Ec-28_000190.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000190.1
Unique NameEc-28_000190.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length273
Homology
[Close]
BLAST of Ec-28_000190.1 vs. uniprot
Match: D7FIG5_ECTSI (Similar to Leucine rich repeat containing 15, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG5_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 1.860e-55
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 3 
Query:  381 MSDCGLTNDDLDDIRSCLEAAGVSTIVELLLDTNGLTALKPDVSGSSGTFDGMTSLEVLSLSANELTTLPADLFGSLTSLVSLFVDDNSDLTCLPDIPS 677
            MSDCGLTNDDLDDIRSCLEAAGVSTIVELLLDTNGLTALKPDVSGSSGTFDGMTSLEVLSLSANELTTLPADLFGSLTSLVSLFVDDNSDLTCLPDIPS
Sbjct:    1 MSDCGLTNDDLDDIRSCLEAAGVSTIVELLLDTNGLTALKPDVSGSSGTFDGMTSLEVLSLSANELTTLPADLFGSLTSLVSLFVDDNSDLTCLPDIPS 99
[Close]
BLAST of Ec-28_000190.1 vs. uniprot
Match: D8LR92_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR92_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 5.800e-14
Identity = 60/214 (28.04%), Postives = 96/214 (44.86%), Query Frame = 3 
Query:  318 NSCVDP-SIAGKCTIDGDGSLSMSDCGLTNDDLDDIRSCLEAAGVSTIVELLLDTNGLTALKPDVSGSSG-------------------TFDGMTSLEVLSLSANELTTLPADLFGSLTSLVSLFVDD------------------------NSDLTCLPDIPSSDMETISRSNTDIFNSVCECVPDESIFCDAGLSCQPGEIGYTCVTATPSP 827
            N C+DP S A  C+++G   + +  CG+T+DDL+D+ +CL+  G  ++  L +  N LT +   +    G                   +F  +  L+VL+L+ N LT LP DL                                      N +L C+P   + ++ET     T+I + VC C    ++ CD GL+C PGE+G+TC T+ P+P
Sbjct:  179 NPCLDPASEAYLCSVNGT-EIHLDYCGITDDDLEDVETCLDVLGRGSMTALYVRFNYLTTIPEGLFDGLGHLEKLYLNNNGLSETLSAESFQALGKLQVLNLNGNSLTALPTDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLRLNPELQCVPASAADNVET-----TEISSGVCGCSLAPAVLCDVGLACVPGELGFTCATSAPTP 386
[Close]
BLAST of Ec-28_000190.1 vs. uniprot
Match: A0A6H5KAY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY3_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.640e-8
Identity = 36/79 (45.57%), Postives = 45/79 (56.96%), Query Frame = 3 
Query:  315 VNSCVDPSIAGKCTIDGDGSLSMSDCGLTNDDLDDIRSCLEAAGVSTIVELLLDTNGLTALKPDVSGSSGTFDGMTSLE 551
            VN C+D + A +C ID DG L +  CG+T+ D DD+ SCLE AG   I  L L  N LT L        G F G+T+LE
Sbjct:  137 VNVCLDTTDADRCEIDADGQLDLYSCGITDADFDDLASCLEDAGPEAITYLSLSQNELTTLP------EGIFGGLTALE 209
[Close]
BLAST of Ec-28_000190.1 vs. uniprot
Match: D7FSS0_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS0_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 4.600e-8
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 3 
Query:  318 NSCVDPSIAGKCTIDGDGSLSMSDCGLTNDDLDDIRSCLEAAGVSTIVELLLDTNGLTALKPDVSGSSGTFDGMTSLEVLSLSANELTTLPADLF----GSLTSL 620
            NSC DP         G   + + +CG+ ++DL+D+R C E  G +++  + +++N LT L     G +G F G  SL+ L L  N + TL AD F    GSLTSL
Sbjct:   38 NSCFDPEYDLYGCEPGSTQIDLDNCGIGDEDLEDLRECFENVGRASVTYIAMNSNSLTELP---GGENGLFAGFESLKTLGLVQNNIKTLYADSFEGLGGSLTSL 139
The following BLAST results are available for this feature:
BLAST of Ec-28_000190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FIG5_ECTSI1.860e-55100.00Similar to Leucine rich repeat containing 15, part... [more]
D8LR92_ECTSI5.800e-1428.04Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A6H5KAY3_9PHAE1.640e-845.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSS0_ECTSI4.600e-837.14Hypothetical leucine rich repeat protein (Partial)... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:248910..255885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D8LR92
Length1499
Hectar predicted targeting categorysignal peptide
Gene idEc-28_000190.1
EggNOG free text desc.corticospinal neuron axon guidance through spinal cord
EggNOG OGsCOG4886@1,KOG4237@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000190Ec-28_000190Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 248910..255885 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000190.1.1Ec-28_000190.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 248910..249124 +
Ec-28_000190.1.2Ec-28_000190.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 249513..249611 +
Ec-28_000190.1.3Ec-28_000190.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 249835..249898 +
Ec-28_000190.1.4Ec-28_000190.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 250274..250363 +
Ec-28_000190.1.5Ec-28_000190.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 250767..250856 +
Ec-28_000190.1.6Ec-28_000190.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 251940..252011 +
Ec-28_000190.1.7Ec-28_000190.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 252297..252347 +
Ec-28_000190.1.8Ec-28_000190.1.8Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 252771..252823 +
Ec-28_000190.1.9Ec-28_000190.1.9Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 254230..254304 +
Ec-28_000190.1.10Ec-28_000190.1.10Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 254674..254730 +
