Ec-28_000490.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000490.1
Unique NameEc-28_000490.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length155
Homology
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BLAST of Ec-28_000490.1 vs. uniprot
Match: D7G9D3_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9D3_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 2.000e-103
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 2 
Query:  125 MASAGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLCGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYRQVCKQKYQEGAGEA 586
            MASAGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLCGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYRQVCKQKYQEGAGEA
Sbjct:    1 MASAGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLCGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYRQVCKQKYQEGAGEA 154
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BLAST of Ec-28_000490.1 vs. uniprot
Match: A0A0D9UZJ3_9ORYZ (UBC core domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9UZJ3_9ORYZ)

HSP 1 Score: 203 bits (517), Expect = 3.420e-58
Identity = 92/144 (63.89%), Postives = 112/144 (77.78%), Query Frame = 2 
Query:  146 VTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLCGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYRQVCKQKYQEGA 577
            V RRLQ ELM +MMG DPG SAFP  DN+F+W  T+ GS  TAYEG +Y+L L FP  YPYK P + FETPCFHPNVD HGNICLDIL++KWSSA+ V TIL S++SLL +PNNESPLNT+AA LW DQD++R++  + Y+  A
Sbjct:   53 VMRRLQSELMSLMMGGDPGISAFPEGDNIFQWVGTIAGSAATAYEGTSYRLSLAFPGEYPYKPPKVRFETPCFHPNVDAHGNICLDILQDKWSSAYDVRTILLSVQSLLGEPNNESPLNTQAAALWPDQDEFRKMVHKLYKPAA 196
[Close]
BLAST of Ec-28_000490.1 vs. uniprot
Match: A0A7S3B7L5_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3B7L5_9VIRI)

HSP 1 Score: 203 bits (517), Expect = 4.150e-58
Identity = 94/146 (64.38%), Postives = 114/146 (78.08%), Query Frame = 2 
Query:  146 VTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLCGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYRQVCKQKYQEGAGE 583
            V++RLQ ELM +M G DPG SAFP  +NLF W  T+ GS  T YEGLT+KL+L FP+ YPYKAP +TFETPCFHPNVD+ GNICLDILKEKWSSA+ V T+L S++SLL +PNNESPLN  AA LWA+Q++Y+ V  +K  E  GE
Sbjct:   56 VSKRLQSELMKLMCGGDPGVSAFPEGNNLFSWVGTIVGSAGTVYEGLTFKLRLKFPNDYPYKAPQVTFETPCFHPNVDQFGNICLDILKEKWSSAYDVRTVLLSIQSLLGEPNNESPLNGYAATLWANQEEYKAVLHKKCAEAEGE 201
[Close]
BLAST of Ec-28_000490.1 vs. uniprot
Match: A2ZRP5_ORYSJ (Os01g0273100 protein n=11 Tax=Oryzeae TaxID=147380 RepID=A2ZRP5_ORYSJ)

HSP 1 Score: 202 bits (514), Expect = 7.710e-58
Identity = 91/147 (61.90%), Postives = 113/147 (76.87%), Query Frame = 2 
Query:  137 GGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLCGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYRQVCKQKYQEGA 577
            G  V RRLQ ELM +MMG DPG SAFP  DN+F W  T+ GS  TAYEG +Y+L L FP  YPYK P + FETPCFHPNVD HGNICLDIL++KWSSA+ V TIL S++SLL +PNN+SPLNT+AA LW +QD++R++ ++ Y+  A
Sbjct:   45 GQSVVRRLQSELMALMMGGDPGVSAFPEGDNIFSWVGTIAGSAATAYEGTSYRLSLAFPGEYPYKPPKVRFETPCFHPNVDAHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNTQAAALWPNQDEFRKMVEKLYKPTA 191
[Close]
BLAST of Ec-28_000490.1 vs. uniprot
Match: I1HED7_BRADI (UBC core domain-containing protein n=11 Tax=Pooideae TaxID=147368 RepID=I1HED7_BRADI)

HSP 1 Score: 201 bits (511), Expect = 1.520e-57
Identity = 90/143 (62.94%), Postives = 113/143 (79.02%), Query Frame = 2 
Query:  137 GGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLCGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYRQVCKQKY 565
            G  V RRLQ ELM +MMG DPG SAFP  DN+F+W  T+ GS  TAYEG +Y+L L FP  YPYK P + FETPCFHPNVD HGNICLDIL++KWSSA+ V TIL S++SLL +PNN+SPLNT+AA LWA+Q+++R++ ++ Y
Sbjct:   36 GQSVVRRLQSELMALMMGGDPGVSAFPEGDNIFQWVGTIDGSAATAYEGTSYRLALSFPSDYPYKPPKVKFETPCFHPNVDTHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNTQAAALWANQEEFRKMVEKLY 178
[Close]
BLAST of Ec-28_000490.1 vs. uniprot
Match: A0A2R5GGQ9_9STRA (Ubiquitin-conjugating enzyme E2 C n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGQ9_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.910e-57
Identity = 93/147 (63.27%), Postives = 115/147 (78.23%), Query Frame = 2 
Query:  131 SAGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLCGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYRQVCKQKYQE 571
            ++G  VT+RLQQELM +M   D  A+AFP+ DNLF W+  + G+ +T YEGL+YKL + FP  YPY AP I F TPCFHPNVD HGNICLDILKEKWS+ +SVSTIL SLRSLL+DPNN+SPLN  AAQLW +Q++Y++V  +KY E
Sbjct:    7 ASGESVTKRLQQELMQLMRDGDSNATAFPDGDNLFSWSGNINGAPETVYEGLSYKLHIDFPSNYPYTAPTIRFVTPCFHPNVDAHGNICLDILKEKWSATYSVSTILTSLRSLLSDPNNDSPLNGVAAQLWDNQEEYKRVLLKKYDE 153
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BLAST of Ec-28_000490.1 vs. uniprot
Match: K3XMD9_SETIT (UBC core domain-containing protein n=21 Tax=Panicoideae TaxID=147369 RepID=K3XMD9_SETIT)

HSP 1 Score: 199 bits (506), Expect = 8.400e-57
Identity = 89/147 (60.54%), Postives = 114/147 (77.55%), Query Frame = 2 
Query:  137 GGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLCGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYRQVCKQKYQEGA 577
            G  V RRLQ ELM +MMG DPG SAFP+ DN+F W  T+ GS  TAYEG +Y+L L F   YPYK P + F+TPCFHPNVD HGNICLDIL++KWSSA+ V TIL S++SLL +PNN+SPLNT+AA LWA+Q+++R++ ++ Y+  A
Sbjct:   36 GQSVVRRLQSELMALMMGGDPGVSAFPDGDNIFNWVGTIAGSAGTAYEGTSYRLALAFTAEYPYKPPKVRFDTPCFHPNVDTHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNTQAAALWANQEEFRKMVEKLYKPAA 182
[Close]
BLAST of Ec-28_000490.1 vs. uniprot
Match: A0A5A8DJT4_CAFRO (UBC core domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DJT4_CAFRO)

HSP 1 Score: 198 bits (503), Expect = 1.950e-56
Identity = 92/151 (60.93%), Postives = 119/151 (78.81%), Query Frame = 2 
Query:  128 ASAGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLCGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYRQVCKQKYQEGAG 580
            A+A G   +RLQ ELM ++M A+PG SAFP  DNLFEW  T+ GS++T +EG+ ++++LVFP  YP+KAP +TFETP FHPNVDE GNICLDILKE+WS+A+SV T+L S+RSLL +PNN+SPLN  AA LW +Q +YR+VC  KY+E  G
Sbjct:   26 AAASG---KRLQAELMQLVMAAEPGVSAFPAGDNLFEWIGTIDGSKETVFEGMKFQMRLVFPAQYPFKAPQVTFETPVFHPNVDESGNICLDILKEEWSAAYSVKTLLVSIRSLLGEPNNDSPLNAHAAGLWDNQAEYRRVCVAKYEEATG 173
[Close]
BLAST of Ec-28_000490.1 vs. uniprot
Match: UPI000719B6E0 (ubiquitin-conjugating enzyme E2 C-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719B6E0)

HSP 1 Score: 197 bits (501), Expect = 4.060e-56
Identity = 87/141 (61.70%), Postives = 113/141 (80.14%), Query Frame = 2 
Query:  146 VTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLCGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYRQVCKQKYQ 568
            VT+RLQQELM +MM  D G SAFP+ DNLF+W  T+ G++ T YEGLTYKL L FP  YPY+AP++ F+TPCFHPNVD+ GNICLDILKEKW++++ V +IL S++SLL +PNNESPLN +AA +W DQ  YR++  +KY+
Sbjct:   32 VTKRLQQELMALMMCGDKGISAFPDGDNLFKWVGTIHGAQSTVYEGLTYKLSLEFPCAYPYQAPVVKFQTPCFHPNVDQSGNICLDILKEKWAASYDVRSILLSIQSLLGEPNNESPLNVQAADMWIDQTAYRKILHEKYE 172
[Close]
BLAST of Ec-28_000490.1 vs. uniprot
Match: UPI001E1D6D80 (ubiquitin-conjugating enzyme E2 C-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D6D80)

HSP 1 Score: 197 bits (501), Expect = 4.060e-56
Identity = 90/147 (61.22%), Postives = 115/147 (78.23%), Query Frame = 2 
Query:  146 VTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLCGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYRQVCKQKYQEGAGEA 586
            V++RLQQEL  ++M  DPG SAFP+ DNLF W ATL G++ TAYEGL+YKL L FP  YPY+AP + FETPC+HPNVD+ GNICLDILKEKWS+ + V TIL SL+SLL +PNNESPLN +AA+ W +Q +Y+++  +KY + A  A
Sbjct:   31 VSKRLQQELRTLLMSGDPGVSAFPDGDNLFRWVATLIGAKGTAYEGLSYKLSLEFPSGYPYQAPTVKFETPCWHPNVDQSGNICLDILKEKWSALYDVRTILLSLQSLLGEPNNESPLNAQAAEQWNNQTEYKKIVVEKYNKHAAAA 177
The following BLAST results are available for this feature:
BLAST of Ec-28_000490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9D3_ECTSI2.000e-103100.00UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A0D9UZJ3_9ORYZ3.420e-5863.89UBC core domain-containing protein n=1 Tax=Leersia... [more]
A0A7S3B7L5_9VIRI4.150e-5864.38Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A2ZRP5_ORYSJ7.710e-5861.90Os01g0273100 protein n=11 Tax=Oryzeae TaxID=147380... [more]
I1HED7_BRADI1.520e-5762.94UBC core domain-containing protein n=11 Tax=Pooide... [more]
A0A2R5GGQ9_9STRA1.910e-5763.27Ubiquitin-conjugating enzyme E2 C n=1 Tax=Hondaea ... [more]
K3XMD9_SETIT8.400e-5760.54UBC core domain-containing protein n=21 Tax=Panico... [more]
A0A5A8DJT4_CAFRO1.950e-5660.93UBC core domain-containing protein n=2 Tax=Cafeter... [more]
UPI000719B6E04.060e-5661.70ubiquitin-conjugating enzyme E2 C-like n=1 Tax=Pri... [more]
UPI001E1D6D804.060e-5661.22ubiquitin-conjugating enzyme E2 C-like n=1 Tax=Mer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:496365..502211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.1
Seed ortholog evalue5.7e-85
Seed eggNOG ortholog2880.D7G9D3
Preferred nameUBE2C
Length1912
KEGG koko:K06674,ko:K06688,ko:K08707
KEGG Pathwayko04111,ko04120,map04111,map04120
Hectar predicted targeting categoryother localisation
Gene idEc-28_000490.1
GOsGO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0000280,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007096,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010458,GO:0010498,GO:0010564,GO:0010604,GO:0010638,GO:0010948,GO:0010965,GO:0010992,GO:0010994,GO:0016020,GO:0016043,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022607,GO:0030071,GO:0030163,GO:0031145,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031536,GO:0031625,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032436,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034622,GO:0036211,GO:0042176,GO:0042592,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045930,GO:0045931,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051258,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0062033,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0070979,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090068,GO:0090231,GO:0090233,GO:0090266,GO:0140014,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901976,GO:1901977,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902426,GO:1902494,GO:1903047,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903504,GO:1904666,GO:1904668,GO:1905818,GO:1905820,GO:1990234,GO:2001252
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0421@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000490Ec-28_000490Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 496365..502211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000490.1Ec-28_000490.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 496490..500889 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000490.1.1Ec-28_000490.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 496365..496521 +
Ec-28_000490.1.2Ec-28_000490.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 499068..499185 +
Ec-28_000490.1.3Ec-28_000490.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 499841..500042 +
