|
Homology
BLAST of Ec-27_006320.1 vs. uniprot
Match: D8LAU9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAU9_ECTSI) HSP 1 Score: 530 bits (1366), Expect = 1.850e-183 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 2
Query: 593 MGFQATAFSSPIRANKPLQRPXXXXXXXXXXXXLGVGGWLSSPPRAISRTSSSRRRPHRPYASLFDSGDENNARDDSPNPGNADSQGEAPESESAPSSPDGGAKPVPRADEQLTGSLADAGATGEGPPQAEGEAAAAGEGAEEEQVDWDKAWASTRQRMEREKRAAPAFSGRKQVVATKNEDGGYDFEEISADGSSRMRGDKGRGGFGFADSNQVEDGPGGIRRKEQEAVNFATTNQAFAGLFAILLASLIFEVYVYMSGGITNGSTRFQDMGQPTTYDALPLPATPPTDSDLVV 1477
MGFQATAFSSPIRANKPLQRPXXXXXXXXXXXXLGVGGWLSSPPRAISRTSSSRRRPHRPYASLFDSGDENNARDDSPNPGNADSQGEAPESESAPSSPDGGAKPVPRADEQLTGSLADAGATGEGPPQAEGEAAAAGEGAEEEQVDWDKAWASTRQRMEREKRAAPAFSGRKQVVATKNEDGGYDFEEISADGSSRMRGDKGRGGFGFADSNQVEDGPGGIRRKEQEAVNFATTNQAFAGLFAILLASLIFEVYVYMSGGITNGSTRFQDMGQPTTYDALPLPATPPTDSDLVV
Sbjct: 1 MGFQATAFSSPIRANKPLQRPXXXXXXXXXXXXLGVGGWLSSPPRAISRTSSSRRRPHRPYASLFDSGDENNARDDSPNPGNADSQGEAPESESAPSSPDGGAKPVPRADEQLTGSLADAGATGEGPPQAEGEAAAAGEGAEEEQVDWDKAWASTRQRMEREKRAAPAFSGRKQVVATKNEDGGYDFEEISADGSSRMRGDKGRGGFGFADSNQVEDGPGGIRRKEQEAVNFATTNQAFAGLFAILLASLIFEVYVYMSGGITNGSTRFQDMGQPTTYDALPLPATPPTDSDLVV 295
BLAST of Ec-27_006320.1 vs. uniprot
Match: A0A836C767_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C767_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 1.250e-10 Identity = 59/171 (34.50%), Postives = 88/171 (51.46%), Query Frame = 2
Query: 1028 VDWDKAWASTRQRM-------EREKRAA----------PAFSGRKQVVATKNEDGGYDFEEISADGSSRMRGDKGRGGFGF-ADSNQVEDGPGGIRRKEQEAVNFATTNQAFAGLFAILLASLIFEVYVYMSGGITNGSTRFQDMGQPTTY--DALPLPATPP-TDSDLVV 1477
VDWD AWA+ ++ M + RA PAF+GRK+++ T N++ GY + EI A G G+ GGF DS Q++D I KE++ V +Q F A++ L F + V M+GGI++G++RF+D+ P A+P P+ D DLVV
Sbjct: 115 VDWDGAWAAKQKEMGNGDSGSDDSARAVEPXXXXXVSRPAFAGRKEIIVTGNKEEGYTYTEIDASGRVSRAGEA-DGGFRLDEDSPQLKDARRRIIEKEEQLVEAVAFDQVFVVGGALIAVLLAFMINVGMTGGISDGASRFRDVELPVNGVPPAVPHPSNQVYPDDDLVV 284
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Length | 2013 |
Hectar predicted targeting category | other localisation |
Gene id | Ec-27_006320.1 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-27_006320.1 ID=Ec-27_006320.1|Name=Ec-27_006320.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=314bp MRALCFLPSNAGVGLQAGMGFQATAFSSPIRANKPLQRPPPPPPPPPPPP PLGVGGWLSSPPRAISRTSSSRRRPHRPYASLFDSGDENNARDDSPNPGN ADSQGEAPESESAPSSPDGGAKPVPRADEQLTGSLADAGATGEGPPQAEG EAAAAGEGAEEEQVDWDKAWASTRQRMEREKRAAPAFSGRKQVVATKNED GGYDFEEISADGSSRMRGDKGRGGFGFADSNQVEDGPGGIRRKEQEAVNF ATTNQAFAGLFAILLASLIFEVYVYMSGGITNGSTRFQDMGQPTTYDALP LPATPPTDSDLVV* back to topspliced messenger RNA >Ec-27_006320.1 ID=Ec-27_006320.1|Name=Ec-27_006320.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2013bp|location=Sequence derived from alignment at chr_27:5835752..5839909- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.
TTTGTGGTCCAACCGCCTCTCGCCCTTCTGGTGTTTTTTTTCCCAACGTC AGAAAAGGCAGGGTTGGCGATCTCCCTCTCTCTCTCTCTTGTCCTCTTTC CGGTTGCGCTGCGGTCCTCGCGCACAGCGACCACCTCGCCCACGGATCAG GAGACACGATAACTCCCTTCACCACGGGCGCTTGTCGTGCTCTTGTGGCG TCGCGCGCCCTCTGCCCCTCTCTCTCTCAATCTCTCTGTGGATGTCTCTT CAAGAGACCTCGCCGGAGGAAGTCAGGAAGTCGAAGACCCTCGCTGCCTG ACCAGCTTTCGGACGACGCCAAATTTTGCGTTGATTTTGCCACTTTAGGA CGGGACGGGGGTTTCATATGACAGGAGGCGTGTTTGCACACCACATGAAC TCGTCGGAGAGAACCTCTGCAGCAGCAGCGAGCGTGGTCAAACCCCGAGC ATCACGTGCACGTGCCGTCAGCACCAGCACTCAGAGGATAGTGAGGACGC GCTGAGAAGGTTGTTGTCGTTGCTATCAGGGCACCCCGCAATGAGGGCGC TATGTTTTCTTCCTTCCAATGCGGGGGTGGGGCTCCAGGCGGGGATGGGT TTCCAAGCAACGGCGTTCTCCTCCCCGATCCGCGCGAACAAACCGCTTCA GCGGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTTGGCG TGGGGGGCTGGTTGTCGTCACCACCGAGAGCAATATCAAGAACAAGCAGC TCCCGCCGACGCCCTCACCGGCCGTATGCCTCGCTGTTTGACTCTGGCGA CGAGAACAATGCCCGGGACGACTCCCCTAACCCTGGCAACGCCGACTCTC AGGGAGAAGCCCCAGAATCAGAGAGCGCCCCATCCTCGCCGGACGGCGGG GCGAAGCCGGTGCCTCGAGCCGACGAGCAATTGACGGGGAGTCTAGCCGA CGCCGGTGCTACGGGGGAGGGCCCACCACAAGCGGAGGGCGAAGCAGCTG CGGCGGGAGAGGGCGCAGAGGAGGAGCAAGTAGACTGGGACAAGGCCTGG GCGAGCACCCGGCAAAGAATGGAGCGGGAGAAGAGGGCGGCCCCGGCGTT TTCGGGCCGGAAGCAGGTCGTGGCTACCAAGAACGAGGACGGGGGTTACG ATTTCGAGGAGATTTCGGCGGACGGGTCTAGCAGGATGCGGGGTGACAAG GGGAGAGGGGGGTTTGGGTTCGCCGACAGTAACCAGGTGGAGGACGGGCC GGGGGGCATCCGCCGGAAAGAGCAAGAAGCCGTCAACTTCGCCACTACGA ACCAGGCGTTCGCGGGCTTGTTTGCCATCCTCCTGGCGTCCCTGATCTTC GAGGTGTACGTCTACATGTCTGGAGGGATCACCAATGGGTCGACGCGGTT CCAGGACATGGGCCAACCCACAACGTACGACGCGTTGCCATTACCGGCGA CCCCACCGACGGACTCGGATTTGGTCGTGTGAAGTTGATGGGGGCAAAAC CTGGCGCGGGTGATGACATCAGCAATCGCGCAAAGGCAAACAAGGAGCCG GCGGGTGCGGCAAACATGTCTAGAACTGCCCCCAAGAATCCCTGGAATTT TCAGGAAGCGCTGCGAGAGGGGGGGGGCGGCACGGGTCAAACACGACCTT TGTGCGATATCAGGTTCCGTGTTGCAGTGGCATTGGCTGCGGGAGGACCC ACCCGGTGTTGTGGGTAAAAAATGATGCAGGGTCTGGGGTTCCGTTGCAC CGACAGCGTTTTCTATATGTGGCGGGAGTTGATGTACATATTTGGGGGGG ACTCTGTAAACTTGCACGGTTGCGGACGAAGGAATTTCTTGTAGAGTGGT GGTGGCAGATGGTGCTGTCGGGCATGCGCCCTCGGTTTGACGTTCCAGTT TTGACGAAGCCCGCCATGGTCTAGATAGCACTATCTGCTGCGTGGCTTGT GGTATAGGCGCGAAAATGCCCCAGCTTGGGATGCATGTATCAATCCATAA TTTTGTCGTTTGT back to topprotein sequence of Ec-27_006320.1 >Ec-27_006320.1 ID=Ec-27_006320.1|Name=Ec-27_006320.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=314bp
