Ec-27_005780.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-27_005780.1
Unique NameEc-27_005780.1
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length788
Homology
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BLAST of Ec-27_005780.1 vs. uniprot
Match: D8LB00_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB00_ECTSI)

HSP 1 Score: 506 bits (1303), Expect = 4.120e-165
Identity = 787/787 (100.00%), Postives = 787/787 (100.00%), Query Frame = 0 
Query:    1 MTFRRAAAVTAKGLAQASRGRFANPPPVAATAPPVTDLLATGANTSARISTXXXXXXXXXXXXXXXXXXPAEAKPPHPSSVWETPISNDSAGGLNGDGXXXXXXXXXXXXXXXXXXXXXXFGGMRRRFDFETGAKNLRAXXXXXXXXXXXXXHPWVAARLRRESMRAKKSRTPDFGRRRGPFMRRLQQAGMRRDCDEAERVLRQALECPGVVDTVMCNAVLNTFAADGRWQVVLEVMRQMREAGLTPDALTYTNAIKACGKGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGLPIKAQSYTVAIKACGDAGEGKPAVALLREMQAELSVPPNVXXXXXXXXXXXXXXXXXXXXXXXXXMASMGVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMAPAAGLEPNVFTYNAALMACSCPDGGRWGKALELLEEMAWRGIXXXXXXXXXXXXXXGERGRDEADRVLADMSSGLWEGNDDGGVDASPR 787
            MTFRRAAAVTAKGLAQASRGRFANPPPVAATAPPVTDLLATGANTSARISTXXXXXXXXXXXXXXXXXXPAEAKPPHPSSVWETPISNDSAGGLNGDGXXXXXXXXXXXXXXXXXXXXXXFGGMRRRFDFETGAKNLRAXXXXXXXXXXXXXHPWVAARLRRESMRAKKSRTPDFGRRRGPFMRRLQQAGMRRDCDEAERVLRQALECPGVVDTVMCNAVLNTFAADGRWQVVLEVMRQMREAGLTPDALTYTNAIKACGKGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGLPIKAQSYTVAIKACGDAGEGKPAVALLREMQAELSVPPNVXXXXXXXXXXXXXXXXXXXXXXXXXMASMGVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMAPAAGLEPNVFTYNAALMACSCPDGGRWGKALELLEEMAWRGIXXXXXXXXXXXXXXGERGRDEADRVLADMSSGLWEGNDDGGVDASPR
Sbjct:    1 MTFRRAAAVTAKGLAQASRGRFANPPPVAATAPPVTDLLATGANTSARISTXXXXXXXXXXXXXXXXXXPAEAKPPHPSSVWETPISNDSAGGLNGDGXXXXXXXXXXXXXXXXXXXXXXFGGMRRRFDFETGAKNLRAXXXXXXXXXXXXXHPWVAARLRRESMRAKKSRTPDFGRRRGPFMRRLQQAGMRRDCDEAERVLRQALECPGVVDTVMCNAVLNTFAADGRWQVVLEVMRQMREAGLTPDALTYTNAIKACGKGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGLPIKAQSYTVAIKACGDAGEGKPAVALLREMQAELSVPPNVXXXXXXXXXXXXXXXXXXXXXXXXXMASMGVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMAPAAGLEPNVFTYNAALMACSCPDGGRWGKALELLEEMAWRGIXXXXXXXXXXXXXXGERGRDEADRVLADMSSGLWEGNDDGGVDASPR 787
The following BLAST results are available for this feature:
BLAST of Ec-27_005780.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB00_ECTSI4.120e-165100.00PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 607..779
e-value: 8.9E-45
score: 155.3
coord: 299..453
e-value: 4.1E-37
score: 130.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 464..562
e-value: 4.7E-20
score: 73.7
coord: 182..298
e-value: 8.1E-21
score: 76.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 564..611
e-value: 1.4E-10
score: 41.2
coord: 213..260
e-value: 8.4E-9
score: 35.5
coord: 670..717
e-value: 4.2E-8
score: 33.2
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 411..471
e-value: 6.6E-8
score: 32.5
coord: 271..330
e-value: 5.8E-8
score: 32.7
coord: 341..400
e-value: 0.0047
score: 17.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 215..249
e-value: 6.5E-6
score: 24.0
coord: 567..600
e-value: 2.4E-6
score: 25.4
coord: 392..422
e-value: 4.0E-5
score: 21.5
coord: 251..283
e-value: 3.9E-4
score: 18.4
coord: 603..635
e-value: 2.8E-6
score: 25.2
coord: 673..707
e-value: 0.0029
score: 15.7
coord: 320..354
e-value: 7.2E-5
score: 20.7
coord: 638..670
e-value: 2.4E-4
score: 19.1
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 532..557
e-value: 0.37
score: 11.1
coord: 638..667
e-value: 6.0E-4
score: 19.9
coord: 496..525
e-value: 0.0082
score: 16.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 494..528
score: 8.758
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 635..669
score: 10.633
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 565..599
score: 11.52
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 213..247
score: 11.027
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 318..352
score: 10.545
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 670..705
score: 9.35
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 353..387
score: 7.015
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 283..317
score: 8.912
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 248..282
score: 9.712
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 388..422
score: 11.016
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 458..488
score: 7.421
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 423..457
score: 8.221
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 529..563
score: 7.695
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 706..742
score: 10.556
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 600..634
score: 11.729
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 294..450
coord: 362..522
coord: 586..760
coord: 196..362
coord: 512..713

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5365531..5367894 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_005780.1Ec-27_005780.1Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_27 5365531..5368585 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-27_005780.1 ID=Ec-27_005780.1|Name=Ec-27_005780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=788bp
MTFRRAAAVTAKGLAQASRGRFANPPPVAATAPPVTDLLATGANTSARIS
TSSSSRRSTLAAEQHSAAAPAEAKPPHPSSVWETPISNDSAGGLNGDGGG
TRERKQKNRRKPTPPPRREAFGGMRRRFDFETGAKNLRAAAAAAAAATSP
PPHPWVAARLRRESMRAKKSRTPDFGRRRGPFMRRLQQAGMRRDCDEAER
VLRQALECPGVVDTVMCNAVLNTFAADGRWQVVLEVMRQMREAGLTPDAL
TYTNAIKACGKGREWRRSVALLKEMSAHGVELNSIHYVCAMTACKISGMG
AEAVGLLREMQAAGIEPNVICYNTAIAACGTGGQSEVAVDLLEEMNALGV
RPNTQTCLAAVRAAGDRDRGEQAVSVLRSMSEAGVAAEAKCYAVTIKACG
RGRRWARALELLREMEKNGVEPIVMGYDACIAACGDGKQWEQAVALLREM
PTVGVTPTVVSYSHAIAACGQSYQWKPALELLREMPQEAGINPDAVCYNN
CMTALGRGLQWEMALTLLREMPSVGLPIKAQSYTVAIKACGDAGEGKPAV
ALLREMQAELSVPPNVISYTAAIAACGKGDQWKQALELLREMASMGVSPN
DRTYTAAITACGNSGKWEEALSLLREMPTMGADPNIASYTATIKACGNGG
QWERAVELFRELPSAGITADVQAYNACVQACGNSGAVDQAVELLREMAPA
AGLEPNVFTYNAALMACSCPDGGRWGKALELLEEMAWRGIAPNAVTHESA
LAACGERGRDEADRVLADMSSGLWEGNDDGGVDASPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat