Ec-28_000030.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000030.1
Unique NameEc-28_000030.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length301
Homology
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BLAST of Ec-28_000030.1 vs. uniprot
Match: D7FIE9_ECTSI (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE9_ECTSI)

HSP 1 Score: 431 bits (1107), Expect = 4.220e-145
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 3 
Query:  318 MTSENNSSSSTKRVVAGAVSASGYDVTRRKKGTAQLARERALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYETIDPDHVWETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKAAHGEGQVPSHGIAAGFVDMLSRHLRIRTKNKGGKEGAEGEEEPSARPTVA 947
            MTSENNSSSSTKRVVAGAVSASGYDVTRRKKGTAQLARERALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYETIDPDHVWETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKAAHGEGQVPSHGIAAGFVDMLSRHLRIRTKNKGGKEGAEGEEEPSARPTVA
Sbjct:    1 MTSENNSSSSTKRVVAGAVSASGYDVTRRKKGTAQLARERALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYETIDPDHVWETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKAAHGEGQVPSHGIAAGFVDMLSRHLRIRTKNKGGKEGAEGEEEPSARPTVA 210
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BLAST of Ec-28_000030.1 vs. uniprot
Match: A0A6H5JXE9_9PHAE (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE9_9PHAE)

HSP 1 Score: 362 bits (929), Expect = 2.440e-118
Identity = 177/196 (90.31%), Postives = 186/196 (94.90%), Query Frame = 3 
Query:  318 MTSENNSSSSTKRVVAGAVSASGYDVTRRKKGTAQLARERALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYETIDPDHVWETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKAAHGEGQVPSHGIAAGFVDMLSRHLRIRTKNKGGKEG 905
            M SEN SSSST+ VVAG VSASGYDVTRRKK TAQLARER+LS+KQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTF+CAVCDLPAYSSSSKFNSGTGWPSFYET+DPDHVWETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKAAH + +VPS GI  GFVDMLSRHLR+RTKNKGG+EG
Sbjct:    1 MASEN-SSSSTEHVVAGTVSASGYDVTRRKKSTAQLARERSLSVKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFDCAVCDLPAYSSSSKFNSGTGWPSFYETVDPDHVWETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKAAHAQDRVPSGGI--GFVDMLSRHLRMRTKNKGGREG 193
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BLAST of Ec-28_000030.1 vs. uniprot
Match: B4X305_9GAMM (Peptide methionine sulfoxide reductase MsrB n=5 Tax=unclassified Alcanivorax TaxID=2638842 RepID=B4X305_9GAMM)

HSP 1 Score: 160 bits (405), Expect = 1.640e-42
Identity = 79/144 (54.86%), Postives = 103/144 (71.53%), Query Frame = 3 
Query:  369 AVSASGYDVTRRKKGTAQLARERALSIKQRYVV-SGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYETIDPDHVWETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKA 797
            A+SASG+D+T   +   Q AR R+LS ++R ++ + GTEPPF G   +      K  GT++C +CDLP ++SS+KF SGTGWPSFYE  DP H+ E  D S GMVR E++CARC  HQGHVF DGP PTG+RYC+N+AS+ FKA
Sbjct:    4 ALSASGFDLTPLSEEEKQ-ARARSLSEEERRILLNQGTEPPFCGGLLDN-----KDDGTYHCKLCDLPLFTSSAKFESGTGWPSFYEPFDPQHIRELHDSSHGMVRVEIRCARCDGHQGHVFPDGPPPTGQRYCLNSASMVFKA 141
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BLAST of Ec-28_000030.1 vs. uniprot
Match: Q0VPB9_ALCBS (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2) TaxID=393595 RepID=Q0VPB9_ALCBS)

HSP 1 Score: 160 bits (404), Expect = 2.120e-42
Identity = 76/144 (52.78%), Postives = 106/144 (73.61%), Query Frame = 3 
Query:  369 AVSASGYDVTRRKKGTAQLARERALSIKQRYVV-SGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYETIDPDHVWETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKA 797
            A+SASG+D+T   +   Q AR + L+ ++R+++ + GTEPPF G   +      K  GT++C +CDLP ++S +KF SGTGWPSFY+  DP+H+ E +D S GM+R E++CARC +HQGHVF DGP PTG+RYC+N+ASLTFKA
Sbjct:    4 ALSASGFDLTPLSEEEKQ-ARAQTLTEEERHILLNQGTEPPFCGGLLDN-----KDAGTYHCKLCDLPLFASDAKFESGTGWPSFYQPYDPEHIRELSDRSHGMLRVEIRCARCDSHQGHVFPDGPPPTGQRYCLNSASLTFKA 141
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BLAST of Ec-28_000030.1 vs. uniprot
Match: A0A3N5ZL52_9BACT (Peptide methionine sulfoxide reductase MsrB n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5ZL52_9BACT)

HSP 1 Score: 156 bits (394), Expect = 7.940e-41
Identity = 78/147 (53.06%), Postives = 95/147 (64.63%), Query Frame = 3 
Query:  375 SASGYDVTRRKKGTAQLARERALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYETIDPDHVWETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKAAHGEGQ 815
            SASGYD+TR    T +         ++R V++ GTEPPF G   +      KR GT+ C +C LP + SSSKFNSGTGWPSF +  DP+H+ E  D S GM R EV+CARC  H GHVF DGPRPTG RYCVN+AS+ F    GEG+
Sbjct:   10 SASGYDLTRPDAETIERLASGLTPEERRVVLNQGTEPPFCGNLLDN-----KRDGTYACRLCGLPLFRSSSKFNSGTGWPSFQQPFDPEHIRELVDGSHGMTRTEVRCARCDGHLGHVFPDGPRPTGLRYCVNSASVEF---FGEGE 148
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BLAST of Ec-28_000030.1 vs. uniprot
Match: UPI001FF4BA14 (peptide-methionine (R)-S-oxide reductase MsrB n=1 Tax=Alcanivorax sp. S6407 TaxID=2926424 RepID=UPI001FF4BA14)

HSP 1 Score: 152 bits (383), Expect = 1.800e-39
Identity = 72/143 (50.35%), Postives = 91/143 (63.64%), Query Frame = 3 
Query:  369 AVSASGYDVTRRKKGTAQLARERALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYETIDPDHVWETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKA 797
            A SASGYD+T   +   Q         ++R +++ GTEPPF G   +      K  G ++C +CDLP +SS SKF SGTGWPSFY   D +H+ E  D S GMVR E++CARC  H GHVF DGP PTG RYC+N+AS+ FKA
Sbjct:    4 ATSASGYDLTPLSEADKQQKAANLTEEERRILLNQGTEPPFCGGLLDN-----KDSGVYHCKLCDLPLFSSDSKFESGTGWPSFYAPFDSEHIRELRDTSHGMVRVEIRCARCDGHLGHVFPDGPAPTGLRYCLNSASMVFKA 141
