Ec-28_000290.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000290.1
Unique NameEc-28_000290.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length81
Homology
The following BLAST results are available for this feature:
BLAST of Ec-28_000290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:351039..351281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length243
Hectar predicted targeting categoryother localisation
Gene idEc-28_000290.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000290Ec-28_000290Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 350885..353122 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000290.1.1Ec-28_000290.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 351039..351281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000290.1CDS:Ec-28_000290.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 351039..351281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000290.1Ec-28_000290.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 351039..351281 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000290.1 ID=Ec-28_000290.1|Name=Ec-28_000290.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=81bp
MPLSRAFRYSGYHYIGTTTVLLLHATTCTPSSIGNNKHNLSSPARRGSVA
PALKHQPTVTYKYMCRRTVSSCHDRHPHCS*
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spliced messenger RNA

>Ec-28_000290.1 ID=Ec-28_000290.1|Name=Ec-28_000290.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=243bp|location=Sequence derived from alignment at chr_28:351039..351281+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATTATCTCGTGCATTTCGTTATTCAGGGTACCACTATATCGGGAC
CACTACCGTACTTCTGTTGCATGCCACGACATGCACTCCATCATCAATCG
GAAATAATAAACATAATCTTTCATCCCCCGCCCGCCGTGGCAGCGTGGCA
CCAGCACTTAAACACCAACCTACTGTAACATATAAGTATATGTGCAGAAG
AACCGTTTCCTCCTGTCACGATAGACACCCTCATTGTAGCTAG
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protein sequence of Ec-28_000290.1

>Ec-28_000290.1 ID=Ec-28_000290.1|Name=Ec-28_000290.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=81bp
MPLSRAFRYSGYHYIGTTTVLLLHATTCTPSSIGNNKHNLSSPARRGSVA
PALKHQPTVTYKYMCRRTVSSCHDRHPHCS*
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mRNA from alignment at chr_28:351039..351281+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000290.1 ID=Ec-28_000290.1|Name=Ec-28_000290.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=243bp|location=Sequence derived from alignment at chr_28:351039..351281+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCATTATCTCGTGCATTTCGTTATTCAGGGTACCACTATATCGGGAC
CACTACCGTACTTCTGTTGCATGCCACGACATGCACTCCATCATCAATCG
GAAATAATAAACATAATCTTTCATCCCCCGCCCGCCGTGGCAGCGTGGCA
CCAGCACTTAAACACCAACCTACTGTAACATATAAGTATATGTGCAGAAG
AACCGTTTCCTCCTGTCACGATAGACACCCTCATTGTAGCTAG
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Coding sequence (CDS) from alignment at chr_28:351039..351281+

>Ec-28_000290.1 ID=Ec-28_000290.1|Name=Ec-28_000290.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=243bp|location=Sequence derived from alignment at chr_28:351039..351281+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCATTATCTCGTGCATTTCGTTATTCAGGGTACCACTATATCGGGAC
CACTACCGTACTTCTGTTGCATGCCACGACATGCACTCCATCATCAATCG
GAAATAATAAACATAATCTTTCATCCCCCGCCCGCCGTGGCAGCGTGGCA
CCAGCACTTAAACACCAACCTACTGTAACATATAAGTATATGTGCAGAAG
AACCGTTTCCTCCTGTCACGATAGACACCCTCATTGTAGCTAG
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Synonyms
The feature 'Ec-28_000290.1' has the following synonyms
Synonym
Esi120_0088
Esi_120_0088