Ec-00_007640.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007640.1
Unique NameEc-00_007640.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length107
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_007640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:12202443..12206095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length321
Hectar predicted targeting categorymitochondrion
Gene idEc-00_007640.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007640Ec-00_007640Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 12202110..12216777 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007640.1.1Ec-00_007640.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12202443..12202454 +
Ec-00_007640.1.2Ec-00_007640.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12204165..12204289 +
Ec-00_007640.1.3Ec-00_007640.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12204529..12204640 +
Ec-00_007640.1.4Ec-00_007640.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12206024..12206095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007640.1CDS:Ec-00_007640.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 12202443..12202454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007640.1Ec-00_007640.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 12202443..12206095 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007640.1 ID=Ec-00_007640.1|Name=Ec-00_007640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=107bp
MYIHRSTPLRSRCFLSWRAARSLIREIFQENGAIGFTGIQTVLKDMTLGT
WCGDSPRRAFLLRVSTVERVTLGTGPAERVLRRDRFGTHPQLVSVSAPID
REKLPS*
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spliced messenger RNA

>Ec-00_007640.1 ID=Ec-00_007640.1|Name=Ec-00_007640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=321bp|location=Sequence derived from alignment at chr_00:12202443..12206095+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACATTCACCGATCCACACCATTGAGGTCGAGGTGCTTCCTAAGCTG
GCGAGCCGCAAGAAGTTTGATAAGGGAGATATTTCAAGAGAATGGCGCGA
TAGGGTTCACCGGCATCCAGACCGTCTTGAAGGACATGACACTAGGGACA
TGGTGTGGCGATTCGCCAAGGAGGGCCTTTCTTCTCCGAGTGTCTACTGT
CGAACGGGTGACTCTTGGGACAGGACCGGCTGAACGAGTGCTTCGTCGCG
ACCGTTTTGGCACGCACCCCCAGCTGGTCAGCGTGTCCGCGCCGATCGAC
CGAGAGAAGTTGCCATCTTAG
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protein sequence of Ec-00_007640.1

>Ec-00_007640.1 ID=Ec-00_007640.1|Name=Ec-00_007640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=107bp
MYIHRSTPLRSRCFLSWRAARSLIREIFQENGAIGFTGIQTVLKDMTLGT
