Ec-27_006930.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006930.1
Unique NameEc-27_006930.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length205
Homology
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BLAST of Ec-27_006930.1 vs. uniprot
Match: D7FY33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY33_ECTSI)

HSP 1 Score: 415 bits (1066), Expect = 7.560e-146
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1 
Query:  154 MSILEYNGAAILAMTGKNCVGICSDSRLGNQAQTVATDFEKIFKMGDKLMVGLPGLATDVITMKELLTFRLNLYRLREEREIKPETFSALMSHILYQKRFGPYFVEPIVAGLKEDNTPFISAFDLIGAPVVTDDFVVGGTCTNNLYGMCESFYRPDMDKDELFETMAQCLLTSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 765
            MSILEYNGAAILAMTGKNCVGICSDSRLGNQAQTVATDFEKIFKMGDKLMVGLPGLATDVITMKELLTFRLNLYRLREEREIKPETFSALMSHILYQKRFGPYFVEPIVAGLKEDNTPFISAFDLIGAPVVTDDFVVGGTCTNNLYGMCESFYRPDMDKDELFETMAQCLLTSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD
Sbjct:    1 MSILEYNGAAILAMTGKNCVGICSDSRLGNQAQTVATDFEKIFKMGDKLMVGLPGLATDVITMKELLTFRLNLYRLREEREIKPETFSALMSHILYQKRFGPYFVEPIVAGLKEDNTPFISAFDLIGAPVVTDDFVVGGTCTNNLYGMCESFYRPDMDKDELFETMAQCLLTSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 204
[Close]
BLAST of Ec-27_006930.1 vs. uniprot
Match: A0A6V1UZ14_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UZ14_HETAK)

HSP 1 Score: 334 bits (856), Expect = 7.350e-114
Identity = 157/204 (76.96%), Postives = 180/204 (88.24%), Query Frame = 1 
Query:  154 MSILEYNGAAILAMTGKNCVGICSDSRLGNQAQTVATDFEKIFKMGDKLMVGLPGLATDVITMKELLTFRLNLYRLREEREIKPETFSALMSHILYQKRFGPYFVEPIVAGLKEDNTPFISAFDLIGAPVVTDDFVVGGTCTNNLYGMCESFYRPDMDKDELFETMAQCLLTSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 765
            MSILEYNG A +AMTGKNCVGICSD RLG Q +TVA DF K FK+ DKL VGL GLATDV T+ +LL F+LN+Y+LREERE+K ETFSA++++ LY++RFGPYFVEP+VAGLK+DNTPFISA DLIGAPV+T DFVV GTCTNNLYGMCESFY+P+M+ DELFETM+QCLL SVDRDALSGWG VVHIITPEG+ SKTLKGR D
Sbjct:    1 MSILEYNGGACIAMTGKNCVGICSDLRLGEQIKTVAMDFPKCFKLNDKLFVGLTGLATDVQTLTQLLRFKLNMYKLREEREMKVETFSAMLTNTLYERRFGPYFVEPVVAGLKDDNTPFISAMDLIGAPVLTSDFVVAGTCTNNLYGMCESFYKPEMEPDELFETMSQCLLASVDRDALSGWGAVVHIITPEGVTSKTLKGRMD 204
[Close]
BLAST of Ec-27_006930.1 vs. uniprot
Match: A0A6U1MII2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MII2_9STRA)

HSP 1 Score: 324 bits (830), Expect = 6.660e-110
Identity = 151/204 (74.02%), Postives = 175/204 (85.78%), Query Frame = 1 
Query:  154 MSILEYNGAAILAMTGKNCVGICSDSRLGNQAQTVATDFEKIFKMGDKLMVGLPGLATDVITMKELLTFRLNLYRLREEREIKPETFSALMSHILYQKRFGPYFVEPIVAGLKEDNTPFISAFDLIGAPVVTDDFVVGGTCTNNLYGMCESFYRPDMDKDELFETMAQCLLTSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 765