Ec-28_000490.1.4Ec-28_000490.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 500777..502211 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0004905UTR:Ec-28_000490.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 496365..496489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000490.1CDS:Ec-28_000490.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 496490..496521 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0004903UTR:Ec-28_000490.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 500890..502211 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000490.1 ID=Ec-28_000490.1|Name=Ec-28_000490.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=155bp
MASAGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLCGSEDTA
YEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWS
SAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYRQVCKQKYQEG
AGEA*
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spliced messenger RNA

>Ec-28_000490.1 ID=Ec-28_000490.1|Name=Ec-28_000490.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1912bp|location=Sequence derived from alignment at chr_28:496365..502211+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TTTTCCGTTCCCCGCACACACACCCAGCGAGCACACCTACACACCTACAC
GCCAGGGAGAGAGAGCTGCTGCTGCACACTACACATACACACACATAATT
TTTTTTGAGAATCGTCGGTGAAAGAATGGCGTCCGCCGGTGGAGATGTTA
CCAGGAGGCTGCAGCAGGAGCTGATGGGTATCATGATGGGCGCGGACCCC
GGCGCCTCGGCATTTCCCAACGACGACAACCTGTTCGAGTGGACGGCCAC
GCTTTGCGGGAGCGAAGACACGGCGTACGAAGGGTTGACGTACAAGCTCA
AGCTGGTGTTCCCGGACACTTATCCGTACAAGGCACCGCTCATCACCTTC
GAGACCCCCTGCTTCCACCCCAACGTGGACGAGCACGGCAACATCTGCCT
CGACATCCTCAAGGAGAAGTGGTCCTCGGCCTTCAGCGTCAGCACCATCC
TGCAGTCTCTCCGATCCTTGCTAGCCGACCCCAACAACGAGAGCCCCCTG
AACACGGAGGCGGCGCAGCTGTGGGCGGATCAGGACAAGTACCGACAAGT
TTGCAAGCAGAAGTACCAGGAGGGCGCGGGGGAAGCCTAACGATGGGTCA
CGTGTCGGCGTTTCCGGCCGTGTTGTCTCTCACGAGAATTGGTCCTGGCA
GGCATGTGCTTGCTAGCTAGTGCTCGCCGCATTCTCCGGCAAGAGCCTGG
GCGGCTTGCTCGCACCTTCGCAGATTTTTGCACCATTTCACCCCTCTTTC
TCCCTAGTGTCGCCGAAGATGTGTAGTAGCAGCGGCGGCAGTGTACCAGT
ATAATAGGCACTTCCAACGTGCGTGATGGAGTGGAACACGACGCGTGCGT
GTGTTTGACCTGTGATTCGGTACGCACCTGGTGCGTTTTATGGGTTGACA
CCGCTTTGCGGACAGCGGCAAGGGTCGTGTGTCCATCAAACCTTTGTCAA
GTGTATCGGTATCTTGTTTGTCTGGAGAGTCGACGCGAGTGGTGTTGGCT
TGTCCGAAGGCCATTGCTGCGCGTCGTGTCTTTGCCACTATCGTGTCTGG
AGAGTCGTCGCGAGTGGTGTTGGCTTCGTCCGAAGGCCATTGCTGCGCGT
CGTGTCTTTGCCACTATCGTTATCATGAGCAGCTTTCTGTGCGTGCCCCC
AAGTTCTTCTACAGCTGGTAGTTCAGTCTGGTTGAAGAGCGTGGTCGCTT
TTAAAGCCGAAAGCATCAGCGGGTGTGTTATTTTATCTTGTTGTCATGTG
TGCGCGCGGGGGGGTCTCTCTTGGACGTGGATGGCGGAGGAGGAGTCTGG
TAGCAATTGCTTCATGTCATGGCTGCTGTCGCTTGTATCTGTTTACTCGT
TCTTCGTTTCGGTCACGCCCAGCGTCAACTTTGATTGACAACACCTAGTA
CTCTTGTTGGCGTTTCGCTTGATAATTTTGTGAGAATCTTTCGTTCTACA
