Ec-28_000560.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000560.1
Unique NameEc-28_000560.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length159
Homology
[Close]
BLAST of Ec-28_000560.1 vs. uniprot
Match: D7G9E0_ECTSI (PS II complex 12 kDa extrinsic protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9E0_ECTSI)

HSP 1 Score: 297 bits (761), Expect = 1.130e-97
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 2 
Query:   71 MKFTTVAVLACVGSASAFVPHALPAARMSARTTTMSAESPASRGDFLKSAAGAAALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 544
            MKFTTVAVLACVGSASAFVPHALPAARMSARTTTMSAESPASRGDFLKSAAGAAALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR
Sbjct:    1 MKFTTVAVLACVGSASAFVPHALPAARMSARTTTMSAESPASRGDFLKSAAGAAALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 158
[Close]
BLAST of Ec-28_000560.1 vs. uniprot
Match: A0A836CCI8_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCI8_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.950e-52
Identity = 98/159 (61.64%), Postives = 126/159 (79.25%), Query Frame = 2 
Query:   71 MKFTTVAVLACVGSASAFVPHALPAARMSARTTTMSAESPASRGDFLKSAAGAAAL-LGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 544
            MK T   VLA    A AFV    P+A + +   +M+A+ P  R  FLKSAA AA + + +AAPALAE+DNPVVPFLGGGDK+D+NNANVRAYIK+ GMYP+ AGK+VSNGPY++V+++Y+IKGLS +EK+ +KK+ESRF+T++PQ MY IDRINNGLYR
Sbjct:    1 MKVTGAIVLAAACGAQAFVA---PSAGVRSTQLSMTAQ-PVDRMAFLKSAATAAVVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAGKVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRINNGLYR 155
[Close]
BLAST of Ec-28_000560.1 vs. uniprot
Match: F0YKI8_AURAN (PS II complex 12 kDa extrinsic protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKI8_AURAN)

HSP 1 Score: 151 bits (382), Expect = 4.040e-41
Identity = 75/116 (64.66%), Postives = 90/116 (77.59%), Query Frame = 2 
Query:  197 RGDFLKSAAGAAALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 544
            R +FL   AGA     +AAPALA+ D   +P+LGG  KID+NNAN+R Y KL GMYP AAGKI SNGPY SVS++Y+IKGL + EKAAIKK+ESRFIT++P  MY IDR+NNGLYR
Sbjct:   22 RRNFLGKVAGAVTGASVAAPALADTDYAGLPYLGGSSKIDINNANIRVYAKLPGMYPGAAGKIASNGPYKSVSDVYNIKGLKDAEKAAIKKYESRFITLEPAPMYVIDRMNNGLYR 137
[Close]
BLAST of Ec-28_000560.1 vs. uniprot
Match: A0A6U4G1G5_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4G1G5_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.190e-40
Identity = 85/154 (55.19%), Postives = 111/154 (72.08%), Query Frame = 2 
Query:   86 VAVLACVGSASAFVPHALPAARMSARTTTMSAESPASRGDFLKSAAGAAAL-LGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 544