            MSI+EYNG A +AM GKNCVGICSD RLG QAQTVATDF K+FKM D+L +GL GLATD+ TM++LL FRLN+Y+L+EERE++PE FSA+MS +LY+KRFGPYFVEPI+AGLK+DNTPF+S  DLIG    TDDFVV GTCT NLYGMCES YRPD   DELFET++QCLL+SVDRDA+SGWG VVHIITP+GI SK LKGR D
Sbjct:    1 MSIMEYNGGACIAMAGKNCVGICSDLRLGMQAQTVATDFPKVFKMNDRLFLGLTGLATDIQTMQQLLKFRLNMYKLKEEREMRPEVFSAMMSSVLYEKRFGPYFVEPIIAGLKDDNTPFLSTMDLIGCESKTDDFVVAGTCTPNLYGMCESLYRPDQGPDELFETLSQCLLSSVDRDAVSGWGAVVHIITPDGITSKMLKGRMD 204
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BLAST of Ec-27_006930.1 vs. uniprot
Match: A0A6U4EA60_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EA60_9STRA)

HSP 1 Score: 322 bits (826), Expect = 2.700e-109
Identity = 151/204 (74.02%), Postives = 176/204 (86.27%), Query Frame = 1 
Query:  154 MSILEYNGAAILAMTGKNCVGICSDSRLGNQAQTVATDFEKIFKMGDKLMVGLPGLATDVITMKELLTFRLNLYRLREEREIKPETFSALMSHILYQKRFGPYFVEPIVAGLKEDNTPFISAFDLIGAPVVTDDFVVGGTCTNNLYGMCESFYRPDMDKDELFETMAQCLLTSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 765
            MSILEYNG A++AM GK+CVGI +D+RLG QAQT+ATDF+K+F++ D+L VGL GL TDV T++ LL FRLNLY+LREEREI P+ FSA++S ILY+KRFGPYFVEP+V GL  D + F+SA DLIGAPV TDDFVV GTCTNNLYGMCES YRPDMDKDELFET+AQCL  SVDRDA+SGWGG VH+ITPEG+ SKTLK RQD
Sbjct:    1 MSILEYNGGAMIAMVGKDCVGIAADTRLGAQAQTIATDFKKVFQLNDRLFVGLAGLGTDVQTLRNLLKFRLNLYKLREEREITPKAFSAMLSSILYEKRFGPYFVEPMVCGLNADGSAFLSAMDLIGAPVFTDDFVVQGTCTNNLYGMCESLYRPDMDKDELFETLAQCLQASVDRDAVSGWGGEVHVITPEGVYSKTLKSRQD 204
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BLAST of Ec-27_006930.1 vs. uniprot
Match: A0A7S2FDP8_9STRA (Proteasome subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDP8_9STRA)

HSP 1 Score: 315 bits (808), Expect = 4.190e-106
Identity = 147/204 (72.06%), Postives = 176/204 (86.27%), Query Frame = 1 
Query:  154 MSILEYNGAAILAMTGKNCVGICSDSRLGNQAQTVATDFEKIFKMGDKLMVGLPGLATDVITMKELLTFRLNLYRLREEREIKPETFSALMSHILYQKRFGPYFVEPIVAGLKEDNTPFISAFDLIGAPVVTDDFVVGGTCTNNLYGMCESFYRPDMDKDELFETMAQCLLTSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 765
            MSILEYNG AI+AMTGKNCV I  D+RLG Q QTV+ DF+KIFKM DKLM+G+ GLATDV+T+++LL F+LN+Y+LREERE+KPETFS L++ +LY+KRFGPYF EP+VAGL E N PF+SA DLIGAPV+T DFVV GTCT NL GMCE+ YRPDM+ D+LFET++QCLL SVDRDALSGWG +VH+ITPEG  S+ LKGRQD
Sbjct:   31 MSILEYNGGAIIAMTGKNCVAIACDTRLGLQQQTVSCDFQKIFKMNDKLMLGVTGLATDVLTLQQLLKFKLNMYKLREEREMKPETFSWLLTSVLYEKRFGPYFTEPVVAGLNEKNEPFLSAMDLIGAPVMTKDFVVSGTCTANLNGMCETMYRPDMEPDDLFETISQCLLASVDRDALSGWGAMVHVITPEGTTSRRLKGRQD 234