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BLAST of Ec-28_000030.1 vs. uniprot
Match: A0A2E9TLR4_9GAMM (Peptide methionine sulfoxide reductase MsrB n=6 Tax=Alcanivorax TaxID=59753 RepID=A0A2E9TLR4_9GAMM)

HSP 1 Score: 151 bits (382), Expect = 2.550e-39
Identity = 69/142 (48.59%), Postives = 95/142 (66.90%), Query Frame = 3 
Query:  375 SASGYDVTRRKKGTAQLARERALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYETIDPDHVWETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKAA 800
            SASG+D+T       Q   E   + ++R +++ GTEPPF G   +      K  G ++C +C+LP +++S+KF SGTGWPSFY+  DP+H+ E  D S GMVR E++CARC  H GHVF DGP PTG RYC+N+AS+ FKA+
Sbjct:    6 SASGHDLTPLSDTEKQQRAESLTAEERRILLNQGTEPPFCGGLLDN-----KENGVYHCKLCELPLFAASAKFESGTGWPSFYQPFDPEHIRELRDTSHGMVRVEIRCARCDGHLGHVFPDGPPPTGLRYCLNSASMVFKAS 142
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BLAST of Ec-28_000030.1 vs. uniprot
Match: A0A095SP60_9GAMM (Peptide methionine sulfoxide reductase MsrB n=5 Tax=Alcanivoracaceae TaxID=224372 RepID=A0A095SP60_9GAMM)

HSP 1 Score: 150 bits (380), Expect = 4.410e-39
Identity = 71/143 (49.65%), Postives = 93/143 (65.03%), Query Frame = 3 
Query:  369 AVSASGYDVTRRKKGTAQLARERALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYETIDPDHVWETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKA 797
            A S+SGYD+T       Q         ++R +++ GTEPPF G   +      K  G ++C +CDLP ++S+SKF SGTGWPSFYE  D  H+ E  D S GMVR E++CARC  H GHVF DGP PTG+RYC+N+AS+TFK+
Sbjct:    2 ATSSSGYDLTPLSDAEKQQNAANLSEEERRILLNQGTEPPFCGGLLDN-----KEDGIYHCKLCDLPLFNSTSKFESGTGWPSFYEPFDSAHIRELRDTSHGMVRVEIRCARCDGHLGHVFPDGPPPTGQRYCLNSASMTFKS 139
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BLAST of Ec-28_000030.1 vs. uniprot
Match: A0A845MPY8_9GAMM (Peptide methionine sulfoxide reductase MsrB n=2 Tax=Alcanivorax TaxID=59753 RepID=A0A845MPY8_9GAMM)

HSP 1 Score: 150 bits (378), Expect = 8.890e-39
Identity = 71/143 (49.65%), Postives = 91/143 (63.64%), Query Frame = 3 
Query:  369 AVSASGYDVTRRKKGTAQLARERALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYETIDPDHVWETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKA 797
            A SASGYD+T       Q         ++R +++ GTEPPF G   +      K+ G ++C +CDLP +SS SKF SGTGWPSFY   D  H+ E  D S GM+R E++CARC  H GHVF DGP PTG RYC+N+AS+TFK+
Sbjct:    4 AKSASGYDLTPLTDSEKQQNAANLTEEERRILLNQGTEPPFCGGLLDN-----KQDGVYHCKLCDLPLFSSDSKFESGTGWPSFYAPFDEAHIHEIRDTSHGMIRTEIRCARCDGHLGHVFPDGPAPTGLRYCLNSASMTFKS 141
[Close]
BLAST of Ec-28_000030.1 vs. uniprot
Match: A0A7G2S6Q2_9GAMM (Peptide methionine sulfoxide reductase MsrB n=1 Tax=Alcanivorax sp. TaxID=1872427 RepID=A0A7G2S6Q2_9GAMM)

HSP 1 Score: 150 bits (378), Expect = 9.460e-39
Identity = 68/142 (47.89%), Postives = 93/142 (65.49%), Query Frame = 3 
