Ec-28_000680.5 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000680.5
Unique NameEc-28_000680.5
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length220
Homology
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BLAST of Ec-28_000680.5 vs. uniprot
Match: D7G9E8_ECTSI (Two component sensor histidine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E8_ECTSI)

HSP 1 Score: 348 bits (894), Expect = 3.310e-105
Identity = 173/184 (94.02%), Postives = 174/184 (94.57%), Query Frame = 2 
Query: 1925 PYRRLRASMVCTARVGFRWRVDQDLPEVVGDERALEEALSNVVENALKFCKMGRGEGGKDGGVRATVVLRARLSAEPEWGAESGVVIEVVDNGPGIEAEDMPYIFDRGYRGRQPLQCGIPGTGLGLGIARDTMRSFGGDLEVVNMKRDTDGDGGAGGGLKDGGWGTGVKLYLPRGERRTSEGGG 2476
            P  R   +     RVGFRWRVDQDLPEVVGDERALEEALSNVVENALKFCKMGRGEGGKDGGVRATVVLRARLSAEPEWGAESGVVIEVVDNGPGIEAEDMPYIFDRGYRGRQPLQCGIPGTGLGLGIARDTMRSFGGDLEVVNMKRDTDGDGGAGGGLKDGGWGTGVKLYLPRGERRTSEGGG
Sbjct:  297 PVTRAAQAAAKERRVGFRWRVDQDLPEVVGDERALEEALSNVVENALKFCKMGRGEGGKDGGVRATVVLRARLSAEPEWGAESGVVIEVVDNGPGIEAEDMPYIFDRGYRGRQPLQCGIPGTGLGLGIARDTMRSFGGDLEVVNMKRDTDGDGGAGGGLKDGGWGTGVKLYLPRGERRTSEGGG 480
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BLAST of Ec-28_000680.5 vs. uniprot
Match: A0A6H5JWW5_9PHAE (Histidine kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW5_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 1.030e-82
Identity = 137/148 (92.57%), Postives = 138/148 (93.24%), Query Frame = 2 
Query: 2030 EEALSNVVENALKFCKMGRGEGGKDGGVRATVVLRARLSAEPEWGAESGVVIEVVDNGPGIEAEDMPYIFDRGYRGRQPLQCGIPGTGLGLGIARDTMRSFGGDLEVVNMKRDTDGDGGAGGGLKDGGWGTGVKLYLPRGERRTSEGG 2473
            +EALSNVVENALKFCKMGRGEGGKDGGVRATVVLRARLS EPEW AESGVVIEVVDNGPGIEAEDMPYIFDRGYRGRQPLQCGIPGTGLGLGIARDTMRSFGGDLEVVNMKRDTDGD       KDGGWGTGVKLYLPRGERR SEGG
Sbjct:   19 QEALSNVVENALKFCKMGRGEGGKDGGVRATVVLRARLSVEPEWAAESGVVIEVVDNGPGIEAEDMPYIFDRGYRGRQPLQCGIPGTGLGLGIARDTMRSFGGDLEVVNMKRDTDGDXXXXXXXKDGGWGTGVKLYLPRGERRRSEGG 166
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BLAST of Ec-28_000680.5 vs. uniprot
Match: A0A6H5JXI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXI6_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 1.990e-68
Identity = 156/255 (61.18%), Postives = 180/255 (70.59%), Query Frame = 3 
Query:  162 MEYPERPPPAWSMDIDGVQMHEHHASSELLLPAAAGQEMNADSPDAVEGGDGDLSAPIVHSSLLLGMITVIKNGNSDGESRPPSARENAAPRDIENARVLWGERTKGCWKQLPGRWGWL-LSSTRSRGGRL*CKSSR*ERLWRSLSTSEESHDGVEDVRQVAAQKAAAG*HA*SRAGEGHYSAADRLVDILLPVDAVLGLLATAVEREREAQMPGMVDPHAAQREDVASTSAXXXXXXXXXXXXXXAVDSTVDGM 923
            MEYPERPPPAWSMDI GVQ HEHHASSELLLPAA G EMNADSPDAVEGGDGDLSAPIV+SSLLLGM+TV KNGN DG++R PS REN+AP++IE ARVLW ER K   + +    G   +   + R   +       + +  SL   +     +    ++  ++            +     +DRLVDILLPVDAVLGLLATAVERERE QM GMVDPHAAQRED A+TSAXXXXXXXXXXXXXX  DSTVDG+
Sbjct:    1 MEYPERPPPAWSMDIHGVQTHEHHASSELLLPAATGHEMNADSPDAVEGGDGDLSAPIVYSSLLLGMMTVFKNGNGDGKARQPSTRENSAPKNIEEARVLWDERDKRLLETIARSVGVAAVLDQKQRWAAVMQVEPLRKVVAESLHQVKNPMTALRTFGKLLLRRLPQDDTLNRELAKDIILQSDRLVDILLPVDAVLGLLATAVEREREVQMSGMVDPHAAQREDFAATSAXXXXXXXXXXXXXX--DSTVDGV 253
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BLAST of Ec-28_000680.5 vs. uniprot
Match: A0A835ZFA0_9STRA (Two component sensor histidine kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFA0_9STRA)

HSP 1 Score: 172 bits (437), Expect = 9.500e-42
Identity = 82/144 (56.94%), Postives = 103/144 (71.53%), Query Frame = 2 
Query: 1925 PYRRLRASMVCTARVGFRWRVDQDLPEVVGDERALEEALSNVVENALKFCKMGRGEGGKDGGVRATVVLRARLSAEPEWGAESGVVIEVVDNGPGIEAEDMPYIFDRGYRGRQPLQCGIPGTGLGLGIARDTMRSFGGDLEVVN 2356
            P  R   ++   +RV FRWRVD DLP V G+ERAL+EA+SN+V+NALK+ +M  G G      R  V+LR RLS + +WGA  GVVIEV DNGPGI+  D+P +F+RGYRG  PL+ G PGTGLGLGIARD MR+ GGD+ + N
Sbjct:  416 PVVRAAEAVAQASRVSFRWRVDDDLPGVYGNERALQEAVSNIVDNALKYVRMRGGAGEAPRDARPVVLLRVRLSTDDDWGASRGVVIEVCDNGPGIDPADLPRVFERGYRGGVPLRSGTPGTGLGLGIARDIMRAMGGDISINN 559
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BLAST of Ec-28_000680.5 vs. uniprot
Match: A0A7S0YP48_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YP48_9CRYP)

HSP 1 Score: 97.4 bits (241), Expect = 3.160e-19
Identity = 53/129 (41.09%), Postives = 80/129 (62.02%), Query Frame = 2 
Query: 1982 RVDQDLPEVVGDERALEEALSNVVENALKFCKMGRGEGGKDGGVRATVVLRARLSAEPEW--GAESGVVIEVVDNGPGIEAEDMPYIFDRGYRGRQPLQCGIPGTGLGLGIARDTMRSFGGDLEVVNMK 2362
            ++ + LPEV GD R L+EA+SN+++NALK+ ++   + G     RA V+L+    A+      AE+GVVI V D+GPG++ E++P +  RG+RGR  L+ G PG+GLGL I  + +   GG L     K
Sbjct:   25 KIAKTLPEVRGDPRILQEAMSNLMDNALKYSQVRERDEG-----RARVLLKVSKLAKSRLPKSAEAGVVITVEDDGPGVDEEELPELCVRGFRGRASLESGTPGSGLGLHIVDELVSVMGGRLSFERAK 148
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BLAST of Ec-28_000680.5 vs. uniprot
Match: A0A7S0UAD8_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UAD8_HEMAN)

HSP 1 Score: 101 bits (251), Expect = 2.720e-18
Identity = 53/136 (38.97%), Postives = 85/136 (62.50%), Query Frame = 2 
Query: 1967 VGFRWRVDQDLPEVVGDERALEEALSNVVENALKFCKM--GRGEGGKDGGVRATVVLRARLSAEPEWGAESGVVIEVVDNGPGIEAEDMPYIFDRGYRGRQPLQCGIPGTGLGLGIARDTMRSFGGDLEVVNMKRD 2368
            + F  ++ + LPEV GD R L+EA+SN+++NALK+ ++   R EG     ++ + + ++RL      G+E+GVVI V D+GPG++ E++P +  RG+RGR  L+ G PG+GLGL I ++ +   GG L       D
Sbjct:  400 IDFEMKIAKTLPEVRGDARILQEAMSNLMDNALKYAQIRTDREEGKARVFLKVSKLAKSRLPK----GSEAGVVIMVEDDGPGVDEEELPELCVRGFRGRASLEAGTPGSGLGLHIVQELVSVMGGKLAFAKAHED 531
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BLAST of Ec-28_000680.5 vs. uniprot
Match: A0A7S1GIQ5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GIQ5_CYCTE)

HSP 1 Score: 88.6 bits (218), Expect = 6.880e-16
Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 2 
Query: 1994 DLPEVVGDERALEEALSNVVENALKFCKMGRGEGGKDGGVRATVVLRARLSAEPEWGAES-GVVIEVVDNGPGIEAEDMPYIFDRGYRGRQPLQCGIPGTGLGLGIARDTMRSFGGDLEVV 2353
            DLP V    ++L+EA+SNV++NALK+  +   +         TV +    S+  E  + + GV I V DNGPGI + + PY+F RGYRG Q  +  +PG G+GLG A+  +   GGDLE+V
Sbjct:   91 DLPGVWVSPKSLQEAVSNVLDNALKYVVLSNPD------PVVTVEMHDLSSSSSESNSRNDGVSIVVRDNGPGIPSSEAPYVFQRGYRGEQTRER-VPGDGIGLGFAQTLIHKMGGDLELV 204
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BLAST of Ec-28_000680.5 vs. uniprot