[Close]
BLAST of Ec-27_006930.1 vs. uniprot
Match: A0A6U6IRL2_9STRA (Hypothetical protein n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A6U6IRL2_9STRA)

HSP 1 Score: 311 bits (797), Expect = 6.990e-105
Identity = 148/204 (72.55%), Postives = 171/204 (83.82%), Query Frame = 1 
Query:  154 MSILEYNGAAILAMTGKNCVGICSDSRLGNQAQTVATDFEKIFKMGDKLMVGLPGLATDVITMKELLTFRLNLYRLREEREIKPETFSALMSHILYQKRFGPYFVEPIVAGLKEDNTPFISAFDLIGAPVVTDDFVVGGTCTNNLYGMCESFYRPDMDKDELFETMAQCLLTSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 765
            MSILEYNGAAI+AM GK CVGI SD+RLG QAQTVATDF K+FKM D+L VGL GLATDV TM +LL FR NLY LREER++ P   S L+S++LY+KRFGPYF+EP+VAGL E+  PF+S  DLIGAPV TDDFVV GT T NLYGMCE+ Y+PDM+ D+LFET+AQ LL SVDRDALSGWGGVVHIIT +G+MS+ LKGRQD
Sbjct:    1 MSILEYNGAAIIAMAGKGCVGIASDTRLGIQAQTVATDFRKVFKMNDRLFVGLAGLATDVQTMDQLLRFRQNLYELREERQMSPRVMSNLLSNLLYEKRFGPYFIEPVVAGLDENGKPFLSGMDLIGAPVYTDDFVVSGTATGNLYGMCETLYKPDMEADQLFETLAQALLASVDRDALSGWGGVVHIITKDGVMSRELKGRQD 204
[Close]
BLAST of Ec-27_006930.1 vs. uniprot
Match: A0A835ZI80_9STRA (Nucleophile aminohydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI80_9STRA)

HSP 1 Score: 311 bits (797), Expect = 6.990e-105
Identity = 146/204 (71.57%), Postives = 176/204 (86.27%), Query Frame = 1 
Query:  154 MSILEYNGAAILAMTGKNCVGICSDSRLGNQAQTVATDFEKIFKMGDKLMVGLPGLATDVITMKELLTFRLNLYRLREEREIKPETFSALMSHILYQKRFGPYFVEPIVAGLKEDNTPFISAFDLIGAPVVTDDFVVGGTCTNNLYGMCESFYRPDMDKDELFETMAQCLLTSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 765
            MSIL YNG  I+AMTGK CVGI SD+RLGNQAQTVA DF+KIF+M D++M+GL GLATDV T+++LLTF++N+Y+LREER++KP+TFSAL+S  LY++RFGPYF EP+VAGL ED  PF+SA DLIGAPV TDDFVV GT T NLYGMCE+ YRPDM+++ELFET++Q LL SVDRDALSGWGGVVHII P G+ +K LK RQD
Sbjct:    1 MSILSYNGGDIIAMTGKGCVGIASDTRLGNQAQTVACDFQKIFRMTDRIMLGLTGLATDVQTLQQLLTFKINMYKLREERDMKPKTFSALLSTTLYERRFGPYFTEPVVAGLDEDGKPFLSAMDLIGAPVFTDDFVVAGTSTENLYGMCETLYRPDMNEEELFETLSQALLASVDRDALSGWGGVVHIIGPNGVTTKQLKCRQD 204
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BLAST of Ec-27_006930.1 vs. uniprot
Match: A0A7S2XNS4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNS4_9STRA)

HSP 1 Score: 308 bits (790), Expect = 8.120e-104
Identity = 147/204 (72.06%), Postives = 171/204 (83.82%), Query Frame = 1 
Query:  154 MSILEYNGAAILAMTGKNCVGICSDSRLGNQAQTVATDFEKIFKMGDKLMVGLPGLATDVITMKELLTFRLNLYRLREEREIKPETFSALMSHILYQKRFGPYFVEPIVAGLKEDNTPFISAFDLIGAPVVTDDFVVGGTCTNNLYGMCESFYRPDMDKDELFETMAQCLLTSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 765
            MSILEYNGAAI+AM GK+CVGI +D+RLG QAQTVATDF+K+FKM D+L  GL GLA+DV T+ +LL FR NLY LREERE+ PE FS L+S +LY+KRFGPYFVEPIVAGL     PF+S  DLIGAPV TDDFVV GTCT N+YGMCE+ Y+PDM+ D+LFET+AQ LL SVDRDALSGWGGVVHIIT +G+ S+ LKGRQD
Sbjct:    1 MSILEYNGAAIIAMAGKDCVGIAADTRLGVQAQTVATDFKKVFKMNDRLFCGLAGLASDVQTLDQLLKFRQNLYELREEREMTPEVFSNLLSTLLYEKRFGPYFVEPIVAGLDNKGKPFLSGMDLIGAPVYTDDFVVSGTCTGNMYGMCETLYKPDMEPDQLFETLAQALLASVDRDALSGWGGVVHIITKDGVTSRELKGRQD 204
[Close]
BLAST of Ec-27_006930.1 vs. uniprot
Match: A0A4D9CN71_9STRA (Proteasome subunit beta n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CN71_9STRA)

HSP 1 Score: 308 bits (790), Expect = 8.400e-104
Identity = 146/205 (71.22%), Postives = 174/205 (84.88%), Query Frame = 1 
Query:  154 MSILEYNGAAILAMTGKNCVGICSDSRLGNQAQTVATDFEKIFKMGDKLMVGLPGLATDVITMKELLTFRLNLYRLREEREIKPETFSALMSHILYQKRFGPYFVEPIVAGLK-EDNTPFISAFDLIGAPVVTDDFVVGGTCTNNLYGMCESFYRPDMDKDELFETMAQCLLTSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 765
            MSILEYNG A++AM GKNCV I SD R G QAQTVA +F K+ KM D+L VGL GLATD+ T+++LL FRLNLY+LREER+IKPETFSAL+SHILY+KRFGPYFVEP+VAGL+ EDNTPFIS  DLIGAPV   DFVV GTC  NLYG+CESF++PD++ ++LFE ++Q LL SVDRDALSGWG VVH+ITP+G+ S+TLK RQD
Sbjct:    1 MSILEYNGGAVVAMVGKNCVAIASDLRYGVQAQTVACNFPKVHKMSDRLFVGLSGLATDIQTLEQLLRFRLNLYKLREERDIKPETFSALLSHILYEKRFGPYFVEPLVAGLRAEDNTPFISGMDLIGAPVFAKDFVVAGTCAANLYGLCESFFKPDLEPEQLFEVLSQSLLASVDRDALSGWGAVVHVITPDGVTSRTLKARQD 205
[Close]
BLAST of Ec-27_006930.1 vs. uniprot
Match: A0A7S3K6H9_9STRA (Proteasome subunit beta n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K6H9_9STRA)

HSP 1 Score: 306 bits (785), Expect = 4.680e-103
Identity = 142/204 (69.61%), Postives = 172/204 (84.31%), Query Frame = 1 
Query:  154 MSILEYNGAAILAMTGKNCVGICSDSRLGNQAQTVATDFEKIFKMGDKLMVGLPGLATDVITMKELLTFRLNLYRLREEREIKPETFSALMSHILYQKRFGPYFVEPIVAGLKEDNTPFISAFDLIGAPVVTDDFVVGGTCTNNLYGMCESFYRPDMDKDELFETMAQCLLTSVDRDALSGWGGVVHIITPEGIMSKTLKGRQD 765
            MSILE+NGAAI+AM GKNCV I SD+R G + QTV  DFEK+FKM DK+ VGL GLATDV T++  L F+L LY+LREER++KPE F+AL+SH+LY+KRFGPYFVEP+VAGLKED TPF+   DLIGAPV T+DFVV GTC +NL G+CESF+RPDM+ D+LFET++QCLL SVDRDALSGWG +VH+ITP+G+ SK LK R D
Sbjct:    1 MSILEHNGAAIVAMAGKNCVAIASDTRFGLRQQTVTCDFEKVFKMSDKIYVGLAGLATDVQTLRATLKFKLALYKLREERKMKPEAFAALLSHMLYEKRFGPYFVEPLVAGLKEDGTPFLCGMDLIGAPVFTNDFVVSGTCASNLNGLCESFFRPDMEPDDLFETISQCLLASVDRDALSGWGAIVHVITPQGVTSKRLKARMD 204
The following BLAST results are available for this feature:
BLAST of Ec-27_006930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY33_ECTSI7.560e-146100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1UZ14_HETAK7.350e-11476.96Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U1MII2_9STRA6.660e-11074.02Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U4EA60_9STRA2.700e-10974.02Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2FDP8_9STRA4.190e-10672.06Proteasome subunit beta n=1 Tax=Florenciella parvu... [more]
A0A6U6IRL2_9STRA6.990e-10572.55Hypothetical protein n=2 Tax=Mediophyceae TaxID=58... [more]
A0A835ZI80_9STRA6.990e-10571.57Nucleophile aminohydrolase n=1 Tax=Tribonema minus... [more]
A0A7S2XNS4_9STRA8.120e-10472.06Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A4D9CN71_9STRA8.400e-10471.22Proteasome subunit beta n=1 Tax=Nannochloropsis sa... [more]
A0A7S3K6H9_9STRA4.680e-10369.61Proteasome subunit beta n=1 Tax=Aureoumbra lagunen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:6347552..6351473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score418.7
Seed ortholog evalue1.6e-114
Seed eggNOG ortholog2880.D7FY33
Preferred namePBC1
Length769
KEGG koko:K02735,ko:K03660
KEGG Pathwayko03050,ko03410,map03050,map03410
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
Gene idEc-27_006930.1
GOsGO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005839,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0016020,GO:0019538,GO:0019774,GO:0031090,GO:0032991,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0098588,GO:0098805,GO:1901564,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0180@2759
EC3.4.25.1,4.2.99.18
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006930Ec-27_006930Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 6347552..6351473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006930.1Ec-27_006930.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 6347706..6351473 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006930.1.1Ec-27_006930.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6347552..6347708 +
Ec-27_006930.1.2Ec-27_006930.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6349308..6349454 +
Ec-27_006930.1.3Ec-27_006930.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6350252..6350397 +
Ec-27_006930.1.4Ec-27_006930.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6350619..6350793 +