TTCAGCTCGTGGGTGATAAATGGATGGTCTGACTTACCCTCGGTACAAGC
CGGAGGCCATCGTTCCTCGTGTTTCTCTCTATTGAGAGCTGGACCAGTAG
GTTGACCAACTGCTTCTATGATTTTTCCCGGTGTCGGCAATGTTAGTTTA
GGCAGACGTTGGGGAGATTGTACCTTTATGAAAGTGGTCTCCACATTTAG
GTACATAGCGGCGAAGGTCTTGGATAGACGATTGCTTGTTTTTTGAAATT
GGTGGGTTCTTGGTTGTGAAGGATGGTGGAGATTGAACATGGTGCCATCA
GGGGATATATATGCACAAGGCTATTTTGATAGCTTAGCTTGTACAAATCA
ACGAGAAAATAATGATCGCCCGACGTTTGGTGCGTGTTGCGGAAGATGTG
TTGGCTGGTTTCTTGCTCAAAAGCTATGCATACGAGCGCAGTAACCATGG
GTTTGTGTTCCG
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protein sequence of Ec-28_000490.1

>Ec-28_000490.1 ID=Ec-28_000490.1|Name=Ec-28_000490.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=155bp
MASAGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLCGSEDTA
YEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWS
SAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYRQVCKQKYQEG
AGEA*
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mRNA from alignment at chr_28:496365..502211+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000490.1 ID=Ec-28_000490.1|Name=Ec-28_000490.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5847bp|location=Sequence derived from alignment at chr_28:496365..502211+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TTTTCCGTTCCCCGCACACACACCCAGCGAGCACACCTACACACCTACAC
GCCAGGGAGAGAGAGCTGCTGCTGCACACTACACATACACACACATAATT
TTTTTTGAGAATCGTCGGTGAAAGAATGGCGTCCGCCGGTGGAGATGTTA
CCAGGAGGTGAGATGGTTTGTTGTTTTGTGGGGAGACACCAGGAAGGGGA
GCTGTTTTCGTTGTTTCGGACGCGGTGGCTGTGGGTGGGTGTGCGCTGGT
TCTCGGCGCTTGCTTCTTTCTCACTCTCGCCACCTCCTTGCTGCTGGCAC
CTCACCCGCTGATTGAGCCATCGATGCTCACCACTGCGAAGGAAGACAGG
CTGGCGGCTAGCAGCAGGTCGCCGTTGTTTCGAGGCGGGCAGAGCTTGCA
AGCCACAAACCCCCGACAACAGTTTTTTTGGCGCGAACGAACCACAGACC
GCACCAGCCACCAGCAGCGGAGAGACCGATAAGCCAGCAAACTGGCACCA
CACACCGCAGTTCCCCGGCGAACCCCTATTCGCGCACGCACACGCACACG
CACACACGCTTGGCCCAGTAGCTTCATTCGGCCTTGGCGTAGTTGTAGCT
GCAGGAGGCCATCTACTGGATAAACCAGCGGTGTGTGCGGGCACTTGTTG
CAAACCCCCCGCTTGGCGCCAGATCTGCTGTAGACTGCTGCGGTAGACTG
TTGTAGACTACAGCAGTACATAGTATATATCGGGTGCCGCCTTTATTCGT
CGGGGATCGGGGATGGGTGGGGTGAGCAATTGCGGGGCAGGTCCATGTGC
TTTGGGTGATATTCCCTCTGACCCCACGGATGTGGCTTCTGGATTTGCTG
AGATTACTGACCAAAAATGCCGTCGGGCGACATTGAACAAAACTGGGTGC
ATAGATTTTGCACAGAACGGTATCTGCACCGCAAGTAGTTGAGAAGTGAG
TTAGACCGCCATGACAGCAGCAGCACTGCTGTACGTGCAGTACAGCAGTA
GCACCGCTGTTAAGCGCGAAGTCCAACCACTGCGACGCAAAGTGCTTGTC
AGCTGCAGCTGAAAGCAAACATGTACCTGTCGGAGTCAATCTTCATGACC
AAAGTGTGTGTGTGCGGTACAGCAGTCAAAGCGGCAAAGGCTCACAGCAA
AAAAGTCCGTTCGACTGTGGGTATATCTCGAATGGGTAGTCTTTCCGTGT
GTGTTTTATTATTCCTTAATGTATATGTACCACCTCCTTGCGATCGGTAC
ATACGTCTTGGATTCCCGCGCGATTGACCTTCAAACTTTCTCGCTTTGAT
TACGGAACGGCTGGGAAAAACAAAGATGCCGTAAATGTAACCTGTTGTAG
TCTAAAAAATGATGATGCCCAGAGTGGAAATGGAACGACACACACGCACA
CCTGTCATCTATTGGTCAGCCGGCTAGCTAGCGCGGTCGATGCTAATACT