Match: A0A7S3PA86_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PA86_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 9.940e-16
Identity = 53/126 (42.06%), Postives = 74/126 (58.73%), Query Frame = 2 
Query: 1994 DLPEVVGDERALEEALSNVVENALKFCKMGRGEGGKDGGVRATVVLRARLSAEPEWGAESGVVIEVVDNGPGIEAEDMPYIFDRGYRGRQPLQCGIPGTGLGLGIARDTMRSFGGDLEVVNMKRDT 2371
            DLP V  +  AL+EA+SNV++NA+K+ K+ +    K    R  V +R   +  P+   +SGV I V DNGPGI AE    IF RGYR   P    + G+G+GL IAR+ +R  GG L++V    +T
Sbjct:  260 DLPGVQANADALQEAVSNVIDNAIKYVKLSKPGSRKTANPRPRVRVRLFANKVPD---DSGVTILVEDNGPGISAEGQESIFLRGYR--DPSTQQLDGSGIGLHIARELIRKMGGTLQIVKPDENT 380
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BLAST of Ec-28_000680.5 vs. uniprot
Match: B8HRU0_CYAP4 (GAF sensor signal transduction histidine kinase n=1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) TaxID=395961 RepID=B8HRU0_CYAP4)

HSP 1 Score: 86.7 bits (213), Expect = 5.930e-14
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 2 
Query: 1997 LPEVVGDERALEEALSNVVENALKFCKMGRGEGGKDGGVRATVVLRARLSAEPEWGAESGVVIEVVDNGPGIEAEDMPYIFDRGYRGRQPLQCGIPGTGLGLGIARDTMRSFGGDLEVVNMKR 2365
            LP V  D +AL+EALSN+++NALK+   G    GK       VV++  LS +P   A+    + + D+GPGI A+D+P+IF+R YRG Q  +  +PGTGLGL IAR  +    G +EV++  R
Sbjct:  301 LPPVTVDPQALKEALSNLIDNALKYTPAG----GK-------VVIK--LSRDP---AQQQQCLTISDSGPGIPAQDLPHIFERHYRGVQ-AEGKLPGTGLGLAIARHLIEQMQGRIEVISPAR 406
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BLAST of Ec-28_000680.5 vs. uniprot
Match: A0A3M1N368_9CHLR (PAS domain S-box protein n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A3M1N368_9CHLR)

HSP 1 Score: 85.9 bits (211), Expect = 2.720e-13
Identity = 61/193 (31.61%), Postives = 86/193 (44.56%), Query Frame = 2 
Query: 1865 KLEVSSSGHYLYPSGWRVSLPYRRLRASMVCTARVGFRWRVDQDLPEVVGDERALEEALSNVVENALKFCKMGRGEGGKDGGVRATVVLRARLSAEPEWGAESGVVIEVVDNGPGIEAEDMPYIFDRGYRGRQPLQCGIPGTGLGLGIARDTMRSFGGDLEVVNMKRDTDGDGGAGGGLKDGGWGTGVKLYLP 2443
            +LEV  +   + P    + L     R  M  + +  F   +  +LP+V GD   L  AL NV++NALK+   G            T+ L A           S +VI + D G GI  +D+PY+F+R YRGR   Q  I G GLGL IA+  +   GG L + +  +                 GT V+LYLP
Sbjct:  561 RLEVQRNSVLMQPQSMTILLQQLCSRVRMQLSEQQHFEAYIAPNLPKVNGDSALLARALENVLDNALKYTSSG------------TIALCAEQHG-------SQIVISISDTGMGIPPDDLPYVFERFYRGRAVGQSNIAGIGLGLTIAKTIIELHGGTLYLQSTPQ----------------VGTQVRLYLP 718
The following BLAST results are available for this feature:
BLAST of Ec-28_000680.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9E8_ECTSI3.310e-10594.02Two component sensor histidine kinase n=1 Tax=Ecto... [more]
A0A6H5JWW5_9PHAE1.030e-8292.57Histidine kinase domain-containing protein n=1 Tax... [more]
A0A6H5JXI6_9PHAE1.990e-6861.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZFA0_9STRA9.500e-4256.94Two component sensor histidine kinase n=1 Tax=Trib... [more]
A0A7S0YP48_9CRYP3.160e-1941.09Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S0UAD8_HEMAN2.720e-1838.97Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S1GIQ5_CYCTE6.880e-1641.32Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3PA86_9STRA9.940e-1642.06Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B8HRU0_CYAP45.930e-1443.09GAF sensor signal transduction histidine kinase n=... [more]