MRALCFLPSNAGVGLQAGMGFQATAFSSPIRANKPLQRPPPPPPPPPPPP PLGVGGWLSSPPRAISRTSSSRRRPHRPYASLFDSGDENNARDDSPNPGN ADSQGEAPESESAPSSPDGGAKPVPRADEQLTGSLADAGATGEGPPQAEG EAAAAGEGAEEEQVDWDKAWASTRQRMEREKRAAPAFSGRKQVVATKNED GGYDFEEISADGSSRMRGDKGRGGFGFADSNQVEDGPGGIRRKEQEAVNF ATTNQAFAGLFAILLASLIFEVYVYMSGGITNGSTRFQDMGQPTTYDALP LPATPPTDSDLVV* back to topmRNA from alignment at chr_27:5835752..5839909- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Ec-27_006320.1 ID=Ec-27_006320.1|Name=Ec-27_006320.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4158bp|location=Sequence derived from alignment at chr_27:5835752..5839909- (Ectocarpus species7 Ec32 male_plus_femaleSDR) TTTGTGGTCCAACCGCCTCTCGCCCTTCTGGTGTTTTTTTTCCCAACGTC
AGAAAAGGCAGGGTTGGCGATCTCCCTCTCTCTCTCTCTTGTCCTCTTTC
CGGTTGCGCTGCGGTCCTCGCGCACAGCGACCACCTCGCCCACGGATCAG
GAGACACGATAACTCCCTTCACCACGGGCGCTTGTCGTGCTCTTGTGGCG
TCGCGCGCCCTCTGCCCCTCTCTCTCTCAATCTCTCTGTGGATGTCTCTT
CAAGAGACCTCGCCGGAGGAAGTCAGGAAGTCGAAGACCCTCGCTGCCTG
ACCAGCTTTCGGACGACGCCAAATTTTGCGTTGATTTTGCCACTTTAGGA
CGGGACGGGGGTTTCATATGACAGGAGGCGTGTTTGCACACCACATGAAC
TCGTCGGAGAGAACCTCTGCAGCAGCAGCGAGCGTGGTCAAACCCCGAGC
ATCACGTGCACGTGCCGTCAGCACCAGCACTCAGAGGATAGTGAGGACGC
GCTGAGAAGGTTGTTGTCGTTGCTATCAGGTGAGCAGAGGGCGTCTCCGA
GTTGACTGACGCACACAGGGTGAGCTCTCGCGTCCCCGTGACACTCGTTT
CAAATCTACGTTGTACTGCTCCTGCTGCTGCTGCTGAAGCTGTACACACA
TCCTGTTGCTGTCCTTGTATAGTACGCGAAAGTCCTCTGTCTAGTCCCTC
TACTCGTCCTCAACAAAGTCACCGAACCTTGTAAACATGTGGCATATCTT
GGCCAAAGTCAAAAAGTGGAAGCAGTGGAAGCATTTTACAGCAGCACATC
GTTTCATCGTTGTGGTATATACGTAAGATAACACGGTAGCAGTACTTATG
GAATGCATCTACTTGAAGAACATGTAACATGTTGTATCGTCTCTCGTCGT
ATATAACCACAGCCACCTCGCCTAGGCATTACTTCCTTTGGCCCCCCTAT
CCTGTTACCACTTTCACAGCTGCTGTTCGAATAAATATGTTTTGTGTTCA
GAGTATTATGGTTGGATAGCACCCGCTTGCAACACCGGCCAGGGCGATAC
CACTGCTACATACCACTCCATAGTAGTATTTGTAGTATTTCGGGCCGAAA
GCTATCGTGATCTCGGGATGAGCTTACAATATTGTCCGCCACTGCTACCG
ACCGCCACCCTCGGCTACGAACACGCGCAGGAGGCTTTTCACTGCAATCA
ATACGCCCTTCACGGACTGATCTTACTCTCGCAATACACTTGATCATTTG
TTAGACCCACCCTTACATTCAACCACGAGGCAGCCTTGCTGTAGGCTGAT
GCTTGGGGTTCTCGGTTGCCAACAACTGGTGTTGTCTACAAACCTTCCGG
GTTTGCACCACGATGTCGTGCAGCATTGCCGTCATCTCAGTATTCTCGAT
GCCGTAACCTGTCTGTCCACCCGCTCGGACAGGGCACCCCGCAATGAGGG
CGCTATGTTTTCTTCCTTCCAATGCGGGGGTGGGGCTCCAGGCGGGGATG
GGTTTCCAAGCAACGGCGTTCTCCTCCCCGATCCGCGCGAACAAACCGCT
TCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTTG
GCGTGGGGGGCTGGTTGTCGTCACCACCGAGAGCAATATCAAGAACAAGC
AGCTCCCGCCGACGCCCTCACCGGCCGTATGCCTCGCTGTTTGACTCTGG
CGACGAGAACAATGCCCGGGACGACTCCCCTAACCCTGGCAACGCCGACT
CTCAGGGAGAAGCCCCAGAATCAGAGAGCGCCCCATCCTCGCCGGACGGC
GGGGCGAAGCCGGTGCCTCGAGCCGACGAGCAATTGACGGGGAGTCTAGC
CGACGCCGGTGCTACGGGGGAGGGCCCACCACAAGCGGAGGGCGAAGCAG
CTGCGGCGGGAGAGGGCGCAGAGGAGGAGCAAGTAGACTGGGACAAGGCC
TGGGCGAGCACCCGGCAAAGAATGGAGCGGGAGAAGAGGGCGGCCCCGGC
GTTTTCGGGCCGGAAGCAGGTCGTGGCTACCAAGAACGAGGACGGGGGTT
ACGATTTCGAGGAGATTTCGGCGGACGGGTCTAGCAGGATGCGGGGTGAC
AAGGGGAGAGGGGGGTTTGGGTTCGCCGACAGTAACCAGGTGGAGGACGG
GCCGGGGGGCATCCGCCGGAAAGAGCAAGAAGCCGTCAACTTCGCCACTA
CGAACCAGGTGCGGATAAGGTAGACACCCTTGACATTTGGACCACGGGTG
TGGGTCATGTGCACACGGCATGGAGTGAATAGTGCGGTGGTGTTTAACTT
TCTGTCCCGGGTGTTGCTTGTAGACGACGTCCTGGTCGAATGGAAGCAGA
TCCTTGTTTGCCACGACGATGTTGCCCCCCGCCACATACGGATGACGTCA
TACCGTTTTTCGTGGGTCGCACCATCGCCTCTTCTACAACCCTTGGCGTC
TGGCGGTGACGCAGCCCTCCCGTTTGGGGAAGGGGTCTGAGCCTCGGCGT
GGCGGTACAGTTGCCGTTGATTCCACATGAAGGAAAACAGGCTGGTCGAT
GCCGATACTTCCCCATCAATAACACAAGCAAATAAAGAGAGGAAAACAGA
GCAAAGCACTTGCCGAGTGCAAAACACGGACTGGGAAAATAGTACACACA
AGGATTTACCATGGTATGCGACCAAGCCGAAAGGAGCTATATCTCTTTGC
ACCCACACACCAGTCAAGATTGCGTGAATCGGTCGGGTTTTCGCCGTCCT
GGCCAATCATCACCCTAACCGGGGTCGGATTTTCGCTGGCCTGGCCAATC
ACCACCCTGCGTTTGAAAGATCATCTCGCTGACAAGCGACGGCCTTGTAC
ACCCTTGTGTTATCGTTCCCCAGGCGTTCGCGGGCTTGTTTGCCATCCTC
CTGGCGTCCCTGATCTTCGAGGTGTACGTCTACATGTCTGGAGGGATCAC
CAATGGGTCGACGCGGTTCCAGGACATGGGCCAACCCACGTGAGTGCGTC
AATTCTTGTGCGCCGCCGGTAAGCAGCGATGGTCTGGCGTGCGAGAATGT
TTTCTGAAGCCGCATGAAAAGCGAGCGTGCTCAGGTTTCGGCAGCATTCG
CACGATCCATTGCCTCGCTCACCGCCATCTCTTTTACTTTTATGGGCGGA
GGATGCGCCAATGCTGCCGGACGACCATATCACGACTGCAAGTGATCTCG
CCCCATTGGCTTACACTCGCATAAGAACGTGCTTGTCCAAGACGTGAAAT
ATGTGGCTATATTTGTTCCTGGACAACACGCCGTGCTGCTCCATCACGTT
TAGACGTACAGCCGGTTGCAAGTGCGTGCGTCGGGCCTCAAAGTCGCCTA
TATGTCATGATTTTTCAAGGTGCTCGTGTCGTTGATCATGGCTGCCCTGG
TCTGTTTTGCGACCGGCTACGTTAGGTCGGTGTCTCGCCTCTCGCCGATA