TGAAGTAATAAAGACGCACACAACACACCGAAAAAGATATTGGGAGATCG
ATTGGTCGTGTACTGGGGAGCCCCGATCGGACTGACTGCGACATGTAGGC
AGACTCTGCGGTGCGGGTACGTTATCACCATCCATGCAAGGAGCACTTGA
GCTGCTCCCAATCTCTTATATGCACGAAGACCGGCGCCTGAGCTTCCTTC
CCCCCACAACCGGATAGTTCGCGCCATCCTGAGAACATCTCGCCGGTGCC
ATGTGCCCATCGCAGTCGACGATTTACTCCCATTCACCAGAAGCACAGGT
CGAGGAAAGCACTACAGCAAGCAGTACGAAAAAAAGATGGATAGTTAGTG
ACCCCAATAGGTGACTTGTAGTTGGTTCCGCGCAGGACATGAAGGCGAGG
ATCGGTCTCCCCACGAAGTCGGGTCTCATGTAAGTCACCATCGACAACCT
TGCAGCGAGTGTTCTACAGCAGGAGCATCAACAAATCGATCCAAACGCCG
TCAGGATCCGCCCTCGACCAGAGAACGTCTAGTAAATGGCAAACCACTGC
TGTGCGGGAACTCTCAACCTGTCTACAATTGCAGCTCTACCCTCCTTTCT
GCTCCTTGTTCCACGTATGGTGGTCTTGAGGCAAAATACTCCTAATCGTG
ATCGCAGCTGTCGCTAACCGAGGAAAACGACTCAGCCTTTCGGTAGAACC
CTATGGCTAGAGGTGGGTTCGCGCGCTTTTTCCAGCTGTAAGACTGACGC
GTTTTCATTGGCCAGCCAGTCAGGCCGATGCTTCACAACAAAGAAACACA
CACATTTTGTGTGGAGCCACCTAACTCTTCCTAGCAGAGTCGTTTTCTGT
TGATTATGGATGAATTATTAGTCTTGGTCCACGTCTACCTCCTGCTACTG
TTTGAATCGTTTTCTTCGGGCCGCCACGCAAGAAAAGGGAGTCGTGCCGG
GCGTGTTGGCTCTATCAACACAAACGCTAGTGGATATCGCGTCCCTGTTC
ACCAGCGCGGCATCCGCGTTGGCTGAGAGGCTTGGTGGTGTGCTCACTCA
GCCTTGTCGGGAGCCCGACGCAAATTTGACAGTTTAGTTGGCGTCCACCC
TTTTTTTATTTTTTTTATTTTTTTCCAATAGAGCGCAACGAATCTATCTC
TACCCATAGATGGTATTTTCGTCGCTTTCTTCGTTTCTGCGGCGGCGTGT
CGCACCCCTCGTCCTAACACGCGTGCACGTCGCGTACAACAACCGGACCC
CAGGCTGCAGCAGGAGCTGATGGGTATCATGATGGGCGCGGACCCCGGCG
CCTCGGCATTTCCCAACGACGACAACCTGTTCGAGTGGACGGCCACGCTT
TGCGGGAGCGAAGACACGGCGGTAAGACATACGGCGTGCGCAAGTATGTA
AGTGAGGCGGTGTTGTGAGGAATCTCGAGGGCGCCAAGCATGCGACACGC
GAAGTTTGCGCTGAGGTCTACGGCTCGCTTCCCACCCCGGGAAGCTGCCC
CGAGACCCGGAATTTTTCGATAGGTTTGGGGAGGTTAGTTCCCTGTTGTA
GGAAACACAGCCCTGCTCGTGGCACACGTGGTAGAAAGGTTAAATTATTT
GCCTTTTCTAAGACGAAATCAGGAAAGATCGTGCCCTACTCCTGTCGCCG
GCCATTGAGCCCGGAAGGGACGACCGCACTGGAAGGTACTGATCACATGC
TGGCATCTAATGTATTTTTGAGATCCCGCTATGTTTGCGCAATTTTTGTG
TCCGGGAACATTTCCTCCGGCATTTTGGCGTCGAAAGTCTTCCATAACAT
TGTCGCCCTTCGATGTCAATACATGTAGTGATCGAATGGGTCGGTTGTTC
TGTTGAAGTTCCTGCCACAAAACACCCTCCGAGCTGTTGATTCTGCTTTT
GTAGTCACCGTGATATTCTGGGTCTGAGACGCATTGGAGCTGCGGCAAAC
AGTGCGGTAATTCAATCGCTTCCCGGTTCCGTTGCCCCCCCCCCCCCCCC
AACGTGAAATCGATTACACCGCGTAGTACGAAGGGTTGACGTACAAGCTC
AAGCTGGTGTTCCCGGACACTTATCCGTACAAGGCACCGCTCATCACCTT
CGAGACCCCCTGCTTCCACCCCAACGTGGACGAGCACGGCAACATCTGCC
TCGACATCCTCAAGGAGAAGTGGTCCTCGGCCTTCAGCGTCAGCACCATC
CTGCAGTCTCTCCGATCCTTGCTAGCCGGTGAGCGTTCTGTCTTGTCAAG
CCGCTGCTGCTGTGTCTTCTGACCGTTTGAGGTACAGTGGAGGGCCCTGT
TTACGATGGGCCCAGAGATTTCATCCACCCTGCTATGTATATCGGACACC
GGCATACTAGTCAAGGGTACAGAATGACTTGGTAATTGTGTGTGTGCCCG
CCGGAAACACGGGTACTACACCGGCAACCGGCACAAAACAGGGACCTCTA
CTGCAGGTGTCTTACCAGTTTTTTCTCCGTTTGGCTGTACGGTGAACCGC
GCGGCTTGGGGGTTTGAACCGGGCTTTACGATGCGGCCGGTCATTCTCTT
GCCGTCCTTCGCTGAGTGAGTCGCGGTGTAGTCTTGTTAGACCTCGAAAA
GCACGCGAGGAGATCTCCCGCGCCTTACGGTCCCGAAACCCTCCTTTACC