A0A3M1N368_9CHLR2.720e-1331.61PAS domain S-box protein n=3 Tax=Chloroflexi TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:636060..642891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score348.2
Seed ortholog evalue2.8e-93
Seed eggNOG ortholog2880.D7G9E8
Length3418
Hectar predicted targeting categoryother localisation
Gene idEc-28_000680.5
EggNOG free text desc.Histidine kinase-like ATPases
EggNOG OGs2CYMS@1,2S572@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000680Ec-28_000680Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 634809..642891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000680.5Ec-28_000680.5Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 639326..641957 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000680.5.1Ec-28_000680.5.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 636060..636199 +
Ec-28_000680.5.2Ec-28_000680.5.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 636481..636815 +
Ec-28_000680.5.3Ec-28_000680.5.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 637272..637400 +
Ec-28_000680.5.4Ec-28_000680.5.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 637785..637892 +
Ec-28_000680.5.5Ec-28_000680.5.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 638214..639468 +
Ec-28_000680.5.6Ec-28_000680.5.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 639843..639912 +
Ec-28_000680.5.7Ec-28_000680.5.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 640801..640940 +
Ec-28_000680.5.8Ec-28_000680.5.8Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 641651..642891 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0006805UTR:Ec-28_000680.5Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 636060..636199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000680.5CDS:Ec-28_000680.5Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 639326..639468 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0006803UTR:Ec-28_000680.5Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 641958..642891 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000680.5 ID=Ec-28_000680.5|Name=Ec-28_000680.5|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=220bp
MAPLSLQELEPQPRPKLEVSSSGHYLYPSGWRVSLPYRRLRASMVCTARV
GFRWRVDQDLPEVVGDERALEEALSNVVENALKFCKMGRGEGGKDGGVRA
TVVLRARLSAEPEWGAESGVVIEVVDNGPGIEAEDMPYIFDRGYRGRQPL
QCGIPGTGLGLGIARDTMRSFGGDLEVVNMKRDTDGDGGAGGGLKDGGWG
TGVKLYLPRGERRTSEGGG*
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spliced messenger RNA

>Ec-28_000680.5 ID=Ec-28_000680.5|Name=Ec-28_000680.5|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3418bp|location=Sequence derived from alignment at chr_28:636060..642891+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GCCGCCCAGCACCAGCGGCGAGGCAATGGTGGGGTCGCCTGAGTTCGTGA
GCCTGGTCAAGGCTCAGTTCGAGGTGCTCGCCACGGTGCTGGGAGCGGAT
CGGGTCGTGCTGTATGCGAGAAGAGAGAGCACCGAAACAGGTTCCTTGGA
GTTTGTTCCTGCCATGGAGTATCCCGAGAGGCCGCCGCCTGCGTGGAGCA