Ec-28_000190.1.11Ec-28_000190.1.11Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 255086..255202 +
Ec-28_000190.1.12Ec-28_000190.1.12Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 255370..255885 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0001905UTR:Ec-28_000190.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 248910..249124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000190.1CDS:Ec-28_000190.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 249554..249611 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0001903UTR:Ec-28_000190.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 255462..255885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000190.1Ec-28_000190.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 249554..255461 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000190.1 ID=Ec-28_000190.1|Name=Ec-28_000190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=273bp
MRLLPCGLAAPFLFGRLAHGVNSCVDPSIAGKCTIDGDGSLSMSDCGLTN
DDLDDIRSCLEAAGVSTIVELLLDTNGLTALKPDVSGSSGTFDGMTSLEV
LSLSANELTTLPADLFGSLTSLVSLFVDDNSDLTCLPDIPSSDMETISRS
NTDIFNSVCECVPDESIFCDAGLSCQPGEIGYTCVTATPSPTPPPTTPPT
PAPVMPPSPAPTPAPLVPTPAPSSPAPTRAPTPAPSPSPIPSFSSSGRAR
ETGCIFWATTAGIFAALFVMNL*
back to top

spliced messenger RNA

>Ec-28_000190.1 ID=Ec-28_000190.1|Name=Ec-28_000190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1499bp|location=Sequence derived from alignment at chr_28:248910..255885+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GGAAAGTATGCCGAACTACTGAGCTGCCGGGGCTAGAATGCTGCTGGAGC
ATCCGCTACCTTCGAGGATTTGTGTAGAAGGATCTGGGTCGTGTGGTCGA
ACCAAAAGCCAGCTGTAACCCGCAAGAAGAGCCCACGCCCAAAGCTTGAG
CTCTGGAGGAACAAAACCATTGAGCGTTTGCCGAGTGGCAAAGTGGCCGA
GCGGCTAGAGAAGAGTCGATTCTTGGCTGCACCTCGCCCTGGGTTGGATC
CTCAAGATGCGCCTCCTCCCATGCGGGCTAGCAGCTCCGTTCCTCTTCGG
TCGTCTTGCTCACGGTGTGAATTCTTGCGTCGACCCGAGCATCGCCGGAA
AGTGTACGATCGACGGGGATGGTTCTCTGTCCATGTCCGATTGCGGGCTG
ACGAACGACGATCTGGACGACATCAGATCGTGCCTAGAAGCTGCAGGAGT
ATCAACGATCGTAGAACTGTTGCTCGACACCAATGGCCTGACAGCCCTCA
AGCCCGACGTATCAGGATCGTCGGGAACATTCGACGGCATGACTTCTCTG
GAGGTTCTTTCTCTATCGGCGAATGAGCTCACCACGTTGCCCGCTGACCT
GTTTGGAAGCCTCACCTCCCTGGTATCCTTGTTTGTCGACGATAACAGTG
ACCTAACCTGTCTCCCCGACATCCCGAGCAGCGATATGGAAACCATTTCC
AGGTCGAACACCGACATCTTCAATAGTGTGTGCGAATGTGTACCTGATGA
ATCAATTTTCTGCGACGCGGGCTTGAGCTGCCAACCGGGAGAGATTGGCT
ACACCTGCGTGACAGCGACGCCGTCCCCGACGCCTCCTCCTACCACCCCA
CCGACTCCGGCTCCCGTGATGCCACCGTCACCAGCGCCCACTCCCGCCCC
ACTAGTGCCTACGCCAGCACCAAGTAGTCCTGCTCCAACGAGGGCACCGA
CACCAGCACCATCACCATCGCCCATACCCAGCTTTTCTTCCTCGGGACGT
GCGCGCGAAACCGGCTGCATCTTCTGGGCCACCACGGCCGGCATATTCGC
CGCCCTCTTCGTGATGAACCTTTAGTCGATGGGTGTTGTATGAAATGGTT
GTGTGAAGGAAGAAAGCGTTAGATGTTGCATCAATGTTTGATTGGTTTTT
TTCCTTAGGGAGATATCTTCTCGCCCGAGGATCTGGCGTCATCCGTATCT
AGACCGACGCTTGGTTGGGGCAACAACCGGGAAAACAAACTTCGCCACGT
AGCTCGATGATTGTTGAAAGCAACGTCAAAAAGGATAGAGTTAGAGACGG
GCCGTTCTGCTGCCCCTGTGTGCCACACTTCTAGCGCTCGAACAGGGCAC
GCCCACCACCGTGAAAAAACAGTGGGGTAGGCAGCTTGTCCTTACTCGCT
TGGCTTGTACTCACCACACACTGCCGCCGTGAATCGACGCCGGTCCCTAG
AGCGCAGACCCCTCACCAAATGATCAATGACAAGATTGCGGCTTTGTGC
back to top

protein sequence of Ec-28_000190.1

>Ec-28_000190.1 ID=Ec-28_000190.1|Name=Ec-28_000190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=273bp
MRLLPCGLAAPFLFGRLAHGVNSCVDPSIAGKCTIDGDGSLSMSDCGLTN
DDLDDIRSCLEAAGVSTIVELLLDTNGLTALKPDVSGSSGTFDGMTSLEV
LSLSANELTTLPADLFGSLTSLVSLFVDDNSDLTCLPDIPSSDMETISRS
NTDIFNSVCECVPDESIFCDAGLSCQPGEIGYTCVTATPSPTPPPTTPPT
PAPVMPPSPAPTPAPLVPTPAPSSPAPTRAPTPAPSPSPIPSFSSSGRAR
ETGCIFWATTAGIFAALFVMNL*
back to top

mRNA from alignment at chr_28:248910..255885+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000190.1 ID=Ec-28_000190.1|Name=Ec-28_000190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6976bp|location=Sequence derived from alignment at chr_28:248910..255885+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GGAAAGTATGCCGAACTACTGAGCTGCCGGGGCTAGAATGCTGCTGGAGC
ATCCGCTACCTTCGAGGATTTGTGTAGAAGGATCTGGGTCGTGTGGTCGA
ACCAAAAGCCAGCTGTAACCCGCAAGAAGAGCCCACGCCCAAAGCTTGAG
CTCTGGAGGAACAAAACCATTGAGCGTTTGCCGAGTGGCAAAGTGGCCGA
GCGGCTAGAGAAGAGGTATGACACCATCGTGTTCGACAAATATTATGTAT
GATAGACACCCTGTAGTGCCTACATAATTTTTGCTGTCACAAACGACGTT
GCCCTCCTGAAGGCATCCGTCAACGCCATTCCTCCTCTCGTTTTGTTGGG
CCAACTTCTTGTAAAAAAAAAAGCGGGGATCCACCCTCGGGTTTGGTGAA
TGTAGAAGTTTCAACCTAACCGTGGGTGGCTTTGCGGTGGGCATACGTAG
GTCGCGAGAGCCTTTCTGAATACATCATGTGAGCACGTGAGAGTGCAAAG
TTACGCGCCGCTCATCAAGAGCGGAGTCTCAGATGCTCTGTTACATGCTC
TCTGTATGTGTGCTACGTTTGTTTGCTCTCCACCTTGAACGAACCTTCCT
CAGTCGATTCTTGGCTGCACCTCGCCCTGGGTTGGATCCTCAAGATGCGC
CTCCTCCCATGCGGGCTAGCAGCTCCGTTCCTCTTCGGTCGTCTTGCTCA
CGGTGAGAAACCCTCCAAATGGTTTCATGGTGTAGACTAGTACATGTAGA
CCGCGCCAAAGGGCTCAATTATTTCGATCGTATTTGAAAATAATTATGTT
CTCTCATGATCCGAGGACTGTTTGGTATGCTATGTATGGCATTTATAAAC
GTGTACTTCTCCCACGCTATGGGAATGTGATATTTGCTCGTGATCAATAT
GTGACCTGATGATTCCCACCTTCAGGTGTGAATTCTTGCGTCGACCCGAG
CATCGCCGGAAAGTGTACGATCGACGGGGATGGTTCTCTGTAAGTCTCGG
CATCAGCCTTGTCATCAGCCTTCTGACTTTCAGAGTTTTCTGTCGGTTGT
