Ec-27_004720.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ec-27_004720.1
Unique Name	Ec-27_004720.1
Type	polypeptide
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	516

Homology

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BLAST of Ec-27_004720.1 vs. uniprot
Match: D8LB95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB95_ECTSI)

HSP 1 Score: 608 bits (1568), Expect = 5.240e-213
Identity = 515/515 (100.00%), Postives = 515/515 (100.00%), Query Frame = 0

Query:    1 MDVGDAAGSTITTDEASAAVAPAFEFAPTPSPPGVLRAIDMLAINSAGSAGXXXXXXXXXPMMDSSETPAPVSGXXXXXXXXXXXXXGGAESVTSAXXXXXESASEEGVYEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDEGRXXXXXXXXSSQSPRWDRAGXXXXXXXXXXXXXXXXXXXDGSPRQTPEPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMFSGQALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSRSRSIETRDGESLAVGATAGGGXXXXXXXXXXXXXXXXXNVNGGNNGLDLARAINAARGVGGMDGGSTGNPMQETPSPYAHLIMEDHAKLLGLATCYLQTYGIPGGEGAILNINQREEMAERQRQAMAAAFALTGANGHALHHAGMGAWNGNAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFSTGYGGRPRSGSRGRAGEGLDRLRR 515
            MDVGDAAGSTITTDEASAAVAPAFEFAPTPSPPGVLRAIDMLAINSAGSAGXXXXXXXXXPMMDSSETPAPVSGXXXXXXXXXXXXXGGAESVTSAXXXXXESASEEGVYEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDEGRXXXXXXXXSSQSPRWDRAGXXXXXXXXXXXXXXXXXXXDGSPRQTPEPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMFSGQALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSRSRSIETRDGESLAVGATAGGGXXXXXXXXXXXXXXXXXNVNGGNNGLDLARAINAARGVGGMDGGSTGNPMQETPSPYAHLIMEDHAKLLGLATCYLQTYGIPGGEGAILNINQREEMAERQRQAMAAAFALTGANGHALHHAGMGAWNGNAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFSTGYGGRPRSGSRGRAGEGLDRLRR
Sbjct:    1 MDVGDAAGSTITTDEASAAVAPAFEFAPTPSPPGVLRAIDMLAINSAGSAGXXXXXXXXXPMMDSSETPAPVSGXXXXXXXXXXXXXGGAESVTSAXXXXXESASEEGVYEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDEGRXXXXXXXXSSQSPRWDRAGXXXXXXXXXXXXXXXXXXXDGSPRQTPEPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMFSGQALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSRSRSIETRDGESLAVGATAGGGXXXXXXXXXXXXXXXXXNVNGGNNGLDLARAINAARGVGGMDGGSTGNPMQETPSPYAHLIMEDHAKLLGLATCYLQTYGIPGGEGAILNINQREEMAERQRQAMAAAFALTGANGHALHHAGMGAWNGNAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFSTGYGGRPRSGSRGRAGEGLDRLRR 515

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BLAST of Ec-27_004720.1 vs. uniprot
Match: UPI0009F1F3A1 (polypyrimidine tract-binding protein homolog 3 isoform X1 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F1F3A1)

HSP 1 Score: 65.5 bits (158), Expect = 1.450e-8
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 0

Query:  225 EPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMF--SGQALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSRSRSIETRDGESL 312
            EPSKV+H+RNVG+ + + DL+ L+  FG V KL +     QAL+Q+  VS A   +++YE   +P I  + +Y+ +S  + + T D  SL
Sbjct:   13 EPSKVIHIRNVGHEINENDLLQLVQPFGVVMKLVILRAKNQALIQMHDVSTAANVLQYYET-VQPSIRGRNIYMQFSSHQELTTTDPNSL 101

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BLAST of Ec-27_004720.1 vs. uniprot
Match: A0A1R3L5K1_ASPOF (Uncharacterized protein n=3 Tax=Asparagus officinalis TaxID=4686 RepID=A0A1R3L5K1_ASPOF)

HSP 1 Score: 67.4 bits (163), Expect = 2.620e-8
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 0

Query:  225 EPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMF--SGQALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSRSRSIETRDGES 311
            EPSKV+HVRNVG+ + + DL+ LL  FG V K+ M     QAL+Q+  VS A A M++Y  + +P +  + VY+ +S  + + T D  S
Sbjct:    3 EPSKVIHVRNVGHEIAESDLLQLLQPFGTVTKVVMLRAKNQALLQMYDVSSAAAAMQYYA-NVQPSVRGRNVYMQFSSHQELTTMDQNS 90

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BLAST of Ec-27_004720.1 vs. uniprot
Match: A0A446K2N1_TRITD (RRM domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446K2N1_TRITD)

HSP 1 Score: 62.8 bits (151), Expect = 6.660e-8
Identity = 31/84 (36.90%), Postives = 52/84 (61.90%), Query Frame = 0

Query:  225 EPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMFSG--QALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSRSRSIET 306
            EPSKV+H+RNVG+ + + DL+ LL  FG + KL M  G  QAL+Q+  +  + + +++Y    +P I  + VY+ +S  + + T
Sbjct:    3 EPSKVIHIRNVGHEITEADLLQLLQPFGSISKLVMLRGKNQALLQMQDIHSSVSALQYYS-GVQPSIRGRHVYMQFSSHQELTT 85

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BLAST of Ec-27_004720.1 vs. uniprot
Match: A0A452Z727_AEGTS (RRM domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452Z727_AEGTS)

HSP 1 Score: 62.8 bits (151), Expect = 8.080e-8
Identity = 31/84 (36.90%), Postives = 52/84 (61.90%), Query Frame = 0

Query:  225 EPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMFSG--QALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSRSRSIET 306
            EPSKV+H+RNVG+ + + DL+ LL  FG V KL M  G  QAL+Q+  +  + + +++Y    +P +  + VY+ +S  + + T
Sbjct:    3 EPSKVIHIRNVGHEITEADLLQLLQPFGSVSKLVMLRGKNQALLQMQDIHSSVSALQYYS-GVQPSVRGRHVYMQFSSHQELTT 85

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BLAST of Ec-27_004720.1 vs. uniprot
Match: UPI00126323E9 (polypyrimidine tract-binding protein homolog 3-like n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI00126323E9)

HSP 1 Score: 62.0 bits (149), Expect = 1.180e-7
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 0

Query:  225 EPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMF--SGQALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSRSRSIETRD 308
            EPSKV+HVRNVG+ + + DL+ L   FG + KL M     QAL+Q+  V  A A +++Y  + +P I  + VY+ +S  + + T D
Sbjct:    3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAIAALQYYA-NVQPSIRGRNVYVQFSSHQELTTMD 87

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BLAST of Ec-27_004720.1 vs. uniprot
Match: A0A7J7MSH2_9MAGN (RRM domain-containing protein (Fragment) n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MSH2_9MAGN)

HSP 1 Score: 60.5 bits (145), Expect = 1.960e-7
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = 0

Query:  222 QTPEPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMF--SGQALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSRSRSIETRD 308
            Q  EPSKV+HVRNVG  + + DL+ L+  FG V KL M     QAL+Q+  V+ A   +++Y  + +P I  + VY+ +S  + + T +
Sbjct:   35 QMSEPSKVIHVRNVGQEIAENDLLQLVQPFGVVTKLVMLRAKNQALLQMHDVASAVNALQYYA-NVQPSIRGRNVYIQFSSHQELTTME 122

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BLAST of Ec-27_004720.1 vs. uniprot
Match: A0A446K2Q3_TRITD (RRM domain-containing protein n=3 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446K2Q3_TRITD)

HSP 1 Score: 62.8 bits (151), Expect = 2.360e-7
Identity = 31/84 (36.90%), Postives = 52/84 (61.90%), Query Frame = 0

Query:  225 EPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMFSG--QALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSRSRSIET 306
            EPSKV+H+RNVG+ + + DL+ LL  FG + KL M  G  QAL+Q+  +  + + +++Y    +P I  + VY+ +S  + + T
Sbjct:    3 EPSKVIHIRNVGHEITEADLLQLLQPFGSISKLVMLRGKNQALLQMQDIHSSVSALQYYS-GVQPSIRGRHVYMQFSSHQELTT 85

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BLAST of Ec-27_004720.1 vs. uniprot
Match: A0A1D1Z4C5_9ARAE (Polypyrimidine tract-binding 3 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z4C5_9ARAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.900e-7
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 0

