Ec-28_000710.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
Overview
Homology
BLAST of Ec-28_000710.1 vs. uniprot
Match: A0A836CD75_9STRA (NUDIX hydrolase domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD75_9STRA) HSP 1 Score: 202 bits (513), Expect = 1.650e-55 Identity = 104/167 (62.28%), Postives = 126/167 (75.45%), Query Frame = 1 Query: 598 ARRAAVLVPLCNRDGVASLLFTVRSAKVSTHKGQVSFPGGHLEPGEDAVEAALRETREEIGDSLGRVDVLGTCQTLPAITGTPVTPVVAFVRRDVGPLLPKLVLSPDEVESVFTLSLSELLDPSLRTMDDLCGRGQLPAFTAGPQRVWGLTAAITDGVLRNGIVPLL 1098 ARRAAVLVPLCN GV S+LFTVR+A V THKGQV+FPGGH++ GE V+AALRET EE+G+ +G V ++G CQT+PA+TGT VTPVV +V RDV +L L PDEV FT+ L+ LLDP+ R M+ L RG +P F A P R+WGLTA ITDGVLRN +VP L Sbjct: 34 ARRAAVLVPLCNDMGVPSILFTVRTATVPTHKGQVAFPGGHIKAGEGPVDAALRETVEEVGEGIGAVHIVGHCQTVPAVTGTRVTPVVGWVERDVDGCR-RLELCPDEVAHAFTVPLAHLLDPANRGMERLGARGDMPVFMADPHRIWGLTAFITDGVLRNAVVPAL 199
BLAST of Ec-28_000710.1 vs. uniprot
Match: A0A482SM29_9ARCH (CoA pyrophosphatase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SM29_9ARCH) HSP 1 Score: 180 bits (457), Expect = 4.730e-48 Identity = 94/168 (55.95%), Postives = 125/168 (74.40%), Query Frame = 1 Query: 601 RRAAVLVPLCNRDGVASLLFTVRSAKVSTHKGQVSFPGGHLEPGEDAVEAALRETREEIGDSLGRVDVLGTCQTLPAITGTPVTPVVAFVRRDVGPLLPKLVLSPDEVESVFTLSLSELLDPSLRTMDDLCGRG---QLPAFTAGPQ-RVWGLTAAITDGVLRNGIVP 1092 R+AAVL+PLCNR G AS++FTVR+ VSTHKGQVSFPGGH++P E A+EAA+RETREE+GD +G + VLG QT+PAITGT VTPV+A+V DV L L SP EV+ +FT +L+EL +PS RT+ +L +G ++P + + R+WGLTA I D +L N ++P Sbjct: 40 RKAAVLIPLCNRHGQASIMFTVRTQNVSTHKGQVSFPGGHIDPNETAIEAAIRETREELGDGIGIIQVLGVAQTVPAITGTLVTPVLAYVETDVQDLQ-HLTPSPSEVDVIFTRTLAELTNPSYRTIQELERQGVKYKMPVYGGQSEHRIWGLTAMILDPILHNVVMP 206
BLAST of Ec-28_000710.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE) HSP 1 Score: 175 bits (443), Expect = 1.370e-46 Identity = 86/145 (59.31%), Postives = 106/145 (73.10%), Query Frame = 2 Query: 2567 VRALLEHVELEGRVLDCCGAAQDAVYTVLSSHGLRVATNN----LVADTHLDTAADAFVEAYVEETVRPDWVVTSPPYKHAFAILKQAMRVGHMGVAFKLRLTFLEPTKTRGRWLMENAPDRIVKLPRATYRGRGCSSTEAWFTW 2989 V ALL +V+L G VLD CG+A DA+ VL +H L V+TN+ L ADTHLD ++ F + E RPDW+VTSPPY +AF+IL +A+ V +GVAFKLRL+FLEPTKTRG+WL +N P +V LPRATY GR CSSTEAWF W Sbjct: 15 VDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIW 159
BLAST of Ec-28_000710.1 vs. uniprot
Match: A0A0G4EFA4_VITBC (Nudix hydrolase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EFA4_VITBC) HSP 1 Score: 184 bits (468), Expect = 9.820e-46 Identity = 109/218 (50.00%), Postives = 145/218 (66.51%), Query Frame = 1 Query: 460 QNLAAIRKVFSPGPLPLLAGYRLEAFTSAAAHASEILRSERGRSRAARRAAVLVPLCNRDGVASLLFTVRSAKVSTHKGQVSFPGGHLEPGEDAVEAALRETREEIGDSLGRVDVLGTCQTLPAITGTPVTPVVAFVRRDVGPLLPKLVLSPDEVESVFTLSLSELLDPSLRTMDDLCGRGQ---LPAFTAGPQRVWGLTAAITDGVLRNGIVPLLQQ 1104 Q + I + F+P +PLL T AA E L GR+ R+AAVL+PLCNR+GVAS+L T+RS K+S H GQVSFPGGH+E GE ++AALRET EE+G +G + ++GTC+ + A+TGT V PV+ +RRDVG LL + S DEV VFTLS+ +L DPSL+T++ L G +PA+ G +VWGLTA I +GVLR +VP+L Q Sbjct: 263 QAMTQIVQGFTPPQVPLL--------TPTAAKCVEKLA---GRTPPPRQAAVLIPLCNRNGVASVLLTLRSDKIS-HPGQVSFPGGHIERGETPIDAALRETHEELGSRIGDITIIGTCEQVVAVTGTIVHPVIGLLRRDVGELL-WIEKSDDEVADVFTLSIEQLTDPSLQTLEQLPRGGSTYTVPAYLGGVHKVWGLTAFILEGVLRRVVVPVLMQ 467
BLAST of Ec-28_000710.1 vs. uniprot
Match: A0A7S2RJD6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJD6_9STRA) HSP 1 Score: 161 bits (408), Expect = 7.820e-41 Identity = 93/174 (53.45%), Postives = 112/174 (64.37%), Query Frame = 1 Query: 589 SRAARRAAVLVPLCNRDGVASLLFTVRSAKVSTHKGQVSFPGGHLEPGEDAVEAALRETREEIGDSLGRVDVLGTCQTLPAITGTPVTPVVAFVRRDVGPLLP-KLVLSPDEVESVFTLSLSELLDPSLRTMDDLCGRGQLPAFTAGPQ--RVWGLTAAITDGVLRNGIVPLLQ 1101 +RA RRAAVLVPLC G +LFTVRS VSTHKGQVSFPGGH++ E A AALRE EE+G SLG VD++ C +PAITGT VTP++ FV D+GP +L L DEV+ F LS +L DP+LR G +P F + VWGLTA I DGVLR + PL + Sbjct: 82 ARADRRAAVLVPLCTSCGEPGVLFTVRSNAVSTHKGQVSFPGGHMDSHESAPVAALREAWEELGTSLGPVDLIARCSPVPAITGTMVTPIIGFVADDIGPTPHNQLQLCRDEVDRAFFLSFDQLHDPNLRLKRHDKKHGDMPVFHGDDEGAEVWGLTAFILDGVLREFLTPLYE 255
BLAST of Ec-28_000710.1 vs. uniprot
Match: A0A0G4FNC8_9ALVE (Nudix hydrolase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FNC8_9ALVE) HSP 1 Score: 164 bits (416), Expect = 6.390e-40 Identity = 95/172 (55.23%), Postives = 121/172 (70.35%), Query Frame = 1 Query: 601 RRAAVLVPLCNRDGVASLLFTVRSAKVSTHKGQVSFPGGHLEPGEDAVEAALRETREEIGDS-LGRVDVLGTCQTLPAITGTPVTPVVAFVRRDVGPLLPKLVLSPDEVESVFTLSLSELLDPSLRTMDDLCGRGQ----LPAFTAGPQRVWGLTAAITDGVLRNGIVPLLQ 1101 R+AAVLVPLCNR+G AS+LFTVRS+KV THK QVSFPGGHLEPGE +AALRET EE+G L ++++G C + A+TGT V P + + D+G L +L S DEV+ VFTLSL++L DP TM+ + RG+ +P + AGP VWGLTA I GVLR I+P L+ Sbjct: 70 RQAAVLVPLCNRNGEASVLFTVRSSKVRTHKRQVSFPGGHLEPGESGKDAALRETGEELGTGFLKGMEIVGRCDEVEAVTGTIVHPYLGVMCEDLGDLR-RLDPSADEVDEVFTLSLTQLTDPRCYTMETVV-RGKAAYRIPCWRAGPAPVWGLTAFILFGVLRRLIIPFLE 239
