Ec-27_006800.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ec-27_006800.1
Unique Name	Ec-27_006800.1
Type	polypeptide
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	56

Homology

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BLAST of Ec-27_006800.1 vs. uniprot
Match: D7FSY5_ECTSI (Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY5_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.470e-6
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0

Query:    1 MARFPQQRGLVSALAVGLAMTTRVASF 27
            MARFPQQRGLVSALAVGLAMTTRVASF
Sbjct:    1 MARFPQQRGLVSALAVGLAMTTRVASF 27

[Close]

BLAST of Ec-27_006800.1 vs. uniprot
Match: A0A6H5JBI8_9PHAE (Threonine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBI8_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 7.110e-6
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 0

Query:    1 MARFPQQRGLVSALAVGLAMTTRVASF 27
            MARFPQQRGLVSALAVGLAM TRVASF
Sbjct:    1 MARFPQQRGLVSALAVGLAMATRVASF 27

The following BLAST results are available for this feature:

BLAST of Ec-27_006800.1 vs. uniprot

BLAST of Ec-27_006800.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FSY5_ECTSI	1.470e-6	100.00	Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculo...	[more]
A0A6H5JBI8_9PHAE	7.110e-6	96.30	Threonine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 22..26
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 27..55
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..9
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 10..21
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..26
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..26 score: 0.466

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_27	contig	chr_27:6233595..6233975 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-27_006800.1	Ec-27_006800.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	mRNA	chr_27 6233595..6233975 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ec-27_006800.1 ID=Ec-27_006800.1|Name=Ec-27_006800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=56bp
MARFPQQRGLVSALAVGLAMTTRVASFSHPCGLSVELWVSPACNSSVMLY
KDRTS*