TGCCCTTGGATATGTAGGAGAAGTTGTAGCATGCGTGTACTTCGAGGCGA
ACGTCATGCCAAACTCATCTACTCTTCCTCCCGATCCCCCCACGCCCACC
CGCCAATCGGCAACAGAACGTACGACGCGTTGCCATTACCGGCGACCCCA
CCGACGGACTCGGATTTGGTCGTGTGAAGTTGATGGGGGCAAAACCTGGC
GCGGGTGATGACATCAGCAATCGCGCAAAGGCAAACAAGGAGCCGGCGGG
TGCGGCAAACATGTCTAGAACTGCCCCCAAGAATCCCTGGAATTTTCAGG
AAGCGCTGCGAGAGGGGGGGGGCGGCACGGGTCAAACACGACCTTTGTGC
GATATCAGGTTCCGTGTTGCAGTGGCATTGGCTGCGGGAGGACCCACCCG
GTGTTGTGGGTAAAAAATGATGCAGGGTCTGGGGTTCCGTTGCACCGACA
GCGTTTTCTATATGTGGCGGGAGTTGATGTACATATTTGGGGGGGACTCT
GTAAACTTGCACGGTTGCGGACGAAGGAATTTCTTGTAGAGTGGTGGTGG
CAGATGGTGCTGTCGGGCATGCGCCCTCGGTTTGACGTTCCAGTTTTGAC
GAAGCCCGCCATGGTCTAGATAGCACTATCTGCTGCGTGGCTTGTGGTAT
AGGCGCGAAAATGCCCCAGCTTGGGATGCATGTATCAATCCATAATTTTG
TCGTTTGT back to topCoding sequence (CDS) from alignment at chr_27:5835752..5839909- >Ec-27_006320.1 ID=Ec-27_006320.1|Name=Ec-27_006320.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=942bp|location=Sequence derived from alignment at chr_27:5835752..5839909- (Ectocarpus species7 Ec32 male_plus_femaleSDR) ATGAGGGCGCTATGTTTTCTTCCTTCCAATGCGGGGGTGGGGCTCCAGGC GGGGATGGGTTTCCAAGCAACGGCGTTCTCCTCCCCGATCCGCGCGAACA AACCGCTTCAGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG CCGCTTGGCGTGGGGGGCTGGTTGTCGTCACCACCGAGAGCAATATCAAG AACAAGCAGCTCCCGCCGACGCCCTCACCGGCCGTATGCCTCGCTGTTTG ACTCTGGCGACGAGAACAATGCCCGGGACGACTCCCCTAACCCTGGCAAC GCCGACTCTCAGGGAGAAGCCCCAGAATCAGAGAGCGCCCCATCCTCGCC GGACGGCGGGGCGAAGCCGGTGCCTCGAGCCGACGAGCAATTGACGGGGA GTCTAGCCGACGCCGGTGCTACGGGGGAGGGCCCACCACAAGCGGAGGGC GAAGCAGCTGCGGCGGGAGAGGGCGCAGAGGAGGAGCAAGTAGACTGGGA CAAGGCCTGGGCGAGCACCCGGCAAAGAATGGAGCGGGAGAAGAGGGCGG CCCCGGCGTTTTCGGGCCGGAAGCAGGTCGTGGCTACCAAGAACGAGGAC GGGGGTTACGATTTCGAGGAGATTTCGGCGGACGGGTCTAGCAGGATGCG GGGTGACAAGGGGAGAGGGGGGTTTGGGTTCGCCGACAGTAACCAGGTGG AGGACGGGCCGGGGGGCATCCGCCGGAAAGAGCAAGAAGCCGTCAACTTC GCCACTACGAACCAGGCGTTCGCGGGCTTGTTTGCCATCCTCCTGGCGTC CCTGATCTTCGAGGTGTACGTCTACATGTCTGGAGGGATCACCAATGGGT CGACGCGGTTCCAGGACATGGGCCAACCCACAACGTACGACGCGTTGCCA TTACCGGCGACCCCACCGACGGACTCGGATTTGGTCGTGTGA back to top
Synonyms
The feature 'Ec-27_006320.1' has the following synonyms
Synonym |
Esi0000_0038 |
Esi_0000_0038 |
|