BLAST of Ec-28_000710.1 vs. uniprot
Match: A0A7S3H581_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H581_9STRA) HSP 1 Score: 155 bits (392), Expect = 3.730e-39 Identity = 87/180 (48.33%), Postives = 110/180 (61.11%), Query Frame = 1 Query: 601 RRAAVLVPLCNRDGVASLLFTVRSAKVSTHKGQVSFPGGHLEPGEDAVEAALRETREEIGDSLGRVDVLGTCQTLPAITGTPVTPVVAFVRRDVGPLLPKLVLSPDEVESVFTLSLSELLDPSLRTMDDLCGRGQLPAFTAG----------------PQRVWGLTAAITDGVLRNGIVP 1092 ++A+V +PLCNR GVAS+LFTVRS V THKGQVSFPGGHLEPGE + AA RET EE+G ++G + +G CQTLPA T TPV PV+ F+ +DVG S EVE VFT S+ +LLDP+ + + L + P T +R+WGLTA I D VL + P Sbjct: 40 KQASVFIPLCNRHGVASVLFTVRSQHVGTHKGQVSFPGGHLEPGESEIAAAHRETFEELGFTIGNLHTIGNCQTLPAKTLTPVHPVIGFIEQDVGDF-EHFEPSEGEVERVFTRSIEQLLDPAYKRYETLQRDEKSPKVTMPVYGWPDENGDKSSIEYQERIWGLTAMILDSVLAKVVAP 218
BLAST of Ec-28_000710.1 vs. uniprot
Match: A0A4D9D8V8_9STRA (Nudix hydrolase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8V8_9STRA) HSP 1 Score: 150 bits (380), Expect = 6.130e-37 Identity = 91/200 (45.50%), Postives = 116/200 (58.00%), Query Frame = 1 Query: 595 AARRAAVLVPLCNRDGVASLLFTVRSAKVSTHKGQVSFPGGHLEPGEDAVEAALRETREEI-GDS---------------------------LGRVDVLGTCQTLPAITGTPVTPVVAFVRRDVGPLLPKLVLSPDEVESVFTLSLSELLDPSLRTMDDLCGRGQ----LPAFTAGPQRVWGLTAAITDGVLRNGIVPLL 1098 A R AAVL+PLC G ASLL+ +R+A VSTHKGQVSFPGGH+ P E +AALRE EE+ GD +G + +L C+ LPA+TGT V P +A + RDVG L P EV +FTLSL++LLDP+L +DL G G+ +P F GP +VWG TA IT+GVL + + P L Sbjct: 59 APRTAAVLIPLCTAHGQASLLYQIRTASVSTHKGQVSFPGGHILPNEAPAQAALREFYEEMAGDPRGGQGVPQSSTPSDRSHSKADGAAAPRIGPISILAACEPLPAVTGTVVHPFLALLHRDVGDLA-HFSPDPSEVAGIFTLSLAQLLDPALAGREDLEGGGRKRLNVPFFEGGPAKVWGFTAYITEGVLESVLRPCL 257
BLAST of Ec-28_000710.1 vs. uniprot
Match: A0A7R9U5Y6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5Y6_9STRA) HSP 1 Score: 149 bits (375), Expect = 1.150e-36 Identity = 81/160 (50.62%), Postives = 101/160 (63.12%), Query Frame = 1 Query: 601 RRAAVLVPLCNRDGVASLLFTVRSAKVSTHKGQVSFPGGHLEPGEDAVEAALRETREEIGDSLGRVDVLGTCQTLPAITGTPVTPVVAFVRRDVGPLLPKLVLSPDEVESVFTLSLSELLDPSLRTMDDLCGRGQLPAFTAGPQRVWGLTAAITDGVLRN 1080 R AAVL+PLC + + S+LFT R+ VSTHKGQVSFPGGH+E E ALRET EE+G S + LG C+T+PA+TGT VTPV+ ++ D+ + L LS DEVE+VFTL + LL +L M RG LP F VWGLTA I G + N Sbjct: 54 REAAVLIPLCTNERIPSVLFTKRTDLVSTHKGQVSFPGGHVEADESYERCALRETYEELGISPEHITTLGFCETIPAVTGTMVTPVIGLLKPDLTDV--PLTLSEDEVETVFTLPIRALLSDALLEMRKYENRGTLPVFHGADHEVWGLTAMILHGFVEN 211