            +++LA V +A+AFVP      +   +TT ++AE  A R +F   AAGAAA+    AAPA A VD   + +LGG   +D+NNANVR Y+K+ GMYP+AAGKIVSNGPY SVS++Y+I GL++ EK AIKK+ESRF+ + P A Y IDRINNGLYR
Sbjct:    4 LSLLATVATAAAFVPQ-----QAGPQTTALNAE--AGRREFFGKAAGAAAVAFAAAAPANAVVDYENIAYLGGSSTVDINNANVRVYLKMPGMYPAAAGKIVSNGPYKSVSDVYNIPGLTSAEKDAIKKYESRFVALKPSADYVIDRINNGLYR 150
[Close]
BLAST of Ec-28_000560.1 vs. uniprot
Match: K0TEZ3_THAOC (PS II complex 12 kDa extrinsic protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEZ3_THAOC)

HSP 1 Score: 145 bits (365), Expect = 1.850e-38
Identity = 87/161 (54.04%), Postives = 112/161 (69.57%), Query Frame = 2 
Query:   71 MKFTTVAVLACVGSASAFVPHALPAARMSARTTTMSAESPASRGDFLKSAAGAAALLGLAA---PALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 544
            MK   +A L  + +A+AF P+A PAA+     T ++AE+ A R  FL    GAAA  G AA    A A VD   V +LGGG  +DVNNANVRAY++L GMYPSAAGKIV++GPY SV+++Y+I GL++ EK  IKK+ES+F+  DP A Y IDR+NNGLYR
Sbjct:    1 MKTAIIATL--ISTAAAFAPNAQPAAQ-----TALNAEA-ADRRSFL----GAAAAFGAAAIPAAASARVDYENVAYLGGGSTVDVNNANVRAYLRLPGMYPSAAGKIVTHGPYKSVADVYNIPGLTSAEKEVIKKYESKFVAKDPAAEYVIDRVNNGLYR 149
[Close]
BLAST of Ec-28_000560.1 vs. uniprot
Match: A0A7S1XZL8_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZL8_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.120e-37
Identity = 70/102 (68.63%), Postives = 84/102 (82.35%), Query Frame = 2 
Query:  245 LAAP--ALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 544
            LAAP  A+A+VD   +P+LGG +KID+NNANVR Y KL GMYP+AA KI SNGPY SVS++YSIKGLS +EK+ IKK+ESR IT++P AMY IDR NNGLYR
Sbjct:   52 LAAPFAAMADVDYAGLPYLGGSEKIDINNANVRVYAKLPGMYPNAAAKITSNGPYKSVSDVYSIKGLSEKEKSVIKKYESRLITLEPSAMYVIDRTNNGLYR 153
[Close]
BLAST of Ec-28_000560.1 vs. uniprot
Match: A0A7S1Z9N8_TRICV (PS II complex 12 kDa extrinsic protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z9N8_TRICV)

HSP 1 Score: 140 bits (353), Expect = 1.100e-36
Identity = 86/156 (55.13%), Postives = 111/156 (71.15%), Query Frame = 2 
Query:   86 VAVLACVGS-ASAFVPHALPAARMSARTTTMSAESPASRGDFLKSA--AGAAALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 544
            +AVLA V + A+AF P+  PA+     +T ++AE  ASR DFL  A  AG AA+ G AAPA A  D   + FLGG   +D+NNANVR Y+K+ GMYP+AAGKIV+NGPY +VS+IYSI GL+  EK  +KK+ESRF+ + P A + IDR+NNGLYR
Sbjct:    3 LAVLASVVAVAAAFAPNQAPAS-----STALNAE--ASRKDFLAGAMAAGVAAVAG-AAPANAVRDYENIGFLGGSSTVDINNANVRVYLKMPGMYPAAAGKIVTNGPYKAVSDIYSIPGLTAGEKEVMKKYESRFVALPPSADFVIDRVNNGLYR 150
[Close]
BLAST of Ec-28_000560.1 vs. uniprot