Query:  375 SASGYDVTRRKKGTAQLARERALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYETIDPDHVWETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKAA 800
            SASG+D+T       Q   E     ++R +++ GTEPPF G   +      +  G ++C +CDLP +S+++KF SGTGWPSFY+  DP+H+ E  D S GM R E++CARC  H GHVF DGP PTG RYC+N+AS+ FKA+
Sbjct:    6 SASGHDLTPLSDAEKQQRAEHLTDEEKRILLNQGTEPPFCGGLLDN-----REDGAYHCKLCDLPLFSANAKFESGTGWPSFYQPFDPEHIRELHDTSHGMTRVEIRCARCDGHLGHVFPDGPPPTGLRYCLNSASMVFKAS 142
The following BLAST results are available for this feature:
BLAST of Ec-28_000030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIE9_ECTSI4.220e-145100.00Peptide-methionine (R)-S-oxide reductase n=1 Tax=E... [more]
A0A6H5JXE9_9PHAE2.440e-11890.31Peptide-methionine (R)-S-oxide reductase n=1 Tax=E... [more]
B4X305_9GAMM1.640e-4254.86Peptide methionine sulfoxide reductase MsrB n=5 Ta... [more]
Q0VPB9_ALCBS2.120e-4252.78Peptide-methionine (R)-S-oxide reductase n=1 Tax=A... [more]
A0A3N5ZL52_9BACT7.940e-4153.06Peptide methionine sulfoxide reductase MsrB n=1 Ta... [more]
UPI001FF4BA141.800e-3950.35peptide-methionine (R)-S-oxide reductase MsrB n=1 ... [more]
A0A2E9TLR4_9GAMM2.550e-3948.59Peptide methionine sulfoxide reductase MsrB n=6 Ta... [more]
A0A095SP60_9GAMM4.410e-3949.65Peptide methionine sulfoxide reductase MsrB n=5 Ta... [more]
A0A845MPY8_9GAMM8.890e-3949.65Peptide methionine sulfoxide reductase MsrB n=2 Ta... [more]
A0A7G2S6Q2_9GAMM9.460e-3947.89Peptide methionine sulfoxide reductase MsrB n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:10517..15560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score429.5
Seed ortholog evalue1.3e-117
Seed eggNOG ortholog2880.D7FIE9
Length2132
KEGG koko:K07305
Hectar predicted targeting categoryother localisation
Gene idEc-28_000030.1
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0030091,GO:0033554,GO:0033743,GO:0034599,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0097237,GO:0098754,GO:1901564,GO:1990748
EggNOG free text desc.peptide-methionine (R)-S-oxide reductase activity
EggNOG OGsCOG0229@1,KOG0856@2759
EC1.8.4.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000030Ec-28_000030Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 10406..15775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000030.1Ec-28_000030.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 10565..14379 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000030.1.1Ec-28_000030.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 10517..10948 +
Ec-28_000030.1.2Ec-28_000030.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 11698..11892 +
Ec-28_000030.1.3Ec-28_000030.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 12368..12501 +