Ec-27_006930.1.5Ec-27_006930.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6351330..6351473 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0069305UTR:Ec-27_006930.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_27 6347552..6347705 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006930.1CDS:Ec-27_006930.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 6347706..6347708 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006930.1 ID=Ec-27_006930.1|Name=Ec-27_006930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=205bp
MSILEYNGAAILAMTGKNCVGICSDSRLGNQAQTVATDFEKIFKMGDKLM
VGLPGLATDVITMKELLTFRLNLYRLREEREIKPETFSALMSHILYQKRF
GPYFVEPIVAGLKEDNTPFISAFDLIGAPVVTDDFVVGGTCTNNLYGMCE
SFYRPDMDKDELFETMAQCLLTSVDRDALSGWGGVVHIITPEGIMSKTLK
GRQD*
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spliced messenger RNA

>Ec-27_006930.1 ID=Ec-27_006930.1|Name=Ec-27_006930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=769bp|location=Sequence derived from alignment at chr_27:6347552..6351473+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CTCTCGCTGGCTCGCCTGCTGAATCTCAAGGAAGAAAGACTCAAGCTTGA
CAAGGTTTGCTTTGCAAGGGGTGCATATACGCCAATAGTGTTGAGGAACG
CGCGGAGCTTGGTCGGAAGAGGAAGGAACTTCTCCTTTGCTGGTCAATAC
AAAGATGTCTATCCTCGAGTACAATGGTGCGGCCATCCTGGCCATGACCG
GCAAGAACTGCGTGGGCATCTGCTCCGACAGCCGCCTCGGAAACCAGGCG
CAGACCGTGGCAACAGACTTCGAGAAGATATTCAAGATGGGGGATAAACT
CATGGTGGGGCTACCAGGGCTGGCGACGGACGTGATCACAATGAAGGAGC
TGCTGACCTTCCGACTCAACCTCTACCGCCTTCGGGAGGAGCGAGAGATC
AAGCCGGAGACCTTTTCGGCGCTCATGTCCCACATTCTCTACCAGAAAAG
GTTTGGTCCGTACTTCGTGGAGCCGATCGTGGCCGGGTTGAAAGAGGACA
ACACTCCCTTCATATCGGCGTTCGACCTCATCGGGGCGCCCGTGGTGACC
GATGACTTCGTTGTGGGGGGGACTTGCACCAACAACTTGTACGGCATGTG
CGAGAGCTTCTACAGGCCAGACATGGACAAGGACGAGCTCTTCGAGACGA
TGGCTCAGTGCCTCTTGACTTCGGTAGATCGCGATGCACTCAGCGGGTGG
GGGGGCGTGGTTCACATCATCACGCCAGAGGGTATCATGTCCAAGACGCT
CAAGGGTCGACAGGATTAG
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protein sequence of Ec-27_006930.1

>Ec-27_006930.1 ID=Ec-27_006930.1|Name=Ec-27_006930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=205bp
MSILEYNGAAILAMTGKNCVGICSDSRLGNQAQTVATDFEKIFKMGDKLM
VGLPGLATDVITMKELLTFRLNLYRLREEREIKPETFSALMSHILYQKRF
GPYFVEPIVAGLKEDNTPFISAFDLIGAPVVTDDFVVGGTCTNNLYGMCE
SFYRPDMDKDELFETMAQCLLTSVDRDALSGWGGVVHIITPEGIMSKTLK
GRQD*
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mRNA from alignment at chr_27:6347552..6351473+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006930.1 ID=Ec-27_006930.1|Name=Ec-27_006930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3922bp|location=Sequence derived from alignment at chr_27:6347552..6351473+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CTCTCGCTGGCTCGCCTGCTGAATCTCAAGGAAGAAAGACTCAAGCTTGA
CAAGGTTTGCTTTGCAAGGGGTGCATATACGCCAATAGTGTTGAGGAACG
CGCGGAGCTTGGTCGGAAGAGGAAGGAACTTCTCCTTTGCTGGTCAATAC
AAAGATGGTGAGAGTCTTTATAGAGACAGCCAGGCATGGTCGAAGGTCTC
GTTGCTGCTGGGTTGGTTGGCTTTTCCCCTTGCTCTGGCGCGGAAACCGC
TTGTTATTTTGGTGCACCATGGGTCGTACATTGGAGTACCTCCGAAGTTC
TTCGCCCCTCAGGAGGCTTTGTCATTGCAGCGCGACATCCGTTGCCGATT
GCAACGCACTCCGGGTGTGTGTGCTTGACATGGCTAACCCTACCGCTGCT
GCAGCAGCAACGCAAAGTTGCAGAGAACAATCGATGCGTTCATCCGTCCA
CAAAAGCTCAAGCCCGTCGTTTGTGCTGAGATTTGGAGCTATGACTCTCG
CTGCGTGCAGTATGCCCTACGAGAAGCATGTCCACGGAAGGCACAGCTTT
CGTGATGTCCACTCTCGCACTTGGGCTTCTCGTAACCGCGACCGCTTCGT
GCTGCTATGAGATCGCGATATCGGCAGACGCTGTAAGCGATAGAGATGAC
AACGCATTGTAGTTACATCCTGATAAATGCCTTTTCCACGGCTGGCTCTG
AACACCCTTCTATGCCAGGGAGCCCCCCTGGTGCCTAGTGTAGACTCTTT
CTATCGTCTATTGCTGTGATTCAACAGATGCCCCACCATCAGACTACGCT
CTTGGGGGGGGGTGATATCTTACGTATGGATATATGCATATGCGGCACCT
CCGTTGCAATGTGTTGACATTCTCTCTCATTTTTAACAGTACCATGACCA
AGCGTGCTTGCATACGCCCACAGCTGTCCATCACACTTATTTTAGGAGTA
TCTCCTGTAAACGTTAACGTTGCCGACAACTCACTACTACACCGTTGGTG
TCCTGGTGTTCGGATCGTTGGGCTAAGATATCATCCGGTGGGTATATCTT
CCAGAAATACACCGACCACCTGTCCAGCCTCTTTGTATCCCGAGATTCTG
CAAGCAACGGGACATTGATTGTCAGCAGCAGTCAAGAAGTTTATAGGGGT
TCTCTCTTGCTTAGTGTTGCCTGGGAGTGAGCGGTGTTTAGCGAGCGACT
GAGAGAGAAGAGGAAGCCTGCCGATGACGCCAAGTGTAAAGTGTGCCGGA
ACGGAGCGGATCCGACCGCTGTTTGCAGGTCACCTGCTCCGTTTCAGTTC
AATGCCTCCCGTACCTTCCTTTCTCTCTCAGTCGCCCGCTGTGGCCCACT
CATAGACAACATTGAGCACGAGGGAGCGCCTATACGCTTCGCGCTGCGGC
TAACAAGCATTGTTCCGTTGCTGGCATCATCTCGGAATACGAAGAGGCTG
GGCAGGTGGTCGGTGTAAATCTGCAAGATATACCGGCCCAGATGGTATCT
TCGTCCCAAGGGTCTAAATACTACGACACTTCGCTTTTATAATGTGGGGT
GCAACGAAATCGACATGCGCATACCGCCCTCCGACCTTCAACTGCGGGCA
TCAAACACGCCGAAGATCAAGTCATGTGGGTTGGTAGTACTAGTAAGTCA
CCAGTCTAGATTTTCTGCGTCGGTTAGTCGTATCAGCCTACCCCCACCAA
ACAGGTGTGCTTGCGTGTGTCTCACGTGTTGCCCCTCCTGTGGTCCCTGC
CGCCAGTCTATCCTCGAGTACAATGGTGCGGCCATCCTGGCCATGACCGG
CAAGAACTGCGTGGGCATCTGCTCCGACAGCCGCCTCGGAAACCAGGCGC
AGACCGTGGCAACAGACTTCGAGAAGATATTCAAGATGGGGGATAAACTC
ATGGTAAGCGGCAGCCAGCCAGCCAGCGGAGATGCTCGTACCCCTTCTCT
GCACCAGCTCTTGACATCCTGGCCTTGGGGCGTGTACCTCTGTTGAAACA
TGTTTTGCCGTGCCGTGTTGTAGCAGAGCAGCCAGGGAAACAGTAGATAT
CTACAGCTGCTTACATCCAATAGTGCGGGATTTTTTCTATCTAGCGCAAC
GACTATATACTGGCTGCCGTCACCTCACCCTAAAGCGAGTCGCATTGCAT
TTCCTGTTTTAGAGAGCAACTGCTGTGTGTATGTGGTATTGCGTTGCTCC
TGGGTTAGAGGAGCATCAGCACGGAGTGGGTGTTCCTACAAGGGTGTTGG
AATTGAAGTGATGGGTATCCATGTATCCATGCTGTGCCGGTTGGAAGTAC
CAGGGGCTGCGATGAAGTGTCGAGAACATCAGATCTCATGGAGTACACCT
TAAAAGCTAGTGCAGCCAGGGTACCTCAAAGGCATCGTCCCCCAACAGTG
CGGGGACCCCAGCTGAAGTGCGATCGAATCCTCTTGGCCTGTGTTTTACC
ACAATACGAAACGTCGCATGTTGCCCTTTGCGCACAGGTGGGTCTCACGT
GGTGCAGTATCTTGCCGCTTTGCCACCCTAATGAGGGACCCTGACTGACC