TGGACATTGACGGTGTCCAGATGCATGAGCACCATGCTAGCAGCGAGCTG
TTGCTCCCGGCAGCCGCCGGGCAGGAGATGAATGCCGACTCCCCCGATGC
GGTGGAGGGAGGCGACGGTGACCTGAGCGCTCCCATCGTGCATTCCTCTT
TACTGCTGGGAATGATTACCGTTATTAAGAATGGGAACAGCGACGGTGAA
TCTAGGCCGCCTTCAGCACGGGAGAACGCTGCCCCGAGGGACATCGAAAA
TGCTCGAGTTTTGTGGGGCGAGCGGGACAAAAGGCTGCTGGAAACAATTG
CCAGGTCGGTGGGGGTGGCTGCTGTCCTCGACCAGAAGCAGAGGTGGGCG
GCTGTGATGCAAGTCGAGCCGCTGAGAAAGGTTGTGGCGGAGTCTCTCCA
CCAGGTGAAGAATCCCATGACGGCGTTGAGGACGTTCGGCAAGTTGCTGC
TCAGAAGGCTGCCGCAGGATGACACGCTTAATCGAGAGCTGGCGAAGGAC
ATTATTCTGCAGTCTGACCGCCTCGTGGACATTCTTCTGCCAGTAGACGC
GGTGCTCGGCCTGCTAGCCACGGCCGTTGAACGAGAGCGAGAGGCGCAGA
TGCCAGGCATGGTGGACCCACATGCGGCCCAGAGGGAGGATGTCGCATCC
ACTTCCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCATCTTC
CGCGGTGGATAGCACCGTCGACGGTATGGGTGTAACGGCAACACAGGATT
TGCAGTGGAGGTCTCCCACTGTGCCTTAGCACCTAGTTTTGTCCTGTGCA
TTGGGGGAGGGGTTCAACAGCAACACGTTCCGCCTGTATCTTGGAAAATA
TTCGTAAGGGCTCGCGTGTTGTTCAGTTTTCCGCGACGACGTACCGGAGT
GGTGAAAGTCCGTGTTCCCGCTCGGGCTGTTGTCGCGTTTTGTCCGCGGC
AGGGGTGCAGGACGCTCTGCTGTCGCCACCAGCCCCGACCGGGATGGAGG
AAACGGTGGCGTACGAGATGATGCCGTTCGGGCTTCTCTCCGTGGAAGAC
GTGATCCAGCCGGTTACTAGGGCGGCGCAAGCGGCCGCCAAGGAAAGGTG
CGGCGGAATGTCAAAAGGCAGCTAGAAGCAACCGGAACAGCGGTGTGGTG
GTGGTGGTGATGGTACCTTTCGTAGAGGTGCTAGGGAGCCAGCCCCCAGG
GGTGCAAACAAGGTTATCCGGCCTACATCTTACCAGGTGCCAATTTCGGA
TTATGTAAAATCTTACCAGGGCCCTGTCCCACGTCCAACTCGGGTGTCCT
CCCCGTTCGCAAGGTATCGGGTGTGGGAATTTCGTCCGTACCCTCCGTGC
ATTACGTCTCATGATTGCACGTACGTGTGCCACTGATGGCGCGGTACGCG
CCCCTGCCATGCTTTGTGCGGGTCACGCTGCACTACTACGTTGTTGTGTT
CGTCGCGCGATCGTGGCTGCGGTTACACATCGGGTGTGAGTTTGTTATTG
TACAGCTAGCGCCCGCACTTGAATGACTTGGCAGTTAACCACCCACAATG
CTCACTATTGCATCAAAACATATGAACTTGAGCACGATTTGTGACCCCGA
TTAAGAACCCATACACTAAGAACCATGGCACCCCTATCCCTACAGGAACT
AGAACCCCAGCCTCGACCAAAACTAGAGGTTTCATCAAGTGGGCACTATC
TGTATCCTTCCGGCTGGCGTGTTTCCCTGCCCTACCGGCGGCTGCGTGCT
TCCATGGTCTGCACTGCGCGGGTCGGCTTCAGGTGGCGGGTGGACCAAGA
TCTTCCCGAAGTCGTTGGCGACGAGCGGGCCTTGGAGGAGGCCTTGTCCA
ACGTCGTGGAAAACGCGCTAAAGTTCTGCAAGATGGGGCGCGGCGAGGGC
GGGAAGGACGGCGGGGTTCGTGCGACGGTGGTCTTGAGGGCCCGCCTGAG
CGCGGAACCCGAGTGGGGAGCCGAGAGCGGCGTTGTTATAGAAGTCGTGG
ACAACGGCCCGGGCATCGAAGCAGAAGACATGCCGTACATCTTCGACCGC
GGGTACAGAGGGAGGCAGCCGTTACAGTGCGGCATTCCGGGGACGGGCCT
CGGCCTGGGCATCGCCAGGGACACGATGCGCTCGTTCGGCGGGGACCTGG
AGGTTGTGAATATGAAGAGGGACACGGATGGTGATGGTGGTGCCGGTGGT
GGCTTAAAGGACGGGGGCTGGGGGACGGGGGTGAAGCTGTACCTGCCGAG
GGGGGAACGAAGGACATCAGAGGGGGGGGGATGAAGCCGAACAGTTATTT
AGCGTGGATGGACCGGCGCCATGTATTCGTGGAATTTTGATTGTCGGACT
GCTGGCAACGCATAGATGGGTGGTTGTGCTTGTAGTGGTTCTTGGGGTGA
AGCCGAACGTGGTTATTCTTGTTGGGTGGCGTTGACGTTTTTGTTGTTTG
TTGCGTCGTTTATATGAAATGCCTCTCTTTTTTCTGGGGCAGGAAAACCG
ATTTGTACAGCATTGTTAGTGGTTATTTCGTGGGGTGGATGGGGCGATTC
GCCAGGTACCATCACCTGTTCCGCAATGTGGAGGGCGACACAGGACCCGT
TCCGGGAGGGTACCGCTGATTCTATCTTCGAAGCCAACGCCCACCACGAA
GGAATCGGTGGGTGAAACGAGCTGCCACTCGGTTCGGGGTTCTTAAGGAC
AAAAGTGGTTCGCCGCGTGATCCTCTCTGATACCCTCCCACCCTAGTGGT
CGCGCGCCTCCCCCCCCAAATATGTCGAATGGCTGTGCCGGAACTGTTGT
GCCTTGTCGGTTTTTCTCGAAAGCTGGTGGTGGCGGTTCGCCCGACCCGG
GGGGGCTTTCGTGGACCAAGTTTTGGTACTCTCATTCAGACAACTGCTGT
GCGCTATTAGTGATTGCTTCACAGCATTTTCCACAAGACAGCCGGTTATT
TGGCGACGCCTCTTTGGTACTTTGTGCGTTTGTGCCTGGGGCTTACCCCT
AACAGTGAGAGTCAGTACTGTTGTCGCATTTGTGTTTGTTCAGCGAGACG
AAGTGAGGCCGTTGGCTTTTCCATCCCCCCCTTGTCCACAAACGGTGGTA
CAGGTCCTACAAAATATCCTCCCCATATATTTCTTTAAACGGTAGGGGGG
GGGGGGATCCCCCACACCATATTTATGTCAGTCGTCCGCAAAGTGGCGGC
AAAAGAAGAACCGGCGGC
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protein sequence of Ec-28_000680.5

>Ec-28_000680.5 ID=Ec-28_000680.5|Name=Ec-28_000680.5|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=220bp
MAPLSLQELEPQPRPKLEVSSSGHYLYPSGWRVSLPYRRLRASMVCTARV
GFRWRVDQDLPEVVGDERALEEALSNVVENALKFCKMGRGEGGKDGGVRA
TVVLRARLSAEPEWGAESGVVIEVVDNGPGIEAEDMPYIFDRGYRGRQPL
QCGIPGTGLGLGIARDTMRSFGGDLEVVNMKRDTDGDGGAGGGLKDGGWG
TGVKLYLPRGERRTSEGGG*
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mRNA from alignment at chr_28:636060..642891+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000680.5 ID=Ec-28_000680.5|Name=Ec-28_000680.5|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6832bp|location=Sequence derived from alignment at chr_28:636060..642891+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GCCGCCCAGCACCAGCGGCGAGGCAATGGTGGGGTCGCCTGAGTTCGTGA
GCCTGGTCAAGGCTCAGTTCGAGGTGCTCGCCACGGTGCTGGGAGCGGAT
CGGGTCGTGCTGTATGCGAGAAGAGAGAGCACCGAAACAGGTGAAGACTA
CACGCTGTGAGCGTCCATGATTCGACTCATGCTCCTTCTTTGCTCATGGC
AATCAACCAACACTCGTGCCTGTCGATCGCGGGTTTCGCGATCGGGTTCG
AGATACACCGTCGGTTACTCGCTGAATCTTTCGTTCACATTGAATTTTGA
CTATGGTACCTATACAAAAGTTCCGATGTCACACGGCCCGCTTGCCCTGC
ATGTTCAAGTTGGCCTGCTTACCCCTCGTCGGCTCTCTACCCCTCAACCT
CGGCTGGACGGAACACCACAGGTTCCTTGGAGTTTGTTCCTGCCATGGAG
TATCCCGAGAGGCCGCCGCCTGCGTGGAGCATGGACATTGACGGTGTCCA
GATGCATGAGCACCATGCTAGCAGCGAGCTGTTGCTCCCGGCAGCCGCCG
GGCAGGAGATGAATGCCGACTCCCCCGATGCGGTGGAGGGAGGCGACGGT
GACCTGAGCGCTCCCATCGTGCATTCCTCTTTACTGCTGGGAATGATTAC
CGTTATTAAGAATGGGAACAGCGACGGTGAATCTAGGCCGCCTTCAGCAC
GGGAGAACGCTGCCCCGAGGGACATCGAAAATGCTCGAGTTTTGTGGGGC
GAGCGGGTGAGTGAGTGTGTGGATGAGGATTTTAAAGGCAGACGTTTTGA
ATCAAGCTCTCCATGATTGTTGTCTTTGATCTGTGCATGCAATCGCGTCG
TTTGGAATATAGGGGGTTAACTCGGTTGTCTGCTTGCTGCTCTTGCAACA
GGTGTAGCCTAAAGCTTCAAGAAGCTCATGGGGCATTGCAATTTCGTGAA
CATTGTATCTATTGTTGTAGCGCTTCTACAAATAAAGGTCCGCGCCGTGG
ATGGTTGCCGTCAATCGTTTTAGGGTTCCACTCGAGGCATCGGTCTCGCA
AGTAGTGCCCACTGCACGTCGAGAGTACAATCGATGACACGGACACGCCC
TTTATCGCCGCATGCGTGCGCCTGCGGTAAAGTTCCAAGATCGCTAAGAG
ACAGCAGTAGTCTTCAATCATGCTCGGTTATTTGTGTGTCACATTCGACG
GTGCTGTCCCAGGACAAAAGGCTGCTGGAAACAATTGCCAGGTCGGTGGG
GGTGGCTGCTGTCCTCGACCAGAAGCAGAGGTGGGCGGCTGTGATGCAAG
TCGAGCCGCTGAGAAAGGTTGTGGCGGAGTCTCTCCACCAGGTGAGCCAA
CCTGCGCCGCCCCGTGCCCTCCATGGCGTGTGGCCCGACCCTGATCTGTA
GACGGTGGGAAGCACGGCATGCGTCGCCCGAGTTGGTTGTGTACATGCGT
GCGCTACCCATACATTCCTTTTTTAGCTTCATCTGGGACGACTCTTGGCC
TCTGCGCTTTCGTTGTCAGCTAGGAATACCGTCTCCGCAGGCGTTGCTGT
CATATCGGTGGTGCTGCTGCTGCGGGTATCCCAAGACAATAAGTTGGCAC
CCTTGGTTGCCTTACCATTTGTCACAGCTTACAGAGAAACAGCGAGAGGT
TCATCCCGCCACACGTGAGTGTTCTGTCAGATTCATGTTCGTCGATGACA
AGCGCACTTTACCGTGTGGCACCAGGTGAAGAATCCCATGACGGCGTTGA
GGACGTTCGGCAAGTTGCTGCTCAGAAGGCTGCCGCAGGATGACACGCTT
AATCGAGAGCTGGCGAAGGACATTATTCTGCAGGTATCATATGGGGGCGA
GTGTGGGGGCTTTCGCTACAGTTGCTGTCTATCTCTGCCTGTGCAACACT
TGGTGTTGCGATGGTGTACACTCTAGCTGAAGTTGTTGCGATTCCAGCAT
GAAATCAAGCGCCGAGATGGCAGTATCACGTGTCACACAAAAATAAGTTT
CAAACGTTTGAGCCCTGTGGGCAGCATTGTAGGTGCTTGTGGTTTGCATT
CCTCGTGAGCGTGTACGGTGTGTTCCTGTTTCCTGGTACATTGCGTTTTC
ATCATCCAAACGCCTGCCCCATCTCTTTTTTCTCTGTGCTTTGATGGAGG
CCAGTCTGACCGCCTCGTGGACATTCTTCTGCCAGTAGACGCGGTGCTCG
GCCTGCTAGCCACGGCCGTTGAACGAGAGCGAGAGGCGCAGATGCCAGGC
ATGGTGGACCCACATGCGGCCCAGAGGGAGGATGTCGCATCCACTTCCGC
CGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCATCTTCCGCGGTGG
ATAGCACCGTCGACGGTATGGGTGTAACGGCAACACAGGATTTGCAGTGG
AGGTCTCCCACTGTGCCTTAGCACCTAGTTTTGTCCTGTGCATTGGGGGA
GGGGTTCAACAGCAACACGTTCCGCCTGTATCTTGGAAAATATTCGTAAG
GGCTCGCGTGTTGTTCAGTTTTCCGCGACGACGTACCGGAGTGGTGAAAG
TCCGTGTTCCCGCTCGGGCTGTTGTCGCGTTTTGTCCGCGGCAGGGGTGC
AGGACGCTCTGCTGTCGCCACCAGCCCCGACCGGGATGGAGGAAACGGTG
GCGTACGAGATGATGCCGTTCGGGCTTCTCTCCGTGGAAGACGTGATCCA
GCCGGTTACTAGGGCGGCGCAAGCGGCCGCCAAGGAAAGGTGCGGCGGAA
TGTCAAAAGGCAGCTAGAAGCAACCGGAACAGCGGTGTGGTGGTGGTGGT
GATGGTACCTTTCGTAGAGGTGCTAGGGAGCCAGCCCCCAGGGGTGCAAA
CAAGGTTATCCGGCCTACATCTTACCAGGTGCCAATTTCGGATTATGTAA
AATCTTACCAGGGCCCTGTCCCACGTCCAACTCGGGTGTCCTCCCCGTTC
GCAAGGTATCGGGTGTGGGAATTTCGTCCGTACCCTCCGTGCATTACGTC
TCATGATTGCACGTACGTGTGCCACTGATGGCGCGGTACGCGCCCCTGCC
ATGCTTTGTGCGGGTCACGCTGCACTACTACGTTGTTGTGTTCGTCGCGC
GATCGTGGCTGCGGTTACACATCGGGTGTGAGTTTGTTATTGTACAGCTA
GCGCCCGCACTTGAATGACTTGGCAGTTAACCACCCACAATGCTCACTAT
TGCATCAAAACATATGAACTTGAGCACGATTTGTGACCCCGATTAAGAAC
CCATACACTAAGAACCATGGCACCCCTATCCCTACAGGAACTAGAACCCC
AGCCTCGACCAAAACTAGAGGTTTCATCAAGTGGGCACTATCTGTATCCT
TCCGGCTGGCGTGTTTCCCTGCCCTACCGGCGGCTGCGTGCTTCCATGGT
CTGCACTGCGTAAGCGAGTGTTCCCTGTGTGCTGCGAATATTAATATTTG
TTGTGTACCCCCGTTACCCTGTCGAATGCCCGTGGAAACGTTTGGCCGAG
ATGAAACAACCGAGCTCTTTTCGGTCATTTAGTGGGAGCACCGACGCTCG
CCGTGTCTGTAAGTCGGTTACAAACCTGCCGTGGACGGGCACCGCGACGA
GTGTGCTTATTGATGCGGCGCTTAGACTGCATGCTTTGCCCCTCTTCGAC
ACGTAGCGAGCGTTGCTCTCCTCGACCACGTAGGGTTTGTTTCTTCATGC
TGCCCTACACGCCTCTGCATTTCTTCGGTATAACTATGGAGCGTTGCTTT
CCTCGGTGACACTGTCTTGGTTTCATGTCGCAGGCGGGTCGGCTTCAGGT
GGCGGGTGGACCAAGATCTTCCCGAAGTCGTTGGCGACGAGCGGGCCTTG
GAGGTACGGACGGCACTGCTGCTGCAGTACCGCCGCTCTTATTGTATCGT
CAATCTTGTGTACATAGCACCCTGTGGAGCTTGGAGCTTGGACGTTGTAT
GACAGACCTTTGTCCTTGATTCAGAACTTCCTATGTAGTGTTCTTGTCGA
TTGGCTGTTCGCTGTCTGTCCAAATGCTTTCGTTTGAGAACATACTTCAT
ATGTATATATATTTTTTTCAAAACAAACATTATTTTTCTTTTTGTGTTTC
TTTCCTGGCCTCGACGTCGACGATGATCGAGACCAACGATACTTGACGTC
AACGATGCCCAACATGAATGATGCTTGACATCACCGATCCTTTATATCAA
CGTTCGAATCAATCATGAAAATATCGTCAGTATGTCGCCTTTCGTGTAAT
CCCCTCTCAGTTTTATACGAAGCTTTCCGCCATGAACAGCACCCTGCCCC
ACTGCAACAGTCTGTCGACCATTAGACCGCATGTTGCCGAGACCGACAAT
ACTCAACAATGCACCTGGCCGTTGTGCGATTGTCAACGATGCCCGACATC
AACGATACATCCCAGGTTTTATTGTTGTATGGATTTGTTGGTTAACGGTT
GCATGAAGAAACGTTCGCTAGACATACTGCCCTTCTTTTGCCGTTCCACG
TACACTGTTGAGCTGACACCCAGGTTCGAGGGTAGACGTCTTGCTTCGAT
GTCCTCCTGTTCTCTGCCTGATTGGCTCCTCGACACACGAAGCGCTCGCC
CGGAGGGTGTACTCACGTTTTGGGCGCGCGCGGGGGGGGGTGTCAACCTT
CGGCGCGCGTTGTGCACCACGTCTGGCTTGTCTGTCTGTTGATGTGCTCT
CTGATGCCGTGCCGGCGTTCGTTCGTTCGTTGTGGTTTCAGGAGGCCTTG
TCCAACGTCGTGGAAAACGCGCTAAAGTTCTGCAAGATGGGGCGCGGCGA
GGGCGGGAAGGACGGCGGGGTTCGTGCGACGGTGGTCTTGAGGGCCCGCC
TGAGCGCGGAACCCGAGTGGGGAGCCGAGAGGTGGGCGTCGCACGGCAGT
AGCGAACCGTAGGTTGCATGACGTAAGATATCACGCCCCCTGGACCGGTT