ACCGTTTATAACCACCGTCAACACCACGCCGGATCAAAAGTGACTGCCGC
ACGAAATCCTTCCGACCCACAACTAGATAATATATATCAGTCTCCTTCAG
ACGAAAACATGAAGTGGTGATATTGGTTGAAGGTCGCTAGCGAAGTACGA
AGTAGCTGCTATACCACACGCCGCCCTTTCCGTTAGGCGCTCTAATTGCT
TCATTCATCACGACAGAGCATTCGTTCAACGGACGAGTTGTGTGGCCTTT
CGATCAACACAACTGACACCGATAGCGTTTCGTAATCCTTGAACATTTGA
CGTGATCCCTACAGGTCCATGTCCGATTGCGGGCTGACGAACGACGATCT
GGACGACATCAGATCGTGCCTAGAAGCTGCAGGAGTATCAACGATCGTAG
AACTGTGAGTCACTCGGCCCCGGCGGTTTTGTGAAAGATGTTAACAGCTA
TCATGCCAAAAAACCCATAACAATGATTATGCCAAGGAAGAGGTGTGTCG
GGAGCTGTGTCGGGAGCTCCGTCGTAGAAGCTTCACCTCGACACCCGATA
TGAACATTGAGATTTACGCGAGGGAAAGTGTTTACACTCGTCGCGCCATC
CGTCACTTCCCTCTGATTGGTTTGGGGATTCATCGGGAACACATGGCTGC
TGATGATTTCGCTGGAGGTTCAGGACACCCCAGCGCTTCCAACCCGTACC
GTTCACCACGTAGCTCGGTATATTTGTACCCACATCCCGAAAAATGCCAA
CATATGTATTGTTTGTTTCCCTACTATTGCTGCCGCTGCTGTAAAATTGT
TGGATAGGTTGCTCGACACCAATGGCCTGACAGCCCTCAAGCCCGACGTA
TCAGGATCGTCGGGAACATTCGACGGCATGACTTCTCTGGAGGTTCTGTA
AGTTATAGCCCGTGTAGACCTACTTTAGGCTAACTCTCAGAGTGAGACAG
CGTGACAAAGGCAGTATACATGTGAAAACGTGAGTAAGTTGAGCACCCTC
GTGGCCAAGAAAGCCCTTGAACAGTCAACGATCGATCGTGTTAGTACACG
TCTCCCCTGGAAGGAGAGCTATCCATCTGTGGCAGTATCTGCTGACGGAG
TGGTGATTTTCGATGGCACCGACTAGAGAACGACAGCAGTTGGCGTTTCT
CAGAAAACCTTTCTTTCTCAAATATTTTTCGATTTATTTTTCTTGCAATT
TTGTCGACGCTAGACAAATTCGGACTCAAATATTCTCCAGACTAAGGGAA
CATATTTTGAGTTAAGCCATCGTTCTGTGGATCGTTCCTGACAGTCTCGC
CAGAACCCACAACAAGGAAAATACTTTTTCCGGACTCAGAGCGGACGAAG
GCTCGTTTTGTGGAAAATTTTCAGATTTTTTCGATAAAACAACTTCTTCT
AAGCAACACACCAGACACCACACACACAGTCTGCTCAAAGCACATATCCA
CCCCCGATCAAAGAGAAACTCAACGCCCAGCGAAAAAGGTCCTGGCGCGC
GAAACATGAAGAGAGGGAGGCTGCACGCTCAGGAGGTTAGGTTCGTGACC
GGAACCGGGATCGGGACCTTGACCGGGACCAAGACCGGGACCGGGACCAG
GACCAGGACCGGGACCGGGAACAGGACTGGAACCGGGACCGGGACCTTGA
CCGGGACCAGGACCGTCACCGTCACCGGGACCGTCACTGTAACCGGGACC
GGGGTCGGGACCATGAAAATTCAGATACACTCGTCGCTATGAAAAACGAG
ATACATTCTTACTCTTTTTACAATATCAGATGCACAATGAATCAATTAGG
GAATGCGACGGCCAGCGGACAGAGTAGATCAGATTGTCGGTACACCATCT
CTTCTTTCATCATCCCAGGCCAAGAACCTACAGCCAGCTCTAAGTATGCG
TCGCCTTCGAACCCGCCCCACGTGATGCTTAATTTCACGACGACCCCGCT
GCTGCTGCACGGCCCCTTCCTGTGGTTCAGTTCTCTATCGGCGAATGAGC
TCACCACGTTGCCCGCTGACCTGTTTGGAAGCCTCACCTCCCTGGTATCC
TTGTGAGTGAGAAAAAAAATAGTTTTTTTGTGCGAGGGGCACCGTTGATG
GGTTCATTTGCAACAACCTAAATAATACAGCATGATTGTTCGGGTGAACA
ACGAAGATCATGGGAGGAGAACAAAGAGCATAACACATTTACACACGAAC
TACGTATTTCTTCCAGCATCCGTTGAAAGTAGAATTATCAACCGGCGGAG
GAGTAACTAGGGTTGACGCTTCTTCGGCTCAACACCACGAAAACGTCACG
GACTCCTTCCGCTGCTTGGCATTCACCCCTTTGTCAGGTTTGTCGACGAT
AACAGTGACCTAACCTGTCTCCCCGACATCCCGAGCAGGTAACGGTTTTG