Match: A0A7S4UVQ5_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UVQ5_9STRA)

HSP 1 Score: 139 bits (349), Expect = 4.780e-36
Identity = 90/162 (55.56%), Postives = 109/162 (67.28%), Query Frame = 2 
Query:   68 TMKFTTVAVLACVGSASAFVPHALPAARMSARTTTMSAESPASRGDFLKSAAGAAALLGLAA---PALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 544
            TMK   ++ L  V SA+AF P+A PAA+     T ++AE  A R  FL    GAAA  G AA    A A+VD   V  LGGG  ID+NNANVRAY++LQGMYP AAGKIV++GPY SVS++Y+I GL++ EK  IKK+ESRF    P   Y IDRINNGLYR
Sbjct:    6 TMKLAIISAL--VASAAAFAPNAQPAAQ-----TALNAE--ADRRAFL----GAAAAFGAAAIPMAANAKVDYESVGQLGGGSIIDLNNANVRAYLRLQGMYPGAAGKIVTHGPYKSVSDVYNIPGLTSAEKEVIKKYESRFSVNAPAPEYVIDRINNGLYR 154
[Close]
BLAST of Ec-28_000560.1 vs. uniprot
Match: A0A7S2GXA3_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GXA3_9STRA)

HSP 1 Score: 138 bits (347), Expect = 8.310e-36
Identity = 82/154 (53.25%), Postives = 108/154 (70.13%), Query Frame = 2 
Query:   86 VAVLACVGSASAFVPHALPAARMSARTTTMSAESPASRGDFLKSAAGAA-ALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 544
            +A+LA + SA+A    A  A +   ++T ++AE  A R +F  SAA AA    G+AAPA A VD   + +LGG   +D+NNANVR Y+K+ GMYP+ AGKIVSNGPY+SVS++Y+IKGL++ EK  +KK+ESRF    P A Y IDRINNGLYR
Sbjct:    3 LAILAALVSAAA----AFTAPQTVQQSTALNAE--AGRREFFGSAAAAAIGAFGVAAPASAVVDYENIGYLGGSSIVDLNNANVRVYLKMPGMYPTVAGKIVSNGPYASVSDVYNIKGLTSGEKEILKKYESRFTAKAPSADYVIDRINNGLYR 150
[Close]
BLAST of Ec-28_000560.1 vs. uniprot
Match: A0A7S0CB11_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CB11_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.580e-35
Identity = 72/117 (61.54%), Postives = 87/117 (74.36%), Query Frame = 2 
Query:  194 SRGDFLKSAAGAAALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 544
            SR +FL +A  A A++  AAPA A  D   +  LGG + IDVNNANVR Y+KLQGMYP AAGKIVS+GPY SVS++Y I G+S+ EKA IK++E+RF T  P A Y IDRINNGLYR
Sbjct:   33 SRREFLSAATAAVAVVAAAAPANAIRDYENIALLGGSEIIDVNNANVRVYLKLQGMYPGAAGKIVSHGPYESVSDLYKIPGISDGEKAVIKRYEARFTTRPPSADYVIDRINNGLYR 149
The following BLAST results are available for this feature:
BLAST of Ec-28_000560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9E0_ECTSI1.130e-97100.00PS II complex 12 kDa extrinsic protein n=2 Tax=Ect... [more]
A0A836CCI8_9STRA1.950e-5261.64PS II complex 12 kDa extrinsic protein n=1 Tax=Tri... [more]
F0YKI8_AURAN4.040e-4164.66PS II complex 12 kDa extrinsic protein n=1 Tax=Aur... [more]
A0A6U4G1G5_9STRA1.190e-4055.19PS II complex 12 kDa extrinsic protein n=1 Tax=Min... [more]