BLAST of Ec-28_000710.1 vs. uniprot
Match: A0A1F9G0N1_9DELT (Nudix hydrolase domain-containing protein n=1 Tax=Deltaproteobacteria bacterium RBG_16_71_12 TaxID=1797848 RepID=A0A1F9G0N1_9DELT) HSP 1 Score: 138 bits (347), Expect = 2.990e-33 Identity = 84/163 (51.53%), Postives = 104/163 (63.80%), Query Frame = 1 Query: 604 RAAVLVPLCNRDGVASLLFTVRSAKVSTHKGQVSFPGGHLEPG-EDAVEAALRETREEIGDSLGRVDVLGTCQTLPAITGTPVTPVVAFVRRDVGPL-LPKLVLSPDEVESVFTLSLSELLDPSLRTMDDLCGRGQLPAFTAGPQRVWGLTAAITDGVLRNGI 1086 +AAVLVPL +RDG ++LFT R+ V THKGQVSFPGG +EP ED V ALRE EEIG + G V+VLG + +ITG VTPV+ ++ G L +L L PDEV+ F L+L EL+DP R L G + P F AGP +WGLTA I D VLR + Sbjct: 39 QAAVLVPLGHRDGAPAILFTKRTDTVGTHKGQVSFPGGRMEPSDEDEVACALRELHEEIGLAPGDVEVLGPFHDMMSITGLRVTPVLGWI----GALDEARLSLRPDEVQQAFALTLDELVDPDKRATQML-GELRAPYFAAGPHPIWGLTALILDEVLREAL 196 The following BLAST results are available for this feature:
BLAST of Ec-28_000710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-28_000710.1 ID=Ec-28_000710.1|Name=Ec-28_000710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=290bpback to top spliced messenger RNA >Ec-28_000710.1 ID=Ec-28_000710.1|Name=Ec-28_000710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3361bp|location=Sequence derived from alignment at chr_28:666890..674148+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. ATGTCGGCAGCTTGTGACGGCCTGAGAAAGATTCGTGGTTTCTCTCTGATback to top protein sequence of Ec-28_000710.1 >Ec-28_000710.1 ID=Ec-28_000710.1|Name=Ec-28_000710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=290bp MHLYGRAPFTFNEQNLAAIRKVFSPGPLPLLAGYRLEAFTSAAAHASEILback to top mRNA from alignment at chr_28:666890..674148+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-28_000710.1 ID=Ec-28_000710.1|Name=Ec-28_000710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=7259bp|location=Sequence derived from alignment at chr_28:666890..674148+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at chr_28:666890..674148+ >Ec-28_000710.1 ID=Ec-28_000710.1|Name=Ec-28_000710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=870bp|location=Sequence derived from alignment at chr_28:666890..674148+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-28_000710.1' has the following synonyms
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