WCGDSPRRAFLLRVSTVERVTLGTGPAERVLRRDRFGTHPQLVSVSAPID
REKLPS*
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mRNA from alignment at chr_00:12202443..12206095+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007640.1 ID=Ec-00_007640.1|Name=Ec-00_007640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3653bp|location=Sequence derived from alignment at chr_00:12202443..12206095+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTACATTCACGTGCGCTCACACACTTTTCATCTCGAGCAGTCAGCCAC
TTTTATTGTCCCACGGTCTGCTTGGTGCATGCCGTTCGCGCCGCGCTCGC
ATGCTTGCACGCTTTCGCACACGTCCGCCTCCAAAATGACGCTGCTGGCA
AATGTTTCCGTTCTTCATCCCTTGGAACGGTGCTAGTATAAGAGGAATGT
ACAAATAAATATAGTTACAGCAGTGTGGTCGCAGAATATATACCAGACCC
CCCGGATCTAAAGCTTGACTGCTGTGCTGTATTAGTCCAACCCCGCACTC
CACAACGAAGTTGGTGCCCTAACGAAATGGTCCGTTTAGACAAGCTGTTT
CAACCCCGTCTGTAGCGGCCTCGTCCGTAAGCGTGCTGCAGACTGTAATC
GCGTGTTGATAATCGGCCCGGGGGGTGTTGTAGCTTATGCGACAGACGTA
CAAACTACTTGTAGACAACTTGCGGTGTCATACATGTATGCATGCAATGC
ATAAGTTTACAATTGAAACTGATGTAAGGTCTCCAAGCCGTGGCTGCTGT
ACTCGCACCCGTTGCATCGAATGTACTTTCGACTTGCGTTATTTCCGCGA
TATTCATAAATTCGGAAATAGGTCAAAACGCGAATGAAAGACTGCGATTT
GTATTGGTCAATTATTCGATCGAAGCGAGATTTATGAACACGCCTGAGGT
CTCGCCGCAATAATTGCTGGCAGTTGGAAAAAACACCGCACAATTAAGAG
GGAACAGGGATTCCGCACTATTATAGCAGTATGCGGGCGGGGGGTATGTA
TGGCGACGAAAGCGGGATGTCGATGGGGGAGGGGGGGGGTGACCGGTAGG
TGAAAGGTTACGTTTTCCCATATAGCGCACAGCAGGTGTAGTATGAAGTG
TGTGGTGTTAGCACTCTGTTTCCGGCCGCGGACGCACACGGCTGACGACA
GTTACATCTATCAGCTGTCGCTCGCTGTTGCGACAGCTAGTCGCTCGTTG
TTGCGACAGCTAGTAGATCTTTGTAGATGGGGCCTCAGTCTCTGTACTAC
CTGCGACGCGTTCAAATGCATTTCGCACGTAGGGTTGTGTGCACCATACC
CGTCGTTTCTACTCTTCCCTACATGTGTGGCAGCACGGCAGATATGACCA
GTTCGTTGCTGTCTGTGTTCATGTACCATAGCTGCTGATGATTCGGCGTT
GCTTTGAACGCCCCTATAATCTCGAGCGATGTACCTCGCCTTCCAAATAG
TTAATTATGTTTAGCCGCACGGATTGTTGGACGCCTCTCGAGTCTCCTGC
TGCGGTGTGAATCAGAAAGCGTGTGTGGTACTGCCCCCCGCAGACCAAAA
GGCTTGCACTAGCCCCTCCGCCTCTCTGCTGCGGTGCGTATATTTTAGCT
CTTTTGTATGACCACCCGTTCTTCGTTTCTTGGAATCCCGCCATTATCGG
AAATTGTTTTCTATCCACGGCCAACCGGCTGTTGAGCAAAGTCGGCATCC
TTTGATCAAACGCGGGCTGCCCGCTGTTTATTGGACACATATCATAACCC
TCCAATCGCCAAGTCGTCCTTTCCATGCCTCTCATGCTTAATCGGCGTTG
AGGTACATTGTACATTGCCCATGTTTCTTGTTCGTGTACTTTGTTGTATT
CGCTGTTAGAAGACCCCACGCAAAGCGCCCCTTTGGGCCCCCTGTTGTTG
TGGTGGCCGAATCTCACGACAGCGATCCACACCATTGAGGTCGAGGTGCT
TCCTAAGCTGGCGAGCCGCAAGAAGTTTGATAAGGGAGATATTTCAAGAG
AATGGCGCGATAGGGTTCACCGGCATCCAGACCGTCTTGAAGGACATGTG
AGCAACGAGAGTATGCATATTTTTTACTGCAGTACCCGCGCTGTTGCCTT
GTGCAATTGCGATGGAAGACAATAGCCTGTTGGGAGTCTGTTCAACTGTC
TGTTTGGGGCAAGATCCGTTTGGGTTATGAAGTAATTGTGTCCTTGGTAA
GGAGTGCATATGCTGTCTTACACAACCGCACGATTCTATTGTTCTTTTTC
GGGGGCGCGCTCTGTGTTGCATGTTGCTAATTCTAGGACACTAGGGACAT
GGTGTGGCGATTCGCCAAGGAGGGCCTTTCTTCTCCGAGTGTCTACTGTC
GAACGGGTGACTCTTGGGACAGGACCGGCTGAACGAGTGCTTCGTCGCGC
AGGTGACCGAATGGGTGTTTCCACGTAGTACTTCACTTTCGTGGCAGATT
TCCCCTGAACACTACCAACCGAGGCCTAACCGCTCCATGGGCAACTTAGA
TTTCTTCCCTCATACCGGAGGAGTAAGCCCGCTGCATTGATTATCTCCCG
AATTCCGACCAATCGCACGTGCCCGCAACGCGACAACACGCACTTTTGTA
TCAGCATAGAAAAGAGGGTGCTTATCCCGATCGATAGTTGTTAGGGAATG
GAGGCTATTGATGCTTCTACTGTGTGACCTGGGACCGTGAAGAGACTAGA
GGACCAACTGTGGTGTTGGTAGAACCAGCGAGAAGTAGTTAGAGAATGCC
TCAGCATCTACAGTACAATGAAAGTGATGATCAGGTTTTTTACTACCCTC
TCAGCTACCCCGCCCATTCTGCCGGAAAAGTGGTAAACACGTTGAAATCC
CCCCCCGGTGTTCTTCATCCGCAAAAATGAGCAACCTCTCCACTACCCTC
GGGGTCGTCGTTGGGTTAGTCAAGGATATCCCAGCCCCCCGGGACGAACG
AAAATTTAACGGGTACACCTCGGGAAAATTCCCGCCGTTTTTTTACCCGC
CGTGGTGGACGGTCATCCCCGCACTGGCGGTAATTGCCGCCACATTCGGT
GGTACCGGGAACCACCGAAGGCGTTACCGCCGAAAAACGAAATACCGCCT
ACCGCCTAAAAAGTACCGCCATATTGCAGTACCGCCGAAGAAGTACCGCC
AAAAAACGAAGTACCGCGAACCGCCTAAGAACAACCGCCATATTGCAGTA
CCGCCGAAAAAGTACCGCCGTACTGCAGTACAGTCTCCTCTTTGTCAGTT
GCTCGATGGGGTGTGCTATTGTCTTGAGATGGTGAAACCGCACAGAACCA
CAGCTGAACCGAGATACCTACACCTGAAGGTGATCCTTCGCCTCCGCTGT
TAGCCTACATGAACATTATTTGTCGCACACAGCCGCCCCTCACTGGGGTG
TGTCTTCCTCACCCCCCATCGTCGATGCCGCATGTTTTTACCGCCGGCGG
CAAAGACAACCTGGTGCAAAACAAATTTCGAAGTACATTCTTTATCTAGG
GGATGAACGCGTGATGCCGACATTTTGTTCAGGGGCCTGACCCGACCATG
CACTAAGCAGGTGTTAACGCGGAATTTGTTACGGTAGCTCGTGGATAACA
CTTATATTAAACGTGGGTGGAACGGGGTCCGGTGTAGTCGACCATACCAT
AACACACCTACCTTCGGGCAGACGCGGCTGGCTGTGCAGAGCACGCCCTG
TCTCTAAACAGATGATCGACAATCAATCTCATGTGTTAGACAACCAACCT
ACACGTTCGCGCGGCGTCCACATCGTATCAGGACCGTTTTGGCACGCACC
CCCAGCTGGTCAGCGTGTCCGCGCCGATCGACCGAGAGAAGTTGCCATCT
TAG
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Coding sequence (CDS) from alignment at chr_00:12202443..12206095+

>Ec-00_007640.1 ID=Ec-00_007640.1|Name=Ec-00_007640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=321bp|location=Sequence derived from alignment at chr_00:12202443..12206095+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTACATTCACCGATCCACACCATTGAGGTCGAGGTGCTTCCTAAGCTG
GCGAGCCGCAAGAAGTTTGATAAGGGAGATATTTCAAGAGAATGGCGCGA
TAGGGTTCACCGGCATCCAGACCGTCTTGAAGGACATGACACTAGGGACA
TGGTGTGGCGATTCGCCAAGGAGGGCCTTTCTTCTCCGAGTGTCTACTGT
CGAACGGGTGACTCTTGGGACAGGACCGGCTGAACGAGTGCTTCGTCGCG
ACCGTTTTGGCACGCACCCCCAGCTGGTCAGCGTGTCCGCGCCGATCGAC
CGAGAGAAGTTGCCATCTTAG
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Synonyms
The feature 'Ec-00_007640.1' has the following synonyms
Synonym
Esi565_0015
Esi_565_0015