Ec-28_000030.1.4Ec-28_000030.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 14190..15560 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0000305UTR:Ec-28_000030.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 10517..10564 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000030.1CDS:Ec-28_000030.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 10565..10948 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0000303UTR:Ec-28_000030.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 14380..15560 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000030.1 ID=Ec-28_000030.1|Name=Ec-28_000030.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=301bp
MRCLGAPQLTAVTKCVKQTPVLYRLDSPVGKKCYRGPRGRGVEDTLHSPE
TGGIDKNRCCSWLRRSQSSQSSNATSPSAGHKPGTRKATGMTSENNSSSS
TKRVVAGAVSASGYDVTRRKKGTAQLARERALSIKQRYVVSGGTEPPFSG
RFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYETIDPDHV
WETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKA
AHGEGQVPSHGIAAGFVDMLSRHLRIRTKNKGGKEGAEGEEEPSARPTVA
*
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spliced messenger RNA

>Ec-28_000030.1 ID=Ec-28_000030.1|Name=Ec-28_000030.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2132bp|location=Sequence derived from alignment at chr_28:10517..15560+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TTCAACGGCATATCCAACCTGCTAATAGTGTAGCCGCTATTCCTCATCAT
GCGGTGTCTTGGTGCTCCGCAACTGACTGCTGTAACGAAGTGCGTAAAAC
AAACCCCGGTGTTGTATCGTCTCGACAGTCCCGTCGGTAAGAAGTGTTAC
CGCGGTCCGCGGGGTCGTGGGGTTGAAGACACATTGCATTCACCCGAGAC
CGGAGGCATCGACAAAAACCGCTGCTGCTCCTGGCTGCGGCGCTCACAAA
GCTCACAATCAAGCAACGCGACATCTCCATCTGCAGGCCACAAACCAGGA
ACACGGAAAGCTACAGGCATGACCTCGGAGAACAACAGCAGCAGTAGCAC
GAAGCGCGTCGTCGCTGGTGCCGTGTCGGCGTCCGGTTACGATGTCACAA
GGAGGAAGAAGGGCACCGCACAGCTTGCTAGGGAGCGAGCGCTGAGCATA
AAACAACGCTACGTCGTCAGCGGCGGGACCGAACCTCCCTTCTCGGGCCG
CTTCTCGAACGGGGTCAGGTACAGCACCAAGAGGCGGGGCACCTTCAACT
GCGCCGTGTGTGACCTCCCGGCCTACTCGTCTTCTTCCAAGTTCAACAGC
GGCACGGGATGGCCCAGTTTCTACGAGACCATCGACCCCGATCACGTGTG
GGAGACCACAGACCTCTCGGCGGGCATGGTGCGGAAGGAGGTCAAGTGCG
CCCGGTGCCATGCTCACCAGGGGCACGTGTTCAACGACGGGCCTCGACCA
ACAGGAAAGAGGTACTGCGTCAACGCAGCATCCTTGACGTTCAAGGCGGC
TCACGGTGAAGGTCAGGTGCCGTCGCACGGCATCGCCGCGGGGTTCGTAG
ATATGTTGTCGAGGCACCTCCGCATCCGCACGAAGAACAAGGGCGGCAAG
GAGGGTGCGGAAGGGGAGGAAGAGCCGTCAGCCCGGCCGACGGTCGCGTG
ATGTGATATGATGTGATGTGATGTGATATGATATGATATGATGTTTTGTG
GTTTTAGGCTCACCTCGCCTTTTCAAATCGCGTCGGGTAGGGTGGAGTGT
GAATGCGTTATTTGTTATTTGTAAGCAGTCAAGAAGTGCGTTATTTGTAC
TTGGAAGTATTTGGTGTGCGTGTGCTGCTCCGGAAATGTGACGGCCCATT
CGGGGGTTCTCTTGTGTTGTTCTTTCACCGGTGTTTGGTACGCATGGGGT
CGTCAAAGACTGCGCCGCGAAAAGCCCAAGGGTATTGAACCTCTTTGCTC
CACCGCTTGATGGTTTCGGCGCCAAAGAAATTTTGTGTATACGTATTTAT
GCAAGGTGGGTTTTTCGGGCATCGGCAGGGAAGGTCCTTCGCATAGATGT
GAGGCCCTCTGAAGAAATAGAAAGCGTGTGTCGGTATTGCGTGTGATGTC