GCTGCATGTATTTTTATTCGGTCATCTCCCCTCGCACGGGGTAGGCTAGT
CTGTGCGACGTTTGGTAGTTATTGGTTTTCCTGCTCTTACGATTTGACTC
CGTTCCTTTCTCCGAATTGTTTTTTGGTCGTCTGGATCTGTGGGCTAAAG
GTGGGGCTACCAGGGCTGGCGACGGACGTGATCACAATGAAGGAGCTGCT
GACCTTCCGACTCAACCTCTACCGCCTTCGGGAGGAGCGAGAGATCAAGC
CGGAGACCTTTTCGGCGCTCATGTCCCACATTCTCTACCAGAAAAGGCAA
GCCGAGTAGCCCATCGTTATTCTACCAGGGGTTTGTTCCCTCTATCACAT
CTATCACATCTCTTCACCAATGATCCCGCTTCCTCGTTTCGAGTCTTGGG
GTCGACTTCCATGCAAGAAATTTATTCCTTCCCGGTTTTTTCAGCGGTAC
GGTTTTCCATTTGTATGTACTTACCATTTTTATTTTGTTTGCCCTGGTTC
TTCCCGTGGGTTGGCAGGTTTGGTCCGTACTTCGTGGAGCCGATCGTGGC
CGGGTTGAAAGAGGACAACACTCCCTTCATATCGGCGTTCGACCTCATCG
GGGCGCCCGTGGTGACCGATGACTTCGTTGTGGGGGGGACTTGCACCAAC
AACTTGTACGGCATGTGCGAGAGCTTCTACAGGCCAGACATGGTGAGAGG
TTCATCAATTCTGGACCCCCCATGAGAGTTTTTGTTGGTGGATTGCAGTA
CCACAAGAAATTTCTTTCCCGTCTCGTATTCCTGATCGGTGGACACCTAC
CGTGCCCTCGGCTCGGCAATGATAAATACCAAAGTACGGGGCACACATGC
ATATGAAGTGTGAGCACTACTTGGACCGTGCATGATACTGTAGCAAGGAG
CGAGCACAACTCTCTTCGCAGAAGAACAAGAAGGCAACTGCAACTGCAGG
CCCTCGTGAGGTCGCCTTACGGCGTTAGTGTTACCTTTTGGCAGACTACG
TGGACTAGCTAAATCAAAGTTCTCTCTGCAGACCCACGCAAGGCGGGCCT
TTTTCCAACGAAGTCTGCGTGCTGCATGTCTGCGACGGTGGAATGGGACA
GAATTCCCTTGTTACCTTGCTTCCGTACATTCGTGCAGCGCAAACTACGT
AAGACAACTCTGGTTCACTCGACCTTCCACCCCCCCCTTTGATTCTCTTT
GATTCTCTTTGATTCTTGGGTCTGGTAGGACAAGGACGAGCTCTTCGAGA
CGATGGCTCAGTGCCTCTTGACTTCGGTAGATCGCGATGCACTCAGCGGG
TGGGGGGGCGTGGTTCACATCATCACGCCAGAGGGTATCATGTCCAAGAC
GCTCAAGGGTCGACAGGATTAG
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Coding sequence (CDS) from alignment at chr_27:6347552..6351473+

>Ec-27_006930.1 ID=Ec-27_006930.1|Name=Ec-27_006930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=615bp|location=Sequence derived from alignment at chr_27:6347552..6351473+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCTATCCTCGAGTACAATGGTGCGGCCATCCTGGCCATGACCGGCAA
GAACTGCGTGGGCATCTGCTCCGACAGCCGCCTCGGAAACCAGGCGCAGA
CCGTGGCAACAGACTTCGAGAAGATATTCAAGATGGGGGATAAACTCATG
GTGGGGCTACCAGGGCTGGCGACGGACGTGATCACAATGAAGGAGCTGCT
GACCTTCCGACTCAACCTCTACCGCCTTCGGGAGGAGCGAGAGATCAAGC
CGGAGACCTTTTCGGCGCTCATGTCCCACATTCTCTACCAGAAAAGGTTT
GGTCCGTACTTCGTGGAGCCGATCGTGGCCGGGTTGAAAGAGGACAACAC
TCCCTTCATATCGGCGTTCGACCTCATCGGGGCGCCCGTGGTGACCGATG
ACTTCGTTGTGGGGGGGACTTGCACCAACAACTTGTACGGCATGTGCGAG
AGCTTCTACAGGCCAGACATGGACAAGGACGAGCTCTTCGAGACGATGGC
TCAGTGCCTCTTGACTTCGGTAGATCGCGATGCACTCAGCGGGTGGGGGG
GCGTGGTTCACATCATCACGCCAGAGGGTATCATGTCCAAGACGCTCAAG
GGTCGACAGGATTAG
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Synonyms
The feature 'Ec-27_006930.1' has the following synonyms
Synonym
Esi0339_0017
Esi_0339_0017