Ec-27_006370.2 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ec-27_006370.2
Unique Name	Ec-27_006370.2
Type	polypeptide
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	435

Homology

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BLAST of Ec-27_006370.2 vs. uniprot
Match: A0A6H5JUF7_9PHAE (GCFC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF7_9PHAE)

HSP 1 Score: 614 bits (1584), Expect = 4.410e-210
Identity = 379/419 (90.45%), Postives = 381/419 (90.93%), Query Frame = 0

Query:    1 MFKARKKDPRRRLASKSKTAEDGASEDEAGNVSDASVGTAPXXXXXXXXXXXXXXXXXXXXXXXXXXADKGVKPVLSFGHEDEEDAGIGVGKAAAGKGADGVFRVKKSKASKAMAKAAKEKTELPVAPQNDSARGSWHTATAGMYTKEGLAELRSSQAFTPKPSGGRSRERMARGGNXXXXXXXXXXXXANERVFAGDEAEMIHEAGQQGDLKEDLNKNDISRLKGRHEALLASREAMGKGAPDSGDGEDFIPLDAKAPVPGARKGLTHDV-NGDGGREDXXXXXXWEEEQVRRGATRPAAKPKPSIPSTSPWGGGSTVATVNGGSGTAGSGWGGTLGERPRFLGIDEMQKALREAGTQLRETHERNERQLQVLVSELATQVAEEKKLSSQEKEAAERFGFFQQTRNALSDLCGMLREK 418
            MFK RKKDPRRRLASKSKTAEDGASEDEAGNVSDASVGTAPXXXXXXXXXXXXXXXXXXXXXXXXXX      PVLSFGH            AAAGKGADG FRVKKSKASKAMAKAAKEKTELPVAPQN+SARGSWHTATAGMYTKEGLAELRSSQAFTPKPSGGRSRERM RGGN            ANERVFAGDEAEMIHEAGQQGDLKEDLNKNDISRLKGRHEALLASREAMGKGAPDSGDGEDFIPLDAKAPVPGARKGLTHDV NGDGGREDXXXXXXWEEEQVRRGATRPAAKPKPSIPSTSPWGGGSTVATVN G GTAGSGWG T GERPRFLGIDEMQKALREAGTQLRETHERNERQLQVLVSELATQVAEE+KLSSQEKEAAERFGFFQQTRNALSDLCGMLREK
Sbjct:    1 MFKTRKKDPRRRLASKSKTAEDGASEDEAGNVSDASVGTAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVLSFGHXXXXXXXXXXXXAAAGKGADGFFRVKKSKASKAMAKAAKEKTELPVAPQNNSARGSWHTATAGMYTKEGLAELRSSQAFTPKPSGGRSRERMTRGGNSSNGGEETASAAANERVFAGDEAEMIHEAGQQGDLKEDLNKNDISRLKGRHEALLASREAMGKGAPDSGDGEDFIPLDAKAPVPGARKGLTHDVVNGDGGREDXXXXXXWEEEQVRRGATRPAAKPKPSIPSTSPWGGGSTVATVNVGGGTAGSGWGETPGERPRFLGIDEMQKALREAGTQLRETHERNERQLQVLVSELATQVAEEQKLSSQEKEAAERFGFFQQTRNALSDLCGMLREK 419

[Close]

BLAST of Ec-27_006370.2 vs. uniprot
Match: A0A835YVY7_9STRA (GCFC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVY7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.260e-6
Identity = 86/332 (25.90%), Postives = 115/332 (34.64%), Query Frame = 0

Query:  134 RGSWHTATAGMYTKEGLAELRSSQAFTPKPSGGRS------------------RERMARGGNXXXXXXXXXXXXANERVFAGDEAEMIHEAGQQGDLKEDLNKNDISRLKGRHEALLASREAM--------GKGAPDSGDGEDFIPLDAKAPVPGARKGLT-HDVNG------DGGR---EDXXXXXXWEEEQVRRGATRPAAKPKPSIPSTSPWGGGSTVATVNGGSGTAGSGWGGTLGERPRFLGIDEMQKALREAGTQLRETHERNERQLQVLVSELATQVAEEKKLSSQEKEAAERFGFFQQTRNALSDLCGMLREKGTSVKGLTRVR 429
            R  W  +TAG+YTKE LA+LRSSQA    P+   +                  ++ M+  G+             +  VF G+EA  + E G++G   +  +   I+R   +H                  GK    +G  E+FIP D   PVPGA    T   V G      DGG    ED      WE +   RGA                                               + + E+++AL  A   LR+  ER  RQL    +EL                A   F  FQ  R  L D+CGMLR K   V  L   R
Sbjct:  273 RRGWKHSTAGLYTKEALAQLRSSQASIVGPAAAAAAADEMDVDDIHTDSYAALQQHMSANGDHAE---------TSGAVFTGEEAAFVQEYGEKGGALD--SPTTIARHMQQHSEARTQXXXXXXXXXXXAGKNGTRAGAAENFIPFDVDTPVPGAGAASTLRSVLGRQMELDDGGGARGEDDEAQAKWEMDVATRGAAXXXXXXXXXXXXXX------------------------XXXXXDAAISVAELKRALDTAAAALRQASERGARQLAAADAELXXXXXXXXXXXXXXXAAGRLFETFQSIRARLGDVCGMLRAKEGMVAQLEAAR 569

The following BLAST results are available for this feature:

BLAST of Ec-27_006370.2 vs. uniprot

BLAST of Ec-27_006370.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JUF7_9PHAE	4.410e-210	90.45	GCFC domain-containing protein n=2 Tax=Ectocarpus ...	[more]
A0A835YVY7_9STRA	8.260e-6	25.90	GCFC domain-containing protein n=1 Tax=Tribonema m...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 345..365
None	No IPR available	PANTHER	PTHR12214:SF0	GC-RICH SEQUENCE DNA-BINDING FACTOR-LIKE PROTEIN	coord: 1..426
IPR012890	GC-rich sequence DNA-binding factor	PANTHER	PTHR12214	GC-RICH SEQUENCE DNA-BINDING FACTOR	coord: 1..426

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_27	contig	chr_27:5864372..5882577 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-27_006370.2	Ec-27_006370.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	mRNA	chr_27 5864222..5884130 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ec-27_006370.2 ID=Ec-27_006370.2|Name=Ec-27_006370.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=435bp
MFKARKKDPRRRLASKSKTAEDGASEDEAGNVSDASVGTAPAPPPSAAAT
GDGQARPKKMRKKSKTKADKGVKPVLSFGHEDEEDAGIGVGKAAAGKGAD
GVFRVKKSKASKAMAKAAKEKTELPVAPQNDSARGSWHTATAGMYTKEGL
AELRSSQAFTPKPSGGRSRERMARGGNSSNGGEETAAAAANERVFAGDEA
EMIHEAGQQGDLKEDLNKNDISRLKGRHEALLASREAMGKGAPDSGDGED
FIPLDAKAPVPGARKGLTHDVNGDGGREDDEEQQRWEEEQVRRGATRPAA
KPKPSIPSTSPWGGGSTVATVNGGSGTAGSGWGGTLGERPRFLGIDEMQK
ALREAGTQLRETHERNERQLQVLVSELATQVAEEKKLSSQEKEAAERFGF
FQQTRNALSDLCGMLREKGTSVKGLTRVRLTCFD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012890	GCFC