GAAGCAAGCACCGGTACACTGCTGTTCGGCTGTGTCGAGAGAGTAGCTAC
TGTACCCCGTTGGGATAGTTGGGGGCGCACCTTGGGGTGTACTGAACTTC
GAGCGTAAAAGAACACTGTTCAAGAATTAGTTGTAGTCTGTTTGTGGTTT
CCCCCCTTCATCTGCCTGAACATGGGGCGGAACGCACCCTTGTTTTGTGT
TGAACATGATGAGTCGGCCGTTGGGATGTTTGCTATGTCAACTGGTGTTG
TGCTGGGGTGACAGGTTGAAGGGTGTCTTGTGTCCTTCCTACCTTGAGTG
AGAATATGATGTGCATGTATTGTGAAGGTGGTGTCGTAAAGTCATACGTT
ATTGAAACGTTGAAGGACCGCTGGAATTGGCGTTATAGATCCGCAGATGG
TTTTGGTGATTTTTGGCGCCATTTGTCGATCGAACGGTGCGGACCTCTGC
GCGGGTCGCACAAATTGTCGATGCTTACGGAGCAGCTAGCTGTTGCGAAG
AATGTGACATGAATACCGTGTTAGTTGTTTGTTGTGTAGGTGTTGCCAGG
GTGGTGGAACTGATGACACTGCTTTGTTGTTGGGGATGCTTTCTTTCGTA
GCGCGAGAGTAGGAGGAGTATGGCGACGTTTCGTAGTACTTGTCTACATA
CTTTAGCCTGAAAAAAATCGAGACTGGAACTCATTTACTCATCATACCGA
GCACGTTATTGATATGTGCCGCGCGGTAAAAG
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protein sequence of Ec-28_000030.1

>Ec-28_000030.1 ID=Ec-28_000030.1|Name=Ec-28_000030.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=301bp
MRCLGAPQLTAVTKCVKQTPVLYRLDSPVGKKCYRGPRGRGVEDTLHSPE
TGGIDKNRCCSWLRRSQSSQSSNATSPSAGHKPGTRKATGMTSENNSSSS
TKRVVAGAVSASGYDVTRRKKGTAQLARERALSIKQRYVVSGGTEPPFSG
RFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYETIDPDHV
WETTDLSAGMVRKEVKCARCHAHQGHVFNDGPRPTGKRYCVNAASLTFKA
AHGEGQVPSHGIAAGFVDMLSRHLRIRTKNKGGKEGAEGEEEPSARPTVA
*
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mRNA from alignment at chr_28:10517..15560+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000030.1 ID=Ec-28_000030.1|Name=Ec-28_000030.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5044bp|location=Sequence derived from alignment at chr_28:10517..15560+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TTCAACGGCATATCCAACCTGCTAATAGTGTAGCCGCTATTCCTCATCAT
GCGGTGTCTTGGTGCTCCGCAACTGACTGCTGTAACGAAGTGCGTAAAAC
AAACCCCGGTGTTGTATCGTCTCGACAGTCCCGTCGGTAAGAAGTGTTAC
CGCGGTCCGCGGGGTCGTGGGGTTGAAGACACATTGCATTCACCCGAGAC
CGGAGGCATCGACAAAAACCGCTGCTGCTCCTGGCTGCGGCGCTCACAAA
GCTCACAATCAAGCAACGCGACATCTCCATCTGCAGGCCACAAACCAGGA
ACACGGAAAGCTACAGGCATGACCTCGGAGAACAACAGCAGCAGTAGCAC
GAAGCGCGTCGTCGCTGGTGCCGTGTCGGCGTCCGGTTACGATGTCACAA
GGAGGAAGAAGGGCACCGCACAGCTTGCTAGGGTAAGCCTGAGAGACGGT
GCTTTGTGAATCGGCGGTGTTAGGCCGTGCTGCCGAGCAGGCCACGAGCG
AAAGGTTGTACAGCAGCAGCGGTGTGCCGTGGTGCCCAGCAAAGCAGTAC
TGCGCGATGAGTCGCCGGCGGCAGCAGTGGTGTAAACAGAGCTGGGTCTA
CAGCTGTAGGTATCCTTGGTACACCCAGCAGTCAAAAATGCCCCTGCCTG
CAGAAGACCTGATGGTGACTGGTGTAGAGCTGTCGACAGACTGCTGCACA
CGGGCGACGGGTGTTTTACCGTAAAGCGTCTAAATTTACCGCAACAGCAG
TAACCCCGAGGGACGAGCAGTTCTTGTTGTGTGCGATTTTATGGCAAGAA
CGCGCCGTGAACCATCATTCTTGTTTCTCTATTTGTTCACCCTAACTTGG
GCCCCTCCCTAGCGTACGCGTCGTGACGGGCATGATGGCACATGCACGAG
GCAAACAAACCGAACCCGGCCTATTGTTGTCAATCTCAGGTCCCTCCAAG
AAGAGCAATGTTGGTCTGTGAGGTTGGTCTAGTAATTCTAAGTATGCGTT
TTTAGGAGCATTGCGATCTGCTGCTCAAATGGTCTGTGAGTTGTTGGTTG
GTTGGTTCCTTCAGAAGATGTTGTTCCGCGATCTCCGCCGGGCCTCTATA
AGTTGTTGGTGTTGACCATGGACGTTGTCGTTCTCCAGATATCAATTTCC
ACGCCGGGACTGTTGTATGTACCTGCCTTAGGAGCGAGCGCTGAGCATAA
AACAACGCTACGTCGTCAGCGGCGGGACCGAACCTCCCTTCTCGGGCCGC
TTCTCGAACGGGGTCAGGTACAGCACCAAGAGGCGGGGCACCTTCAACTG
CGCCGTGTGTGACCTCCCGGCCTACTCGTCTTCTTCCAAGTTCAACAGCG
GCACGGGATGGCCCAGTTTCTACGAGGTGAGGGAGGGAAGCCGCTCCCTT
GGAGGCGCGCGAGACCGACCCCTTCGTGCGAATAATATGCATATGTGTGG
TAAATACAAGGCTTTGACGAGATGCACATATGTATAGCAACAGATAGTGT
ATCTCCAACAACCTGTGCGTTGCCATGCCGTGTATTCTCCTGTAGTAGTC
GTCTCGATCGAACGGGTCCAAGCCTTCCTGTGACTGATTGTGTTCATGCC
ATTTCTACGGACATATTCTCATATTTTCGGTACACGCGGGTGTGCATCAA
GGTGCGATATTGATTCCCAGGAACGGCAGATAGATGCCAATTACACAGAA
CTCGGTGCCTGGTATCAATCAGTATCTGGCATGGGCCTGCCAGCAGCTAC
GTACGTAAATACGCATGATGAACTTCTTCAGTGAGTCAAAACTCGATCAA
CGAGACACGAAACTTTCTATCCCGACCCGCGTCTGTCTCCGCTCAACGCA
GACCATCGACCCCGATCACGTGTGGGAGACCACAGACCTCTCGGCGGGCA
TGGTGCGGAAGGAGGTCAAGTGCGCCCGGTGCCATGCTCACCAGGGGCAC
GTGTTCAACGACGGGCCTCGACCAACAGGAAAGAGGTGCGTGCTCGCGAA
CCGGCGAAATGCGGTTCAAAACTCCCCGAGAGACGTATACTGCTACTGTA
CTACATCACGAAACGCCGGTGTGCGGGAAAAACACTAAGCTTTCCTACCG
TTCGATGCCCCCACCTTACGTGTTAGCTGTGTTTGCATCGCCTGCGCGTG
AGGGAATAGTGTTTGCGGTGACCATCGAGCCTTACCGGTCACCCCAAATA
CTGAGCCTTACTGGTCACCCCAAATACCGAGCACGTGTTGCGTTTTGCCG
AGTTGGTTTCTCGATGAGTTGTTTGCCGCCCAAACGGCAGGGCGCTCGCG
GTTGTAAATGACAATGATTCCTCCGTCGGGCAACGATTTCCTCGTCCCTT
CCACGGGCGGACGTCTCAATTCACATCACGTATTTCTTGTTTTTCGAGCC
ATCGCGTACGTTCGCGCCGGGTTTGGGGCCTGAGATGTCTCCTGGTGTTG
TTGTAGTACGCCTCCTGTCAAACTGGGCTTGTGAGTGTTGATATCATAAT
GATTTTGGTTTGATTTTCTAGGTCCCTGTGCAGTCGAGGTGTCTCCCGCC
ATGTCGATATGCTGGCTTCAACAAAGCAGTACTATCCCGAACTATTTCGA
TACGTTTATCTGGCAGTGTAAGGGCCTGATGCCAACCTCTAATGATGTTG
ACTGATTTTGTACAATATGCGCTAGAGCACCAGAAAATGCACACGAGACG
CACAAGACCAGTCGGAAGGCACCTGGAAAAACAGAAATCGTTGATTCCCG
GATGGGGCGGCAGTAGAGGCTGAGGCAAACATCCATATCATGCAGTCTAC
CTCCACACGCCTCATTTGAAATCAAGATCAATTTTTCACTACTCTGAATT
AAAGTCAATAGAGCCAGAACGGCAGGCGCCCAGACAAATAAGGCCAGTTT
ATATCATGCTAACTGCGCCTGAGTACTTTAATCAGCAGAGGGCACCATGA
AGAGACGTCGTGTGCGCTGGTACGTTCAGGTTTTCTACTGGAGCTGATAT
ATCGAAGGTCGTAGTAGCGGCCTACAATCTCCGCAAAAATGACCAAATTA
GTGCACTAGCTGACTTCTGACCATCCGCCGTTCCGGGGTTTACGGTCCGT
TGCGGCGAGCACTAGCAGCACAAGACACGGGGTCAGTCTAATTTGTCCGT
TTTTGCGGATATTGTAGGCCGCTACTACGACCTTCGATATTTCAGCTCCA
GCAGCATGGCGTCCTCTACTGATTAAAGTACTCAGGTGTAGTTAGACACG
GCGGGAAGGTTGCTTTCTGTTGGTGTACTCTGAGTATTGGATAAAGTATA
CCTCAAACAGAACCAGCGTCAGAAGGGATCTGGCATCAGTCCCTGAAGAT
CTATCGGCAAAGGAGCTTGAATCGAGCCCCAACCCCAACCCCAAACCCAA
CTGCGCCTCGAAACTGGGCACACAATCATGGTCTCTCATGATCACCTGCC
CATCATGTACACCAAAGAAGAACCATCACATTAACTGCACAATGCCAGGT
GATTAGAGCGATACCGCGATCTGTACTTTCCGACTCGGTGTCCCTGTCCC
TGTTTCGAGGATCCCCCCTTAGCTGCTGTTATGCCCGTTCTCTGGTTTGG
TCTGACGCCCAAATAATGTCGTCGCGTTGCCTAAACGTCGTCTCTTACGT
TGTCCCTTCTCCCCCTTCCGAAGGTACTGCGTCAACGCAGCATCCTTGAC
GTTCAAGGCGGCTCACGGTGAAGGTCAGGTGCCGTCGCACGGCATCGCCG
