Ec-28_000550.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000550.2
Unique NameEc-28_000550.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length152
Homology
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BLAST of Ec-28_000550.2 vs. uniprot
Match: D7G9D9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9D9_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 7.980e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:  155 WESFCAYAVTGAGKRRRAKTRRRKRAEGIQVERKERNMSESLDASLSGFVNVLGVLVFVSITVYHVVTANRKDIAS 382
            WESFCAYAVTGAGKRRRAKTRRRKRAEGIQVERKERNMSESLDASLSGFVNVLGVLVFVSITVYHVVTANRKDIAS
Sbjct:    3 WESFCAYAVTGAGKRRRAKTRRRKRAEGIQVERKERNMSESLDASLSGFVNVLGVLVFVSITVYHVVTANRKDIAS 78
The following BLAST results are available for this feature:
BLAST of Ec-28_000550.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9D9_ECTSI7.980e-39100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:560087..563591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1463
Hectar predicted targeting categoryother localisation
Gene idEc-28_000550.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000550Ec-28_000550Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 560087..563591 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000550.2.1Ec-28_000550.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 560087..560241 +
Ec-28_000550.2.2Ec-28_000550.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 562284..563591 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0005505UTR:Ec-28_000550.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 560087..560241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000550.2CDS:Ec-28_000550.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 563136..563591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000550.2Ec-28_000550.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 563136..563591 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000550.2 ID=Ec-28_000550.2|Name=Ec-28_000550.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=152bp
MLTFPRSASPGMSSPLSSENISYCSGIHRPHRLKHGVTSTSDTCTLAASH
CRPFLDRVLWISAESVDQQRPSRLGGFRGVVSVRDFRKAIHVCRSVASTE
VLLIRSGLEHFDGPLKPLAQPFLHGRGHKRRFETVLCETINIRWKSKHTT
NA
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spliced messenger RNA

>Ec-28_000550.2 ID=Ec-28_000550.2|Name=Ec-28_000550.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1463bp|location=Sequence derived from alignment at chr_28:560087..563591+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CGAACGGGATTTTGAAGAACCTCTCAACGCCGTACTCTCTCAAACCGTCA
CACACACCCGCTCTGGCTCCCTCGGTCTTCGCGTGGCCATCCACCCAAAG
GTAGTTGCCATCCGCTAGGCAAACCTGCGGTAGTTGCGAGGAGAAATAAT
CAAAGGTGGGAAAGCTTTTGCGCATACGCGGTGACAGGTGCTGGCAAGAG
GAGAAGGGCGAAGACGCGAAGGCGGAAAAGAGCAGAGGGAATCCAGGTCG
AAAGGAAGGAGCGCAACATGAGCGAGAGCCTGGACGCATCGCTGTCGGGG
TTCGTCAACGTGCTCGGAGTCTTGGTGTTTGTGTCCATCACCGTGTACCA
CGTAGTCACGGCCAACCGAAAAGACATTGCATCATGACGAACCGATGGGG
AGATATTTATCGGGCAGGTTCGCATGGTAGTTAAATTATCGATGGCGTCA
CACCGCTGATTCTCGCTATAAATGCGCACTTTCGTAGCACTTCCGGCGTT
TGGACCCTGCTACTCGATCGCGTTTCTCAGCCGGAACACAAAACGCTTGG
GCGTATTTCGCGTGTTTTGTGTGTGTGTCCCTCTTCATTCGGCGTACCAA
CGATGGGGCTATCTTCTAGGGGCGGGGCGGTTGGTCGGTTTCCATGCGCC
GTCGGCGTGAAGGAGCAAGGTCATGGCGCTCGTTAGCGCACGCTTGTATC
GCTGCGCCTGTTCTTGATGTGCTTGCGATTGCGGCAGATGCGTTGGTTGG
ATTTGGCTTCAAAATGTGTGGGAATCTTGGAGAGCGTGTTTTTGTGGAAC
TTGAAATCCTTGGCTTGAAATTGATTTTGGCCGCAAGTCCAATTTTGTAA
TTTCGGCGGTTTCGTTTCTGTCGCGATGCAAGGCGTCGATAGTATCACGG
CTGCAAAGTGGAGGCCCGCCCTTTGCGCTATGAGCCGGCCTTGGTTGAAT
CTTTAAGATCTTCTACCAAGGTACACCCTGAGATGGGTTCCTGCCGCGCT
TGGAAACATGCTTACGTTTCCCCGGAGTGCATCACCGGGGATGTCTTCTC
CCCTATCCTCTGAAAACATCAGCTACTGTAGTGGAATACACCGGCCTCAT
CGTCTGAAGCATGGAGTGACCAGCACGTCTGATACATGTACCCTGGCAGC
CAGCCATTGTCGTCCCTTCCTGGATAGGGTTCTGTGGATAAGCGCTGAAT
CTGTTGATCAACAACGACCATCTCGACTAGGGGGTTTTCGTGGTGTAGTA
TCTGTCCGTGACTTTCGAAAGGCCATCCATGTCTGTCGGTCTGTTGCATC
GACAGAGGTGTTGTTGATACGTTCTGGACTGGAGCATTTTGACGGCCCCC
TCAAACCGCTTGCACAGCCGTTCCTACATGGGAGGGGTCACAAGCGACGA
TTTGAAACGGTTCTCTGCGAAACAATCAACATCAGGTGGAAGTCGAAACA
CACAACCAACGCA
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protein sequence of Ec-28_000550.2

>Ec-28_000550.2 ID=Ec-28_000550.2|Name=Ec-28_000550.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=152bp
MLTFPRSASPGMSSPLSSENISYCSGIHRPHRLKHGVTSTSDTCTLAASH
CRPFLDRVLWISAESVDQQRPSRLGGFRGVVSVRDFRKAIHVCRSVASTE
VLLIRSGLEHFDGPLKPLAQPFLHGRGHKRRFETVLCETINIRWKSKHTT
NA
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mRNA from alignment at chr_28:560087..563591+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000550.2 ID=Ec-28_000550.2|Name=Ec-28_000550.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3505bp|location=Sequence derived from alignment at chr_28:560087..563591+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CGAACGGGATTTTGAAGAACCTCTCAACGCCGTACTCTCTCAAACCGTCA