Query:  225 EPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMF--SGQALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSRSRSIETRDGES 311
            EPSKV+HVRNVG+ + + DL+ L+  FG V KL M     QAL+Q+  V+ A AT   Y  + +P I  + VY+ +S  + + T D  S
Sbjct:    3 EPSKVIHVRNVGHEISETDLLQLVQPFGAVTKLVMLRAKNQALLQMHDVASA-ATALQYYTNLQPNIRGRNVYMQFSSHQELTTMDQSS 90

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BLAST of Ec-27_004720.1 vs. uniprot
Match: D8RQL5_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RQL5_SELML)

HSP 1 Score: 63.9 bits (154), Expect = 3.240e-7
Identity = 33/86 (38.37%), Postives = 52/86 (60.47%), Query Frame = 0

Query:  225 EPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMF--SGQALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSRSRSIETRD 308
            EPSKVLHVRNVG  + + DL+ L+  FG V K+ +     QAL+Q+  V+ A + M++Y    +P +  + VY+ +S  + + T D
Sbjct:    3 EPSKVLHVRNVGQEITESDLLGLVQPFGSVSKMVLLRTKNQALLQMQDVNAAISAMQYYTS-VQPSVRGRNVYIQFSSHQELTTSD 87

The following BLAST results are available for this feature:

BLAST of Ec-27_004720.1 vs. uniprot

BLAST of Ec-27_004720.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LB95_ECTSI	5.240e-213	100.00	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
UPI0009F1F3A1	1.450e-8	38.89	polypyrimidine tract-binding protein homolog 3 iso...	[more]
A0A1R3L5K1_ASPOF	2.620e-8	41.57	Uncharacterized protein n=3 Tax=Asparagus officina...	[more]
A0A446K2N1_TRITD	6.660e-8	36.90	RRM domain-containing protein n=1 Tax=Triticum tur...	[more]
A0A452Z727_AEGTS	8.080e-8	36.90	RRM domain-containing protein n=2 Tax=Aegilops tau...	[more]
UPI00126323E9	1.180e-7	39.53	polypyrimidine tract-binding protein homolog 3-lik...	[more]
A0A7J7MSH2_9MAGN	1.960e-7	38.20	RRM domain-containing protein (Fragment) n=1 Tax=K...	[more]
A0A446K2Q3_TRITD	2.360e-7	36.90	RRM domain-containing protein n=3 Tax=Triticum tur...	[more]
A0A1D1Z4C5_9ARAE	2.900e-7	41.57	Polypyrimidine tract-binding 3 (Fragment) n=1 Tax=...	[more]
D8RQL5_SELML	3.240e-7	38.37	Uncharacterized protein n=3 Tax=Selaginella moelle...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 217..314 e-value: 1.4E-13 score: 52.8
None	No IPR available	PANTHER	PTHR23189	RNA RECOGNITION MOTIF-CONTAINING	coord: 218..316
None	No IPR available	PANTHER	PTHR23189:SF88		coord: 218..316
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 214..306

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_27	contig	chr_27:4173122..4178121 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-27_004720.1	Ec-27_004720.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	mRNA	chr_27 4173122..4178121 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ec-27_004720.1 ID=Ec-27_004720.1|Name=Ec-27_004720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=516bp
MDVGDAAGSTITTDEASAAVAPAFEFAPTPSPPGVLRAIDMLAINSAGSA
GGGSPSSPGSPMMDSSETPAPVSGGGGGGGGAMGVGVGGAESVTSAAAGS
NESASEEGVYEGGSARAASSSESRAGSRRSRDRSSSDDSSSGRSTRQRRA
GGGGGGGGGGGGASGRSSRRSRYRDEGRQHSGGSSVSSQSPRWDRAGGGG
GGASPRRRGGGGGGGGDGSPRQTPEPSKVLHVRNVGYPVVQGDLVALLSC
FGQVEKLKMFSGQALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSR
SRSIETRDGESLAVGATAGGGNFNSNNSGASNGGGGGGNVNGGNNGLDLA
RAINAARGVGGMDGGSTGNPMQETPSPYAHLIMEDHAKLLGLATCYLQTY
GIPGGEGAILNINQREEMAERQRQAMAAAFALTGANGHALHHAGMGAWNG
NAAAAAAAAAAAAAAEAGRHSRGVSGGGGGGGAGGAGGVFSTGYGGRPRS
GSRGRAGEGLDRLRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf