGACACCTGTC
TGGGAGCATTAGATAGTAGTGATGCACATGCCGTGCTTCAACATCCAGCG
CACTGGCGAACCGGTTTGCTTGCCACAAGCGAGATCCGCGAAACAGCAGC
AGCATCGTAATGGGTCTCTCCTCGTGAGCCTGTTGAGGCCTGGTACTATT
TAGCTATTTAGCAAATTGGGTCTTTCGTATGTGCTCCCATCAAGTCCTTC
CACACAACCACTAAGCACCGAACTTGACTGATGCGAAAGCTTGTGAGGTT
CGGAAGGCGTCAACATTTGCCCCCTCCTCTCTCATGCGTTGTATGCTTAG
CCGCATGAAGACGTAATGATCGGCTTGGCTGCGTCCAGAACGCCGCACGC
TGATAATTGATAAGTGTACGCGGCGGCGCCAATTTTTTTGAGGCGTTTTT
ATCTGTGTGGTCTTGTGTTTTTTTTTTTGCAGATGGGTGTAGGTCGTTGA
ACTGGTGTACACAGCCCCAGCAAGCACAGCGTGCACAAGGGCATGTACAA
GTCCAAACAGACGTCGCCCGCACCTCACTTGAAGAACGGGACGGAGCAGC
GTTCCCCCATTGATAGCGCGTACCATAATGCGTGGAAACAGAGTGAAGGG
ATGACTCTTTACCCCCATCCCATAACCGAACATGGCGTGGGAAGCAAACG
GCTGTTTTGCTTTCGACGTGCGTGCGGGGTCCCGTGTCTTTGTGACGCGG
TCTGCAAGCCTCGTTTTTTAACCATCGGAGGTCCCGAGACTAGAGTTGCA
TCGAGTTTCTACTGTCCTCAGCTTGAAAACTGCAGGTTGACCATGTCCCC
AACTTGTTGTTTTGCTTCGGTGGGAGATATCTATTGATGGTAGAATTGAA
AAGCAAAGTAAGAGAACAAGGTGGGACGACAAAACCCGAAAACAAATCCG
TCTTACAATAGGTGGTACTAGACGGCGGGCAGCTGCTTGTTGTGGCCGCG
CCGTTGTTTTTTCTTATGTTTTGACCATTACTGTTTTTAGTTCTCTTGCG
TGTTGTGTCTACTATCGATCCACAGGTACCCCAGCGCTGCGGGTAAGATC
GTATCGAACGGCCCGTACTCGTCTGTGTCGGAGATCTACAGCATCAAGGG
ACTCTCCAGTGAGTACTGTTGCTGTTGCGGCGGATCAGTCAGCGGGAAGA
GCGCAACTGCTGTGTGCTGTTTTGTTTGGCAGCGTGTTCCGTAGAGAGTG
TACATCGCTTTGCTTGCGTGAAGCTATAATAACGAGGGAACTCGCGGTAT
CTTGGGCTGTGTTCAACTGTACTTACCGAGGACGGGTCAGAGCATGACAT
GTGTGACGGCTACTCGTTTTGTGACGCCTCGTCTGCTTGACGAGTCGATA
ACTCATACGCTTTCTGGTCTGATTTCTTGCAATTTAAAAGTTGCACACCT
ACAGCAAATGCGGGAATCGGCGGGTGAGACAGGTCGCAATTCGCCGGTTT
GCTGATCGTGTAGCACATTTTTGAGTAGCGGGAACTCAGTTGTTTCTTCT
ATTTTTGGTTTGCAGGGGTTGCAAAGAGTGGAGTATTGACACCTAAACGA
TATCTCTGGTGCCTCATCAGAAGTCCTCATTATATGAGTTCACTACAGTA
CACCGCCAGCTTTTGTGGCTGGAGTAAAGCACTTTGTTGGTATTGAGCCG
AGAACTGTTCTGGTTGTCACCCACTTCTGTCGCTCCCTACAGCATCATGG
TCTCACCAAGTGGTTCCGCGTCGGCGTCAAATGTAGTTTGTCCGCACGTA
CGAAACCATGACAGCATGTAACTTTGTTCCTTACGTGTACGTATCTCTCT
CTGTCTTTCTCGCCAACGCAGACGAGGAGAAGGCGGCGATCAAGAAGCAC
GAGAGCAGGTTCATCACCATGGACCCCCAGGCCATGTACACGATCGACCG
CATCAACAACGGCCTCTACCGGTAAATTTTCCACCTTGGCCTCCGGCAAC
CGTCGGTCGCTTTTTCTGGAATTTTTCCTGAGGAAAACGGACCACGACGG
AACCCCCCTAAAAGCTGGGTGACGGACGGAAGGCCCCACCGCTGTACCAG
CCCCCACCCATGAACATTTGACGGCCGTTTGCCGTGGATGATGCAAATCA
CCCGGCTTTCAATCGAGAGGATGTGATGCAAGTGTATATGACGCGATCCG
ACTTCGACCGTTTCTCATGGGGAGGGGTGGCGTTGTCGTGTGCCTGATTT
TTGCGCCAGGGGGTTGGGGGGGGGGGGGTGTTAGAGCGAGAGTTTTGGTC
AAGGTTGTTTTTCTTGCTTTGAAATTGGCTCTGAAGTCATGGAGCGTTCC
TGACTGACGATTTGGGTTGCCGAGCTTGGTAGAAGTCTGCACGCTGCCAC
AGCCCGTTCCCTTTCGGGGAAGCCGTTTCAAATTGTTTTTTTTTTTCTGT
ACCTGACAGGCGTGTGTGACACTTTTGTTGGGGTTGAATTGAAGTCTTGG
CGCACGCCGCGGAATAGAAAATGCTCTGTTGATGCTTGTTGCGGTATTTC
GCTGGTGTTCGTTAGATCTGTTGGTTTTAGCCCTTCGTGTAACGAGATCG
GCAGCGCAGCACGCGTTGCTGTCCCTTTAAAGAATGAAGCGAATCGTCGC
GACTTTGTCAACATGCACACCTACATGGAGGCGTCCACACGGTGCCTGGT
CCGGTATTCCGACGGACCTGCCGTGTCTTGTTTCTGTTCTGACGTGTTTT
CTCCCAAGCACACACTCCTGTTGACCTCAACGGGTCAATCC
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Coding sequence (CDS) from alignment at chr_28:564431..568821+

>Ec-28_000560.2 ID=Ec-28_000560.2|Name=Ec-28_000560.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=330bp|location=Sequence derived from alignment at chr_28:564431..568821+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCAACAACGCCAACGTGCGCGCGTACATCAAGCTCCAGGGCATGTAC
CCCAGCGCTGCGGGTAAGATCGTATCGAACGGCCCGTACTCGTCTGTGTC
GGAGATCTACAGCATCAAGGGACTCTCCAACGAGGAGAAGGCGGCGATCA
AGAAGCACGAGAGCAGGTTCATCACCATGGACCCCCAGGCCATGTACACG
ATCGACCGCATCAACAACGGCCTCTACCGGTAAATTTTCCACCTTGGCCT
CCGGCAACCGTCGGTCGCTTTTTCTGGAATTTTTCCTGAGGAAAACGGAC
CACGACGGAACCCCCCTAAAAGCTGGGTGA
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Synonyms
The feature 'Ec-28_000560.2' has the following synonyms
Synonym
Esi0098_0012
Esi_0098_0012
PSB