GAGCGCACTCGTTTCCGGATAGAGTAGTAGTTCTCAAGGCCCGACAAATG
TGTATGGTCAAGCCGACCGGTTCATGTGCTCGGCGTGTCCGATACGGTGT
CATGTACAGCGCCTAAAAAACAACAGCAAGTTGTCGTCAACGCCGACGGT
GTACAGACAACCAATCGGTTGTTGTTGGTCGACAAGAATGTAGTAGAACG
TTGACAGAAAACAACGATCGTAGCTCAGCAAACCCTTCGCCCCCCTCCTC
AAGCAGTTGGTTCGACCACCCGTCCGCCCCGGCACGGGTCAAAAGTGGAT
GTCCGATTGCTCCTCGTCGCGGACGCGCAAGGCCGAAAGACACACGTAAA
TTAACCCTCCTATCTGTAATGTTCCCGTCATTCCTGCAATGCCTTTCGTG
GTCTGGTGCAGCGATATGGAAACCATTTCCAGGTCGAACACCGACATCTT
CAATAGTGTGTGCGGTGAGTGCCTGGCGCAAGTAAAGATGCGACGAATCG
ATGATGATACCACATCCTCGCGTAGCGTACAAGCGACGGGTGGCTATGGA
TCTCGGGTACTTTTTCTCCTGACGCATTTATTTGCTGAATCCACGTTGAA
ACGAAGCATTCGTTCTCCTATGGGGGGGGGTGTACCTATAGTCGTGCATG
CCGTAGTCGTTAGACCATTGACCTCGCATCCCTACAAAGCCGGGACGGAG
CACGCCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGCGAAGCG
CCGTAAGGTATTCGGCGAGTCGCATGAAGGGTGAGCTGCATCCTGCTAAG
GGTGTTCGGCATCTTGTGCTTACTTCCTTGCGTACGGATGACAGCTACGT
ATGACTCAATTTATTTTCTGGTGCTTTGACTTCCAGAGACAGTTCTAAGC
ACTGTGTAACCGCCTCGAGGAAGCTTGACCATTTTAACACAACGTGGTGC
GATCATCCCCCGTTGCGCGGAGTGAGGGTTCTCCACCCCGCACAACATGA
TCTACTCAACGACCACAATGGTTACCGCCAAAAAAAAAACGAGGTAAAAA
TAAACGGTAACAACCTGGTTGCCGAGTTCACGAAGTGAATTGGCTTGTTT
TACAAGGTCGTTGCCAAGCGACGAAAATCCAACCCCGATGGCAAACACCG
AGTGGGGGGCTTCTCCTATGGGAGGTGTTTTGCGTGGTATTCCTTCGGAG
CATTTTCGTGTTTTTCACAAACTCTCAGTCATGTAGTCCCCAAGCTTACC
CCCTCACGAACTCGAAGCGGGAACTAGGCCCGACTCTGAAAATTACCCTG
CGATTGAAAACCACGTCTATCAGCTCGTGCGCAGCCTAGAGGCAGTTTCT
GTCGTGGAGAATGAATCCGAAATTTTGGTGATGATCTGGTATGCGCTCGA
TCCACATCCTTGCCAAGAAGCGCGAGAGGAAGTAATTCGTGTTTCTCAAA
TCCATCAAGCGTAGAAACTTCTTGATGAGTCATTAGTTGAGAGTGTGACG
TTGCGCGTTACAACCGATTCTGAAGATCTCAACACGGTCGATATCTTCGC
TATATCTAGGATTTTCCGCTGCTGTCTGGTAGCACCCGAGTGGGTACACA
CGATATAGGGTGACCTACCTCGGTTGGTTTCCAGCAGGCCTCATGTGTAC
TCACGGTGTTTTAGATTCCTACGCATGGATGATGGGCGAGGACTCTGAGC
AATCAACTCAGGTCGTCTCCTGTTTGGCGGCGTCTGGTGCTGCACACGCA
ACACGCGGACCTAGCGATTCCTCCGTTGCGGGGTCTAGCGAGCGACCGCT
GCCCTAATTTTGACAACGTCCATGCCGTCGCCTTTCGCCGTACGTACGAC
TACCGACCACCGCCGGCCAGAATGTGTACCTGATGAATCAATTTTCTGCG
ACGCGGGCTTGAGCTGCCAACCGGGAGAGATTGGCTACACCTGCGGTGAG
AAACACCCTTTTCGTGCGAGTTTTGGTAGCCCCTCGCCCTCGACGTCTTA
GGACGGCACGCGCGACGTTTACCAACACTGAACTCATTGATCTTCGGTGC
AACAAGTAAATCTGGATGGCATGCACCGTAGTTCCTAGCATACACACACG
TGGTAACCAAAAGAAAACTACTCCGACACTCACGCGTTATATTGCTTGGC
GTAGAGCAATTTTTTGCAGTGAATTCCCCCGTGAACTCCGACAGAGACCG
TGTCATCCATCCATGTGTGGGAAACAGCGACAACAACATAAATCTATTTT
TTTGCTCGTGTTTGCTGTGGCGGCAACCGGCTTGCACTCTACTGTAACTC
GTTGTTCGGCCTAGTGACAGCGACGCCGTCCCCGACGCCTCCTCCTACCA