TTTCGAAGCTCGATTACTGGGCAGGAAAAGGCAGCGGCGGTGCCGGTAAT
GGCGGCGTTGGGACCGTCTCGTCGAGAGCTTTCCGAAAACTATCCTTTGA
TTTGTGCGTCCTGTTCGTCGTGGAGTAATCGAGCTTTGAAAATCGGTCCA
GGGCACGTGATATATTTGGCAACCTGTGTAGCTTCAGCGCACACCATAAC
ATTTCGCCGTCACGTCTCACTATATTGTAGCTCGTGGTTGCCTATCTCTT
CTGTATCTGACACACGAGGTTTTTTGTTTGAACAGCGGCCGTCCTCCCGG
TGCATGTGTTCTATGCGGGATAATTCTGCAATGGTGGCTTTGATCCTAGG
CGACATGAACGAGTTGGAGCTGCTCAAGATGTGTACTTCGATATTTCAGG
CGTGCACTGACCCCGTACGACCGGCCGTGCCTGGCGGAACAGCATTCTGG
TTCTAGAGCCTCCGTTCTTACGCAGCAATACGCAACAAGCTCTATCACCT
TTTCCACTTTGCTTAGGGAATACTTTTCCGCGTGTATCATCAGTTTGTTT
TTCGCTCCGTTTCCCCGCCTGGCCTTTCGAACACCTGCTGGGCAACACCC
CAACTATATGTCTTCCACCTGCGCGCTTACTGTTTTCGCAGCGGCGTTGT
TATAGAAGTCGTGGACAACGGCCCGGGCATCGAAGCAGAAGACATGCCGT
ACATCTTCGACCGCGGGTACAGAGGGAGGCAGCCGTTACAGTGCGGCATT
CCGGGGACGGGCCTCGGCCTGGGCATCGCCAGGGACACGATGCGCTCGTT
CGGCGGGGACCTGGAGGTTGTGAATATGAAGAGGGACACGGATGGTGATG
GTGGTGCCGGTGGTGGCTTAAAGGACGGGGGCTGGGGGACGGGGGTGAAG
CTGTACCTGCCGAGGGGGGAACGAAGGACATCAGAGGGGGGGGGATGAAG
CCGAACAGTTATTTAGCGTGGATGGACCGGCGCCATGTATTCGTGGAATT
TTGATTGTCGGACTGCTGGCAACGCATAGATGGGTGGTTGTGCTTGTAGT
GGTTCTTGGGGTGAAGCCGAACGTGGTTATTCTTGTTGGGTGGCGTTGAC
GTTTTTGTTGTTTGTTGCGTCGTTTATATGAAATGCCTCTCTTTTTTCTG
GGGCAGGAAAACCGATTTGTACAGCATTGTTAGTGGTTATTTCGTGGGGT
GGATGGGGCGATTCGCCAGGTACCATCACCTGTTCCGCAATGTGGAGGGC
GACACAGGACCCGTTCCGGGAGGGTACCGCTGATTCTATCTTCGAAGCCA
ACGCCCACCACGAAGGAATCGGTGGGTGAAACGAGCTGCCACTCGGTTCG
GGGTTCTTAAGGACAAAAGTGGTTCGCCGCGTGATCCTCTCTGATACCCT
CCCACCCTAGTGGTCGCGCGCCTCCCCCCCCAAATATGTCGAATGGCTGT
GCCGGAACTGTTGTGCCTTGTCGGTTTTTCTCGAAAGCTGGTGGTGGCGG
TTCGCCCGACCCGGGGGGGCTTTCGTGGACCAAGTTTTGGTACTCTCATT
CAGACAACTGCTGTGCGCTATTAGTGATTGCTTCACAGCATTTTCCACAA
GACAGCCGGTTATTTGGCGACGCCTCTTTGGTACTTTGTGCGTTTGTGCC
TGGGGCTTACCCCTAACAGTGAGAGTCAGTACTGTTGTCGCATTTGTGTT
TGTTCAGCGAGACGAAGTGAGGCCGTTGGCTTTTCCATCCCCCCCTTGTC
CACAAACGGTGGTACAGGTCCTACAAAATATCCTCCCCATATATTTCTTT
AAACGGTAGGGGGGGGGGGGATCCCCCACACCATATTTATGTCAGTCGTC
CGCAAAGTGGCGGCAAAAGAAGAACCGGCGGC
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Coding sequence (CDS) from alignment at chr_28:636060..642891+

>Ec-28_000680.5 ID=Ec-28_000680.5|Name=Ec-28_000680.5|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=660bp|location=Sequence derived from alignment at chr_28:636060..642891+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCACCCCTATCCCTACAGGAACTAGAACCCCAGCCTCGACCAAAACT
AGAGGTTTCATCAAGTGGGCACTATCTGTATCCTTCCGGCTGGCGTGTTT
CCCTGCCCTACCGGCGGCTGCGTGCTTCCATGGTCTGCACTGCGCGGGTC
GGCTTCAGGTGGCGGGTGGACCAAGATCTTCCCGAAGTCGTTGGCGACGA
GCGGGCCTTGGAGGAGGCCTTGTCCAACGTCGTGGAAAACGCGCTAAAGT
TCTGCAAGATGGGGCGCGGCGAGGGCGGGAAGGACGGCGGGGTTCGTGCG
ACGGTGGTCTTGAGGGCCCGCCTGAGCGCGGAACCCGAGTGGGGAGCCGA
GAGCGGCGTTGTTATAGAAGTCGTGGACAACGGCCCGGGCATCGAAGCAG
AAGACATGCCGTACATCTTCGACCGCGGGTACAGAGGGAGGCAGCCGTTA
CAGTGCGGCATTCCGGGGACGGGCCTCGGCCTGGGCATCGCCAGGGACAC
GATGCGCTCGTTCGGCGGGGACCTGGAGGTTGTGAATATGAAGAGGGACA
CGGATGGTGATGGTGGTGCCGGTGGTGGCTTAAAGGACGGGGGCTGGGGG
ACGGGGGTGAAGCTGTACCTGCCGAGGGGGGAACGAAGGACATCAGAGGG
GGGGGGATGA
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Synonyms
The feature 'Ec-28_000680.5' has the following synonyms
Synonym
Esi0098_0022
Esi_0098_0022