K0TEZ3_THAOC1.850e-3854.04PS II complex 12 kDa extrinsic protein n=1 Tax=Tha... [more]
A0A7S1XZL8_9STRA3.120e-3768.63PS II complex 12 kDa extrinsic protein n=1 Tax=Pha... [more]
A0A7S1Z9N8_TRICV1.100e-3655.13PS II complex 12 kDa extrinsic protein n=1 Tax=Tri... [more]
A0A7S4UVQ5_9STRA4.780e-3655.56PS II complex 12 kDa extrinsic protein n=1 Tax=Dit... [more]
A0A7S2GXA3_9STRA8.310e-3653.25PS II complex 12 kDa extrinsic protein n=1 Tax=Hel... [more]
A0A7S0CB11_9STRA1.580e-3561.54PS II complex 12 kDa extrinsic protein n=1 Tax=Pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:564427..568702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue5.6e-35
Seed eggNOG ortholog44056.XP_009040947.1
Length1245
KEGG koko:K02719
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categorychloroplast
Gene idEc-28_000560.1
EggNOG free text desc.Photosystem II 12 kDa extrinsic protein (PsbU)
EggNOG OGs2D3K6@1,2S50I@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000560Ec-28_000560Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 564427..568821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000560.1Ec-28_000560.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 564498..568005 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000560.1.1Ec-28_000560.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 564427..564583 +
Ec-28_000560.1.2Ec-28_000560.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 565446..565649 +
Ec-28_000560.1.3Ec-28_000560.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 567106..567188 +
Ec-28_000560.1.4Ec-28_000560.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 567902..568702 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0005605UTR:Ec-28_000560.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 564427..564497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000560.1CDS:Ec-28_000560.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 564498..564583 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0005603UTR:Ec-28_000560.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 568006..568702 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000560.1 ID=Ec-28_000560.1|Name=Ec-28_000560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=159bp
MKFTTVAVLACVGSASAFVPHALPAARMSARTTTMSAESPASRGDFLKSA
AGAAALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPS
AAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTID
RINNGLYR*
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spliced messenger RNA

>Ec-28_000560.1 ID=Ec-28_000560.1|Name=Ec-28_000560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1245bp|location=Sequence derived from alignment at chr_28:564427..568702+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TCCTAGCCCATCTTCCAACTCACACCTATACCCTCTACGCATCTTTCCAG
CACACCCAACACAACTACACAATGAAGTTCACTACTGTCGCAGTGCTGGC
TTGCGTGGGATCGGCCTCGGCCTTCGTGCCGCACGCGCTGCCCGCGGCAC
GCATGAGCGCCAGGACCACCACCATGTCGGCCGAGTCGCCCGCAAGCCGC
GGGGACTTCCTCAAGTCGGCGGCGGGAGCGGCCGCGCTCTTGGGGCTCGC
GGCGCCGGCTTTGGCGGAGGTGGACAACCCGGTCGTGCCCTTCCTTGGCG
GCGGCGACAAGATCGATGTCAACAACGCCAACGTGCGCGCGTACATCAAG
CTCCAGGGCATGTACCCCAGCGCTGCGGGTAAGATCGTATCGAACGGCCC
GTACTCGTCTGTGTCGGAGATCTACAGCATCAAGGGACTCTCCAACGAGG
AGAAGGCGGCGATCAAGAAGCACGAGAGCAGGTTCATCACCATGGACCCC
CAGGCCATGTACACGATCGACCGCATCAACAACGGCCTCTACCGGTAAAT
TTTCCACCTTGGCCTCCGGCAACCGTCGGTCGCTTTTTCTGGAATTTTTC
CTGAGGAAAACGGACCACGACGGAACCCCCCTAAAAGCTGGGTGACGGAC
GGAAGGCCCCACCGCTGTACCAGCCCCCACCCATGAACATTTGACGGCCG
TTTGCCGTGGATGATGCAAATCACCCGGCTTTCAATCGAGAGGATGTGAT
GCAAGTGTATATGACGCGATCCGACTTCGACCGTTTCTCATGGGGAGGGG
TGGCGTTGTCGTGTGCCTGATTTTTGCGCCAGGGGGTTGGGGGGGGGGGG
GTGTTAGAGCGAGAGTTTTGGTCAAGGTTGTTTTTCTTGCTTTGAAATTG
GCTCTGAAGTCATGGAGCGTTCCTGACTGACGATTTGGGTTGCCGAGCTT
GGTAGAAGTCTGCACGCTGCCACAGCCCGTTCCCTTTCGGGGAAGCCGTT
TCAAATTGTTTTTTTTTTTCTGTACCTGACAGGCGTGTGTGACACTTTTG
TTGGGGTTGAATTGAAGTCTTGGCGCACGCCGCGGAATAGAAAATGCTCT
GTTGATGCTTGTTGCGGTATTTCGCTGGTGTTCGTTAGATCTGTTGGTTT
TAGCCCTTCGTGTAACGAGATCGGCAGCGCAGCACGCGTTGCTGTCCCTT
TAAAGAATGAAGCGAATCGTCGCGACTTTGTCAACATGCACACCT
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protein sequence of Ec-28_000560.1

>Ec-28_000560.1 ID=Ec-28_000560.1|Name=Ec-28_000560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=159bp
MKFTTVAVLACVGSASAFVPHALPAARMSARTTTMSAESPASRGDFLKSA
AGAAALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPS
AAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTID
RINNGLYR*
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mRNA from alignment at chr_28:564427..568702+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000560.1 ID=Ec-28_000560.1|Name=Ec-28_000560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4276bp|location=Sequence derived from alignment at chr_28:564427..568702+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TCCTAGCCCATCTTCCAACTCACACCTATACCCTCTACGCATCTTTCCAG
CACACCCAACACAACTACACAATGAAGTTCACTACTGTCGCAGTGCTGGC
TTGCGTGGGATCGGCCTCGGCCTTCGTGCCGCACGCGCTGCCCGCGGCAC
GCATGAGGTGAGGACAGGAGAGGGCACACACAGGAAGCACCCAACACCTG
TCTTGGGTCGCAGAAGAGGCTGGTTGTCGTGTTTGAGATAAGAGAGAGAG
GCAGGCAGGCAGGCAGGGCGGCAAACGGGAGAGCTTTAGGGTTGGCCGGA
GGGTGCCGTAGCCCTTCCTGCTGCCAAGGGTTTTGGCATGGTGCAACTCT
ACATCGGTCTGCATGTGCCGCCAAATTTGATGCGCCTCATTTTGTTGAAA
ACACAGACGCATGAGGTTGTCGGATTGCCTGCGACAACCGCCACGGGGTG
GTGCTGGCCCAGCGCTGTCGCATTGACTACAGCAGTAGTAGGCCAGTCAC
GGAGTTGTAGGTTGTTTTCCTTTGCCCCCATGGTGGACACGGTCCACGTG
CTTCTCGATTGCTGGAGGAAAACGGTCGTTTGTGTTGGTCAGCGACTCGC
GGATGATGATCGCTGGAGTGGGGAAGCGAGGTGTTGCACCGGGAGGTCAT
GCGGCCTCTCCCTGAAGGGGGGTTAGTCAGCTTTGCTCGAGGTGCCCAAG
CGACGCCTGTACTTGCCGAATCCACGCACGGGGCAGCAGCTTTGCATTGG
CATGTTTGCTGCCCAGGGAACGTGTTCGTGTTCTCATGTTCTTTGGCGCT
CGGCCTCGCTAGAAAGCGTGTGTGCTCTTTTTATGTGTGATGTGCCACCT
CCCCTCCAAAAGTTCGATACACTTGCCAATGTTAAATTTCGGTCCGTGAT
CTCTCCATCATGCTCGGCTCTCTTGCTGAGTGTTCTCTTCCCCCCCCCCC
GCCCCCACCCCATGTTCGGCATCCTGAATGTGACGCAAAACACGGCTGTC
TTCGTCTTCGGCCGTGCAGCGCCAGGACCACCACCATGTCGGCCGAGTCG
CCCGCAAGCCGCGGGGACTTCCTCAAGTCGGCGGCGGGAGCGGCCGCGCT
CTTGGGGCTCGCGGCGCCGGCTTTGGCGGAGGTGGACAACCCGGTCGTGC
CCTTCCTTGGCGGCGGCGACAAGATCGATGTCAACAACGCCAACGTGCGC
GCGTACATCAAGCTCCAGGGCATGTAAGTTTGCTGCTTGTCCAGGTCAAT
GTTGTCTCATGCATGGACCATTTGGCCCCGATACAGCAGCACCAGTATGT
CCACTGCATGCAAGGTGTGTTCATGGTCCCGCGGTTGCCTAGACATCGAG
TGGTATCAAATGTTTTTGAGGTTTGGAGGTGCGTGTGCGCTCTTGCTAAG
CTGTAGTTCATGTTCTGCGGGTGGTCGCTGCGTCATTCGACACTGCTTAA
TCGTTTGGAACGGTTGCTGCCTATCAACATGAAGTGGAATACACATGAGC
AAACTTAGCATCATACCGGCACTGTGTAATTTTTTGGTTGATGGAAGCAT
ATGCACACAGGAGGAAAGTGGGCTGCTACGCTGCTACTGCTGTCTTGGTT
CAACTTGCGTGGATGTTCATTTCAGTATACACCGCGTTGTCCTTGACACC
TGTCTGGGAGCATTAGATAGTAGTGATGCACATGCCGTGCTTCAACATCC
AGCGCACTGGCGAACCGGTTTGCTTGCCACAAGCGAGATCCGCGAAACAG
CAGCAGCATCGTAATGGGTCTCTCCTCGTGAGCCTGTTGAGGCCTGGTAC
TATTTAGCTATTTAGCAAATTGGGTCTTTCGTATGTGCTCCCATCAAGTC
CTTCCACACAACCACTAAGCACCGAACTTGACTGATGCGAAAGCTTGTGA
GGTTCGGAAGGCGTCAACATTTGCCCCCTCCTCTCTCATGCGTTGTATGC
TTAGCCGCATGAAGACGTAATGATCGGCTTGGCTGCGTCCAGAACGCCGC
ACGCTGATAATTGATAAGTGTACGCGGCGGCGCCAATTTTTTTGAGGCGT
TTTTATCTGTGTGGTCTTGTGTTTTTTTTTTTGCAGATGGGTGTAGGTCG
TTGAACTGGTGTACACAGCCCCAGCAAGCACAGCGTGCACAAGGGCATGT
ACAAGTCCAAACAGACGTCGCCCGCACCTCACTTGAAGAACGGGACGGAG
CAGCGTTCCCCCATTGATAGCGCGTACCATAATGCGTGGAAACAGAGTGA
AGGGATGACTCTTTACCCCCATCCCATAACCGAACATGGCGTGGGAAGCA
AACGGCTGTTTTGCTTTCGACGTGCGTGCGGGGTCCCGTGTCTTTGTGAC
GCGGTCTGCAAGCCTCGTTTTTTAACCATCGGAGGTCCCGAGACTAGAGT
TGCATCGAGTTTCTACTGTCCTCAGCTTGAAAACTGCAGGTTGACCATGT
CCCCAACTTGTTGTTTTGCTTCGGTGGGAGATATCTATTGATGGTAGAAT
TGAAAAGCAAAGTAAGAGAACAAGGTGGGACGACAAAACCCGAAAACAAA
TCCGTCTTACAATAGGTGGTACTAGACGGCGGGCAGCTGCTTGTTGTGGC
CGCGCCGTTGTTTTTTCTTATGTTTTGACCATTACTGTTTTTAGTTCTCT
TGCGTGTTGTGTCTACTATCGATCCACAGGTACCCCAGCGCTGCGGGTAA
GATCGTATCGAACGGCCCGTACTCGTCTGTGTCGGAGATCTACAGCATCA
AGGGACTCTCCAGTGAGTACTGTTGCTGTTGCGGCGGATCAGTCAGCGGG
AAGAGCGCAACTGCTGTGTGCTGTTTTGTTTGGCAGCGTGTTCCGTAGAG
AGTGTACATCGCTTTGCTTGCGTGAAGCTATAATAACGAGGGAACTCGCG
GTATCTTGGGCTGTGTTCAACTGTACTTACCGAGGACGGGTCAGAGCATG
ACATGTGTGACGGCTACTCGTTTTGTGACGCCTCGTCTGCTTGACGAGTC
GATAACTCATACGCTTTCTGGTCTGATTTCTTGCAATTTAAAAGTTGCAC
ACCTACAGCAAATGCGGGAATCGGCGGGTGAGACAGGTCGCAATTCGCCG
GTTTGCTGATCGTGTAGCACATTTTTGAGTAGCGGGAACTCAGTTGTTTC
TTCTATTTTTGGTTTGCAGGGGTTGCAAAGAGTGGAGTATTGACACCTAA
ACGATATCTCTGGTGCCTCATCAGAAGTCCTCATTATATGAGTTCACTAC
AGTACACCGCCAGCTTTTGTGGCTGGAGTAAAGCACTTTGTTGGTATTGA
GCCGAGAACTGTTCTGGTTGTCACCCACTTCTGTCGCTCCCTACAGCATC
ATGGTCTCACCAAGTGGTTCCGCGTCGGCGTCAAATGTAGTTTGTCCGCA
CGTACGAAACCATGACAGCATGTAACTTTGTTCCTTACGTGTACGTATCT
CTCTCTGTCTTTCTCGCCAACGCAGACGAGGAGAAGGCGGCGATCAAGAA
GCACGAGAGCAGGTTCATCACCATGGACCCCCAGGCCATGTACACGATCG
ACCGCATCAACAACGGCCTCTACCGGTAAATTTTCCACCTTGGCCTCCGG
CAACCGTCGGTCGCTTTTTCTGGAATTTTTCCTGAGGAAAACGGACCACG
ACGGAACCCCCCTAAAAGCTGGGTGACGGACGGAAGGCCCCACCGCTGTA
CCAGCCCCCACCCATGAACATTTGACGGCCGTTTGCCGTGGATGATGCAA
ATCACCCGGCTTTCAATCGAGAGGATGTGATGCAAGTGTATATGACGCGA
TCCGACTTCGACCGTTTCTCATGGGGAGGGGTGGCGTTGTCGTGTGCCTG
ATTTTTGCGCCAGGGGGTTGGGGGGGGGGGGGTGTTAGAGCGAGAGTTTT
GGTCAAGGTTGTTTTTCTTGCTTTGAAATTGGCTCTGAAGTCATGGAGCG
TTCCTGACTGACGATTTGGGTTGCCGAGCTTGGTAGAAGTCTGCACGCTG
CCACAGCCCGTTCCCTTTCGGGGAAGCCGTTTCAAATTGTTTTTTTTTTT
CTGTACCTGACAGGCGTGTGTGACACTTTTGTTGGGGTTGAATTGAAGTC
TTGGCGCACGCCGCGGAATAGAAAATGCTCTGTTGATGCTTGTTGCGGTA
TTTCGCTGGTGTTCGTTAGATCTGTTGGTTTTAGCCCTTCGTGTAACGAG
ATCGGCAGCGCAGCACGCGTTGCTGTCCCTTTAAAGAATGAAGCGAATCG
TCGCGACTTTGTCAACATGCACACCT
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Coding sequence (CDS) from alignment at chr_28:564427..568702+

>Ec-28_000560.1 ID=Ec-28_000560.1|Name=Ec-28_000560.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=477bp|location=Sequence derived from alignment at chr_28:564427..568702+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAGTTCACTACTGTCGCAGTGCTGGCTTGCGTGGGATCGGCCTCGGC
CTTCGTGCCGCACGCGCTGCCCGCGGCACGCATGAGCGCCAGGACCACCA
CCATGTCGGCCGAGTCGCCCGCAAGCCGCGGGGACTTCCTCAAGTCGGCG
GCGGGAGCGGCCGCGCTCTTGGGGCTCGCGGCGCCGGCTTTGGCGGAGGT
GGACAACCCGGTCGTGCCCTTCCTTGGCGGCGGCGACAAGATCGATGTCA
ACAACGCCAACGTGCGCGCGTACATCAAGCTCCAGGGCATGTACCCCAGC
GCTGCGGGTAAGATCGTATCGAACGGCCCGTACTCGTCTGTGTCGGAGAT
CTACAGCATCAAGGGACTCTCCAACGAGGAGAAGGCGGCGATCAAGAAGC
ACGAGAGCAGGTTCATCACCATGGACCCCCAGGCCATGTACACGATCGAC
CGCATCAACAACGGCCTCTACCGGTAA
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Synonyms
The feature 'Ec-28_000560.1' has the following synonyms
Synonym
Esi0098_0012
Esi_0098_0012
PSB