GGTCAAGTTAAGCGGGTTGCGTCGGCCTGTACGTGGGTATTACTACCCTC
AACATGACCGCCCCTCTTGTGTGGTCACCGCCCGATCTAAACAAGTTGGT
AAGGCGCCCGGCTTTCTATTTCCATGGCAAGAGGAACCGATCACGGGAGG
TTCGAGTAAGTGGTTATACTCACGGTCCCCGGAACGGTCCCAGGGGTAGC
ACGTCGGTAGTGCTTGAAATTGTTCCGAATGTTGGCTTGGTTGTGTTCCA
TGCGTGAAAGCCACCCTTGATTGAGCACAAACCACGCCTTTTTATCCCTC
TCTCTCGCGCAGACCCCAACAACGAGAGCCCCCTGAACACGGAGGCGGCG
CAGCTGTGGGCGGATCAGGACAAGTACCGACAAGTTTGCAAGCAGAAGTA
CCAGGAGGGCGCGGGGGAAGCCTAACGATGGGTCACGTGTCGGCGTTTCC
GGCCGTGTTGTCTCTCACGAGAATTGGTCCTGGCAGGCATGTGCTTGCTA
GCTAGTGCTCGCCGCATTCTCCGGCAAGAGCCTGGGCGGCTTGCTCGCAC
CTTCGCAGATTTTTGCACCATTTCACCCCTCTTTCTCCCTAGTGTCGCCG
AAGATGTGTAGTAGCAGCGGCGGCAGTGTACCAGTATAATAGGCACTTCC
AACGTGCGTGATGGAGTGGAACACGACGCGTGCGTGTGTTTGACCTGTGA
TTCGGTACGCACCTGGTGCGTTTTATGGGTTGACACCGCTTTGCGGACAG
CGGCAAGGGTCGTGTGTCCATCAAACCTTTGTCAAGTGTATCGGTATCTT
GTTTGTCTGGAGAGTCGACGCGAGTGGTGTTGGCTTGTCCGAAGGCCATT
GCTGCGCGTCGTGTCTTTGCCACTATCGTGTCTGGAGAGTCGTCGCGAGT
GGTGTTGGCTTCGTCCGAAGGCCATTGCTGCGCGTCGTGTCTTTGCCACT
ATCGTTATCATGAGCAGCTTTCTGTGCGTGCCCCCAAGTTCTTCTACAGC
TGGTAGTTCAGTCTGGTTGAAGAGCGTGGTCGCTTTTAAAGCCGAAAGCA
TCAGCGGGTGTGTTATTTTATCTTGTTGTCATGTGTGCGCGCGGGGGGGT
CTCTCTTGGACGTGGATGGCGGAGGAGGAGTCTGGTAGCAATTGCTTCAT
GTCATGGCTGCTGTCGCTTGTATCTGTTTACTCGTTCTTCGTTTCGGTCA
CGCCCAGCGTCAACTTTGATTGACAACACCTAGTACTCTTGTTGGCGTTT
CGCTTGATAATTTTGTGAGAATCTTTCGTTCTACATTCAGCTCGTGGGTG
ATAAATGGATGGTCTGACTTACCCTCGGTACAAGCCGGAGGCCATCGTTC
CTCGTGTTTCTCTCTATTGAGAGCTGGACCAGTAGGTTGACCAACTGCTT
CTATGATTTTTCCCGGTGTCGGCAATGTTAGTTTAGGCAGACGTTGGGGA
GATTGTACCTTTATGAAAGTGGTCTCCACATTTAGGTACATAGCGGCGAA
GGTCTTGGATAGACGATTGCTTGTTTTTTGAAATTGGTGGGTTCTTGGTT
GTGAAGGATGGTGGAGATTGAACATGGTGCCATCAGGGGATATATATGCA
CAAGGCTATTTTGATAGCTTAGCTTGTACAAATCAACGAGAAAATAATGA
TCGCCCGACGTTTGGTGCGTGTTGCGGAAGATGTGTTGGCTGGTTTCTTG
CTCAAAAGCTATGCATACGAGCGCAGTAACCATGGGTTTGTGTTCCG
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Coding sequence (CDS) from alignment at chr_28:496365..502211+

>Ec-28_000490.1 ID=Ec-28_000490.1|Name=Ec-28_000490.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=465bp|location=Sequence derived from alignment at chr_28:496365..502211+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGTCCGCCGGTGGAGATGTTACCAGGAGGCTGCAGCAGGAGCTGAT
GGGTATCATGATGGGCGCGGACCCCGGCGCCTCGGCATTTCCCAACGACG
ACAACCTGTTCGAGTGGACGGCCACGCTTTGCGGGAGCGAAGACACGGCG
TACGAAGGGTTGACGTACAAGCTCAAGCTGGTGTTCCCGGACACTTATCC
GTACAAGGCACCGCTCATCACCTTCGAGACCCCCTGCTTCCACCCCAACG
TGGACGAGCACGGCAACATCTGCCTCGACATCCTCAAGGAGAAGTGGTCC
TCGGCCTTCAGCGTCAGCACCATCCTGCAGTCTCTCCGATCCTTGCTAGC
CGACCCCAACAACGAGAGCCCCCTGAACACGGAGGCGGCGCAGCTGTGGG
CGGATCAGGACAAGTACCGACAAGTTTGCAAGCAGAAGTACCAGGAGGGC
GCGGGGGAAGCCTAA
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Synonyms
The feature 'Ec-28_000490.1' has the following synonyms
Synonym
Esi0098_0002
Esi_0098_0002