CCCCACCGACTCCGGCTCCCGGTGAGTCCGTCAGATAGTTGCCTGTGGCC
GATGGATGTTGTAATTTTGATATGCCGACACTCTCTACGATGTTGCTACA
AACATACACCTCGCTTATTTTGGCACGGTGACGAAACGCACCCATCCGAG
GCAAGCAGCAGTACCCTCTCTCATTTATACCCCGCCACCAAGTCAGCTTC
TCGAACTACAAACCGGCGACAAATGCCACTGAAACGAGAACGGAGTGTGA
TCAGTGTGTGTCCACCTCTCCGACCCCCCCCCCAACTTGCTCCACCCACC
ACCACCCAGTATGTTGCCCTGCTTAGCCGCCGTTTTTTCCTCGACCCCCA
ACCCAATCGTGCACGGTGTGCCGCAGTGATGCCACCGTCACCAGCGCCCA
CTCCCGCCCCACTAGTGCCTACGCCAGCACCAAGTAGTCCTGCTCCAACG
AGGGCACCGACACCAGCACCATCACCATCGCCCATACCCAGCTGTGAGTC
ATCGAGATACATTTTACGTTTCCGGTTTAGCCTAAGGGTTAGCCTGTACC
ACATCATCATCGTGTCCGGGACAGAACGAAGCAACGACCTCCTGACCCTC
TCGCACCCCTCTGCCCTTGCTGCGCTCATGTGTGTGTATCGCGTCACACG
GTATGCAAAGTTTCTTCCTCGGGACGTGCGCGCGAAACCGGCTGCATCTT
CTGGGCCACCACGGCCGGCATATTCGCCGCCCTCTTCGTGATGAACCTTT
AGTCGATGGGTGTTGTATGAAATGGTTGTGTGAAGGAAGAAAGCGTTAGA
TGTTGCATCAATGTTTGATTGGTTTTTTTCCTTAGGGAGATATCTTCTCG
CCCGAGGATCTGGCGTCATCCGTATCTAGACCGACGCTTGGTTGGGGCAA
CAACCGGGAAAACAAACTTCGCCACGTAGCTCGATGATTGTTGAAAGCAA
CGTCAAAAAGGATAGAGTTAGAGACGGGCCGTTCTGCTGCCCCTGTGTGC
CACACTTCTAGCGCTCGAACAGGGCACGCCCACCACCGTGAAAAAACAGT
GGGGTAGGCAGCTTGTCCTTACTCGCTTGGCTTGTACTCACCACACACTG
CCGCCGTGAATCGACGCCGGTCCCTAGAGCGCAGACCCCTCACCAAATGA
TCAATGACAAGATTGCGGCTTTGTGC
back to top

Coding sequence (CDS) from alignment at chr_28:248910..255885+

>Ec-28_000190.1 ID=Ec-28_000190.1|Name=Ec-28_000190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=819bp|location=Sequence derived from alignment at chr_28:248910..255885+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGCCTCCTCCCATGCGGGCTAGCAGCTCCGTTCCTCTTCGGTCGTCT
TGCTCACGGTGTGAATTCTTGCGTCGACCCGAGCATCGCCGGAAAGTGTA
CGATCGACGGGGATGGTTCTCTGTCCATGTCCGATTGCGGGCTGACGAAC
GACGATCTGGACGACATCAGATCGTGCCTAGAAGCTGCAGGAGTATCAAC
GATCGTAGAACTGTTGCTCGACACCAATGGCCTGACAGCCCTCAAGCCCG
ACGTATCAGGATCGTCGGGAACATTCGACGGCATGACTTCTCTGGAGGTT
CTTTCTCTATCGGCGAATGAGCTCACCACGTTGCCCGCTGACCTGTTTGG
AAGCCTCACCTCCCTGGTATCCTTGTTTGTCGACGATAACAGTGACCTAA
CCTGTCTCCCCGACATCCCGAGCAGCGATATGGAAACCATTTCCAGGTCG
AACACCGACATCTTCAATAGTGTGTGCGAATGTGTACCTGATGAATCAAT
TTTCTGCGACGCGGGCTTGAGCTGCCAACCGGGAGAGATTGGCTACACCT
GCGTGACAGCGACGCCGTCCCCGACGCCTCCTCCTACCACCCCACCGACT
CCGGCTCCCGTGATGCCACCGTCACCAGCGCCCACTCCCGCCCCACTAGT
GCCTACGCCAGCACCAAGTAGTCCTGCTCCAACGAGGGCACCGACACCAG
CACCATCACCATCGCCCATACCCAGCTTTTCTTCCTCGGGACGTGCGCGC
GAAACCGGCTGCATCTTCTGGGCCACCACGGCCGGCATATTCGCCGCCCT
CTTCGTGATGAACCTTTAG
back to top
Synonyms
The feature 'Ec-28_000190.1' has the following synonyms
Synonym
Esi0120_0039
Esi_0120_0039