CACACACCCGCTCTGGCTCCCTCGGTCTTCGCGTGGCCATCCACCCAAAG
GTAGTTGCCATCCGCTAGGCAAACCTGCGGTAGTTGCGAGGAGAAATAAT
CAAAGGTGAGGTCCTTGTTTCAGTATCCGATTCGCTTGTGTCCAATGTCC
AACCTCGTGAGGTACGTACCGCGAATCCCCCGTCCCCCTCTCAATCTCTC
AGCATCTCCGCCAAGGCAACGGAACTTTCGGTTGTGGCGAATCGGCAGAT
GCCGGGGATAGCCGGGAATGCTGCACACGAACTATGCCCTCCCTCTCATC
AGACTTATGCTAAGGGTACGATTGCTGCTGTAAGCGTTCGCGATGCTGTG
TCGCTTTTACCCGCCTGTGGGTGCGGCGTGATTGTCACCCAACGATACCT
CTCGGTAGGGCAGATCGAGCACACTAGTTGAGACTTTGCCAACCAACCAT
GCACTTGTAGGACAGGAGGACGCCTGGTGTGCGGCTGGGGTGGAGCCGCA
TATGATGTCCCGATTTACAACAGCAGTGACAACAGCACAGCTCACGCAGA
GTTAGTTAACGATGGGTTACCGAGAGGATAACTTGTAGCTGTCGCTGTTT
GGTACTGCGTACCGCTGACCATCACCGTTTGGTCACGGAAGGCGAGGAAA
AACTCTATCGTTGCGTGTTGCAACATAGCTGAATCACCATACAGCCGTAC
GTGATGGTCGGCCATATGGGGCGTTACTCTCCCTTGATGAACCACATTGC
GGAAATCGGCGGGTTATCTGATACCTTGAGGTCGCCGTACAGTAGTAGTA
GATGACCACCACCCTTCAATCCTTGCTTCCTCGCCCACGGGATAGATCAT
GAGCTAATAGCTCACCTACTGCTGTATGTCTCACAGATCAGCATGGAGCC
TACTCAGCTCACCTATATGTAGCAGGTTAGCATGGAGCAAACATACTCAG
CTCACCTACCGTATATGACACAAGATAACACACCCCCTTGGCCGATTTTC
AAAGCTCAATTTCTCAACAGCAGGAAGAGTCACAGCGCCGAAAACGGCGG
CGTTGGAACCGTCTCGTCGAGAGCTGTTCGAAAACGTATTGTTTCGTTTA
TGCATCCTCTTCGTCGTGGAGTAATCGAGCTTTGAAAATCGGTCCAGGGG
GTGTGTTATCTTGTGTCATATACGGTATGTCCTTCGGATACTACCATGGA
ACAAACATACTCAGATCACCTCCGTCTGAACCCTTCGCTATTAGCAGCCG
TAGCGTCACCGCACCAATCGACTGAGAGATGGTTGTGATGTCTGAGGGAG
AGATACATCACTGTTGTAGTAGAGCTTGGGGCTACCTAGACGTCGGCTCA
GCCGTACCGTTACCGGGCCAACCGATAAGGAGATGATCGTGATTTGTGAT
GGAGATATATGCGTACGTCGCTGTTATTGTTGAGAAATGTCCTGTCTAGG
CACCGGCCTTACATGCCTCAAACGCAACGCGTTCTTCCGTCTACGTCCCA
GCCTTTGAAAACTTGAAGATGGTCTGCGTATTGATGTCATCGGAACAACA
AGTAACACTGGATCTGTCACTTCAAGTCTGTACTTTCGCTCTATCGATGA
GTCAGACGTCCGGTGAACCCGTACGGCTGCATCATTCGACCTCGGTATTT
TTGCCCTTTACGACAGTAAGCTTAGATAGAGGGTGCACAGCAGTCATTCG
CCTTGTGGAGCTCAGTGCCAACACATCCTTAACGCCTCACGGCGAATTAG
TCGCCCTCGCCGGGCTTTTCCTTGCTTGGCAAACAATGTTATCGTCGCAA
TGAAGCTACCCTTGCACCCTGTGCTGATCAGCGCCGCAGCAGAACTTTCA
GGAGCTATGCATATCTACGGGACTGCTGCAATCACGTGTTTCCTCGCACT
CTTCAAATCGTGCGCATCGATCAATCTGCGGGCGTTGTTTCTTTTCGTCG
CTTCTCAAGTGGGCACTGCCATGGCCCCCCCCCCCCCCCCCCAATGGTCA
AACGATTACGGCATGCACGACTATGAGTACACCCCCCCCCCCGCCCGTTC
GATTTTTAGGTGGGGGTAATACCAAGCCCTTCTCTTACCGCCCAGTTTCC
TTCCCTTCCCCACCCTGTGCCTACATGCGCCGGTATCGTGCCGACAGGTG
GGAAAGCTTTTGCGCATACGCGGTGACAGGTGCTGGCAAGAGGAGAAGGG
CGAAGACGCGAAGGCGGAAAAGAGCAGAGGGAATCCAGGTCGAAAGGAAG
GAGCGCAACATGAGCGAGAGCCTGGACGCATCGCTGTCGGGGTTCGTCAA
CGTGCTCGGAGTCTTGGTGTTTGTGTCCATCACCGTGTACCACGTAGTCA
CGGCCAACCGAAAAGACATTGCATCATGACGAACCGATGGGGAGATATTT
ATCGGGCAGGTTCGCATGGTAGTTAAATTATCGATGGCGTCACACCGCTG
ATTCTCGCTATAAATGCGCACTTTCGTAGCACTTCCGGCGTTTGGACCCT
GCTACTCGATCGCGTTTCTCAGCCGGAACACAAAACGCTTGGGCGTATTT
CGCGTGTTTTGTGTGTGTGTCCCTCTTCATTCGGCGTACCAACGATGGGG
CTATCTTCTAGGGGCGGGGCGGTTGGTCGGTTTCCATGCGCCGTCGGCGT
GAAGGAGCAAGGTCATGGCGCTCGTTAGCGCACGCTTGTATCGCTGCGCC
TGTTCTTGATGTGCTTGCGATTGCGGCAGATGCGTTGGTTGGATTTGGCT
TCAAAATGTGTGGGAATCTTGGAGAGCGTGTTTTTGTGGAACTTGAAATC
CTTGGCTTGAAATTGATTTTGGCCGCAAGTCCAATTTTGTAATTTCGGCG
GTTTCGTTTCTGTCGCGATGCAAGGCGTCGATAGTATCACGGCTGCAAAG
TGGAGGCCCGCCCTTTGCGCTATGAGCCGGCCTTGGTTGAATCTTTAAGA
TCTTCTACCAAGGTACACCCTGAGATGGGTTCCTGCCGCGCTTGGAAACA
TGCTTACGTTTCCCCGGAGTGCATCACCGGGGATGTCTTCTCCCCTATCC
TCTGAAAACATCAGCTACTGTAGTGGAATACACCGGCCTCATCGTCTGAA
GCATGGAGTGACCAGCACGTCTGATACATGTACCCTGGCAGCCAGCCATT
GTCGTCCCTTCCTGGATAGGGTTCTGTGGATAAGCGCTGAATCTGTTGAT
CAACAACGACCATCTCGACTAGGGGGTTTTCGTGGTGTAGTATCTGTCCG
TGACTTTCGAAAGGCCATCCATGTCTGTCGGTCTGTTGCATCGACAGAGG
TGTTGTTGATACGTTCTGGACTGGAGCATTTTGACGGCCCCCTCAAACCG
CTTGCACAGCCGTTCCTACATGGGAGGGGTCACAAGCGACGATTTGAAAC
GGTTCTCTGCGAAACAATCAACATCAGGTGGAAGTCGAAACACACAACCA
ACGCA
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Coding sequence (CDS) from alignment at chr_28:560087..563591+

>Ec-28_000550.2 ID=Ec-28_000550.2|Name=Ec-28_000550.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=456bp|location=Sequence derived from alignment at chr_28:560087..563591+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTTACGTTTCCCCGGAGTGCATCACCGGGGATGTCTTCTCCCCTATC
CTCTGAAAACATCAGCTACTGTAGTGGAATACACCGGCCTCATCGTCTGA
AGCATGGAGTGACCAGCACGTCTGATACATGTACCCTGGCAGCCAGCCAT
TGTCGTCCCTTCCTGGATAGGGTTCTGTGGATAAGCGCTGAATCTGTTGA
TCAACAACGACCATCTCGACTAGGGGGTTTTCGTGGTGTAGTATCTGTCC
GTGACTTTCGAAAGGCCATCCATGTCTGTCGGTCTGTTGCATCGACAGAG
GTGTTGTTGATACGTTCTGGACTGGAGCATTTTGACGGCCCCCTCAAACC
GCTTGCACAGCCGTTCCTACATGGGAGGGGTCACAAGCGACGATTTGAAA
CGGTTCTCTGCGAAACAATCAACATCAGGTGGAAGTCGAAACACACAACC
AACGCA
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Synonyms
The feature 'Ec-28_000550.2' has the following synonyms
Synonym
Esi0098_0011
Esi_0098_0011