CGGGGTTCGTAGATATGTTGTCGAGGCACCTCCGCATCCGCACGAAGAAC
AAGGGCGGCAAGGAGGGTGCGGAAGGGGAGGAAGAGCCGTCAGCCCGGCC
GACGGTCGCGTGATGTGATATGATGTGATGTGATGTGATATGATATGATA
TGATGTTTTGTGGTTTTAGGCTCACCTCGCCTTTTCAAATCGCGTCGGGT
AGGGTGGAGTGTGAATGCGTTATTTGTTATTTGTAAGCAGTCAAGAAGTG
CGTTATTTGTACTTGGAAGTATTTGGTGTGCGTGTGCTGCTCCGGAAATG
TGACGGCCCATTCGGGGGTTCTCTTGTGTTGTTCTTTCACCGGTGTTTGG
TACGCATGGGGTCGTCAAAGACTGCGCCGCGAAAAGCCCAAGGGTATTGA
ACCTCTTTGCTCCACCGCTTGATGGTTTCGGCGCCAAAGAAATTTTGTGT
ATACGTATTTATGCAAGGTGGGTTTTTCGGGCATCGGCAGGGAAGGTCCT
TCGCATAGATGTGAGGCCCTCTGAAGAAATAGAAAGCGTGTGTCGGTATT
GCGTGTGATGTCGAAGCAAGCACCGGTACACTGCTGTTCGGCTGTGTCGA
GAGAGTAGCTACTGTACCCCGTTGGGATAGTTGGGGGCGCACCTTGGGGT
GTACTGAACTTCGAGCGTAAAAGAACACTGTTCAAGAATTAGTTGTAGTC
TGTTTGTGGTTTCCCCCCTTCATCTGCCTGAACATGGGGCGGAACGCACC
CTTGTTTTGTGTTGAACATGATGAGTCGGCCGTTGGGATGTTTGCTATGT
CAACTGGTGTTGTGCTGGGGTGACAGGTTGAAGGGTGTCTTGTGTCCTTC
CTACCTTGAGTGAGAATATGATGTGCATGTATTGTGAAGGTGGTGTCGTA
AAGTCATACGTTATTGAAACGTTGAAGGACCGCTGGAATTGGCGTTATAG
ATCCGCAGATGGTTTTGGTGATTTTTGGCGCCATTTGTCGATCGAACGGT
GCGGACCTCTGCGCGGGTCGCACAAATTGTCGATGCTTACGGAGCAGCTA
GCTGTTGCGAAGAATGTGACATGAATACCGTGTTAGTTGTTTGTTGTGTA
GGTGTTGCCAGGGTGGTGGAACTGATGACACTGCTTTGTTGTTGGGGATG
CTTTCTTTCGTAGCGCGAGAGTAGGAGGAGTATGGCGACGTTTCGTAGTA
CTTGTCTACATACTTTAGCCTGAAAAAAATCGAGACTGGAACTCATTTAC
TCATCATACCGAGCACGTTATTGATATGTGCCGCGCGGTAAAAG
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Coding sequence (CDS) from alignment at chr_28:10517..15560+

>Ec-28_000030.1 ID=Ec-28_000030.1|Name=Ec-28_000030.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=903bp|location=Sequence derived from alignment at chr_28:10517..15560+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGGTGTCTTGGTGCTCCGCAACTGACTGCTGTAACGAAGTGCGTAAA
ACAAACCCCGGTGTTGTATCGTCTCGACAGTCCCGTCGGTAAGAAGTGTT
ACCGCGGTCCGCGGGGTCGTGGGGTTGAAGACACATTGCATTCACCCGAG
ACCGGAGGCATCGACAAAAACCGCTGCTGCTCCTGGCTGCGGCGCTCACA
AAGCTCACAATCAAGCAACGCGACATCTCCATCTGCAGGCCACAAACCAG
GAACACGGAAAGCTACAGGCATGACCTCGGAGAACAACAGCAGCAGTAGC
ACGAAGCGCGTCGTCGCTGGTGCCGTGTCGGCGTCCGGTTACGATGTCAC
AAGGAGGAAGAAGGGCACCGCACAGCTTGCTAGGGAGCGAGCGCTGAGCA
TAAAACAACGCTACGTCGTCAGCGGCGGGACCGAACCTCCCTTCTCGGGC
CGCTTCTCGAACGGGGTCAGGTACAGCACCAAGAGGCGGGGCACCTTCAA
CTGCGCCGTGTGTGACCTCCCGGCCTACTCGTCTTCTTCCAAGTTCAACA
GCGGCACGGGATGGCCCAGTTTCTACGAGACCATCGACCCCGATCACGTG
TGGGAGACCACAGACCTCTCGGCGGGCATGGTGCGGAAGGAGGTCAAGTG
CGCCCGGTGCCATGCTCACCAGGGGCACGTGTTCAACGACGGGCCTCGAC
CAACAGGAAAGAGGTACTGCGTCAACGCAGCATCCTTGACGTTCAAGGCG
GCTCACGGTGAAGGTCAGGTGCCGTCGCACGGCATCGCCGCGGGGTTCGT
AGATATGTTGTCGAGGCACCTCCGCATCCGCACGAAGAACAAGGGCGGCA
AGGAGGGTGCGGAAGGGGAGGAAGAGCCGTCAGCCCGGCCGACGGTCGCG
TGA
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Synonyms
The feature 'Ec-28_000030.1' has the following synonyms
Synonym
Esi0120_0003
Esi_0120_0003