Ec-28_000190.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-28_000190.1
Unique NameEc-28_000190.1
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length273
Homology
BLAST of Ec-28_000190.1 vs. uniprot
Match: D7FIG5_ECTSI (Similar to Leucine rich repeat containing 15, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG5_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 3.860e-58
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
Query:   43 MSDCGLTNDDLDDIRSCLEAAGVSTIVELLLDTNGLTALKPDVSGSSGTFDGMTSLEVLSLSANELTTLPADLFGSLTSLVSLFVDDNSDLTCLPDIPS 141
            MSDCGLTNDDLDDIRSCLEAAGVSTIVELLLDTNGLTALKPDVSGSSGTFDGMTSLEVLSLSANELTTLPADLFGSLTSLVSLFVDDNSDLTCLPDIPS
Sbjct:    1 MSDCGLTNDDLDDIRSCLEAAGVSTIVELLLDTNGLTALKPDVSGSSGTFDGMTSLEVLSLSANELTTLPADLFGSLTSLVSLFVDDNSDLTCLPDIPS 99          
BLAST of Ec-28_000190.1 vs. uniprot
Match: D8LR92_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR92_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 7.080e-15
Identity = 66/218 (30.28%), Postives = 102/218 (46.79%), Query Frame = 0
Query:   22 NSCVDP-SIAGKCTIDGDGSLSMSDCGLTNDDLDDIRSCLEAAGVSTIVELLLDTNGLTALKPDVSGSSGTFDGMTSLEVLSLSANELT-TLPADLFGSLTSLVSLFVDDNSDLTCLPD----------------------------------------------IPSSDMETISRSNTDIFNSVCECVPDESIFCDAGLSCQPGEIGYTCVTATPSP 191
            N C+DP S A  C+++G   + +  CG+T+DDL+D+ +CL+  G  ++  L +  N LT +        G FDG+  LE L L+ N L+ TL A+ F +L  L  L ++ NS LT LP                                               +P+S  + +    T+I + VC C    ++ CD GL+C PGE+G+TC T+ P+P
Sbjct:  179 NPCLDPASEAYLCSVNGT-EIHLDYCGITDDDLEDVETCLDVLGRGSMTALYVRFNYLTTIP------EGLFDGLGHLEKLYLNNNGLSETLSAESFQALGKLQVLNLNGNS-LTALPTDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLRLNPELQCVPASAADNVET--TEISSGVCGCSLAPAVLCDVGLACVPGELGFTCATSAPTP 386          
BLAST of Ec-28_000190.1 vs. uniprot
Match: A0A6H5JSZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.680e-10
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 0
Query:   21 VNSCVDPSIAGKCTIDGDGSLSMSDCGLTNDDLDDIRSCLEAAGVSTIVELLLDTNGLTALKPDVSGSSGTFDGMTSLE 99
            VN C+D + A +C ID +G+LS+  CG+T+ D DD+ SCLEAAG  TI  L L  N LT L        G F G+T+L+
Sbjct:   21 VNVCLDSTDADRCQIDANGNLSLGLCGITDADFDDLASCLEAAGPETITTLYLSHNELTTLP------EGIFGGLTALQ 93          
BLAST of Ec-28_000190.1 vs. uniprot
Match: A0A6H5KAY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY3_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.250e-9
Identity = 36/79 (45.57%), Postives = 45/79 (56.96%), Query Frame = 0
Query:   21 VNSCVDPSIAGKCTIDGDGSLSMSDCGLTNDDLDDIRSCLEAAGVSTIVELLLDTNGLTALKPDVSGSSGTFDGMTSLE 99
            VN C+D + A +C ID DG L +  CG+T+ D DD+ SCLE AG   I  L L  N LT L        G F G+T+LE
Sbjct:  137 VNVCLDTTDADRCEIDADGQLDLYSCGITDADFDDLASCLEDAGPEAITYLSLSQNELTTLP------EGIFGGLTALE 209          
BLAST of Ec-28_000190.1 vs. uniprot
Match: D7FSS0_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS0_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.390e-8
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 0
Query:   22 NSCVDPSIAGKCTIDGDGSLSMSDCGLTNDDLDDIRSCLEAAGVSTIVELLLDTNGLTALKPDVSGSSGTFDGMTSLEVLSLSANELTTLPADLF----GSLTSL 122
            NSC DP         G   + + +CG+ ++DL+D+R C E  G +++  + +++N LT L     G +G F G  SL+ L L  N + TL AD F    GSLTSL
Sbjct:   38 NSCFDPEYDLYGCEPGSTQIDLDNCGIGDEDLEDLRECFENVGRASVTYIAMNSNSLTELP---GGENGLFAGFESLKTLGLVQNNIKTLYADSFEGLGGSLTSL 139          
The following BLAST results are available for this feature:
BLAST of Ec-28_000190.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FIG5_ECTSI3.860e-58100.00Similar to Leucine rich repeat containing 15, part... [more]
D8LR92_ECTSI7.080e-1530.28Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A6H5JSZ2_9PHAE3.680e-1046.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY3_9PHAE4.250e-945.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSS0_ECTSI1.390e-837.14Hypothetical leucine rich repeat protein (Partial)... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 95..118
e-value: 1.6E-4
score: 31.1
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 70..130
e-value: 9.7E-9
score: 34.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 39..190
e-value: 9.0E-14
score: 52.9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..272
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..20
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.563
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 41..138

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:249554..255461 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000190.1Ec-28_000190.1Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_28 248910..255885 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-28_000190.1 ID=Ec-28_000190.1|Name=Ec-28_000190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=273bp
MRLLPCGLAAPFLFGRLAHGVNSCVDPSIAGKCTIDGDGSLSMSDCGLTN
DDLDDIRSCLEAAGVSTIVELLLDTNGLTALKPDVSGSSGTFDGMTSLEV
LSLSANELTTLPADLFGSLTSLVSLFVDDNSDLTCLPDIPSSDMETISRS
NTDIFNSVCECVPDESIFCDAGLSCQPGEIGYTCVTATPSPTPPPTTPPT
PAPVMPPSPAPTPAPLVPTPAPSSPAPTRAPTPAPSPSPIPSFSSSGRAR
ETGCIFWATTAGIFAALFVMNL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf