Ec-28_000670.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000670.1
Unique NameEc-28_000670.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length176
Homology
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BLAST of Ec-28_000670.1 vs. uniprot
Match: D7G9E7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9E7_ECTSI)

HSP 1 Score: 326 bits (836), Expect = 7.880e-112
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1 
Query:  139 MAGMVGASPHLPSVMAVSVDTLFLVVMMCSLVEVVAGFVMWKTSRVTRTEAALISQRQTLRTGVAKTNYTATFVENSKLKRLLLKAEKDLERIQSARDRRLKSVAKAVRAVRVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRAAGSVGALSIVAMFLFGLVPRLSPSA 663
            MAGMVGASPHLPSVMAVSVDTLFLVVMMCSLVEVVAGFVMWKTSRVTRTEAALISQRQTLRTGVAKTNYTATFVENSKLKRLLLKAEKDLERIQSARDRRLKSVAKAVRAVRVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRAAGSVGALSIVAMFLFGLVPRLSPSA
Sbjct:    1 MAGMVGASPHLPSVMAVSVDTLFLVVMMCSLVEVVAGFVMWKTSRVTRTEAALISQRQTLRTGVAKTNYTATFVENSKLKRLLLKAEKDLERIQSARDRRLKSVAKAVRAVRVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRAAGSVGALSIVAMFLFGLVPRLSPSA 175
The following BLAST results are available for this feature:
BLAST of Ec-28_000670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9E7_ECTSI7.880e-112100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:632846..635478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length668
Hectar predicted targeting categorysignal peptide
Gene idEc-28_000670.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000670Ec-28_000670Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 632846..635478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000670.1Ec-28_000670.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 632846..634910 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000670.1.5Ec-28_000670.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 632846..633037 -
Ec-28_000670.1.4Ec-28_000670.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 633625..633762 -
Ec-28_000670.1.3Ec-28_000670.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 634017..634115 -
Ec-28_000670.1.2Ec-28_000670.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 634812..634994 -
Ec-28_000670.1.1Ec-28_000670.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 635423..635478 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000670.1CDS:Ec-28_000670.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 632846..633037 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0006705UTR:Ec-28_000670.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 634911..634994 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000670.1 ID=Ec-28_000670.1|Name=Ec-28_000670.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=176bp
MAGMVGASPHLPSVMAVSVDTLFLVVMMCSLVEVVAGFVMWKTSRVTRTE
AALISQRQTLRTGVAKTNYTATFVENSKLKRLLLKAEKDLERIQSARDRR
LKSVAKAVRAVRVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRA
AGSVGALSIVAMFLFGLVPRLSPSA*
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spliced messenger RNA

>Ec-28_000670.1 ID=Ec-28_000670.1|Name=Ec-28_000670.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=668bp|location=Sequence derived from alignment at chr_28:632846..635478- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CTGTCGCTGGTCTCTGCTCTCTCTTGCGTGTTGCTGGGCTTCCCTCTTCC
TCAAAGCTACAAACGCGTGACTTAGGCGCTGCAGGGGGAATTTGAACGAC
CGACTGAAAAGCGCGAAATAACCGAGAGAGCGTACACATAATGGCAGGCA
TGGTGGGCGCTTCGCCTCACTTGCCATCGGTCATGGCTGTGAGCGTTGAC
ACCCTCTTTCTGGTGGTGATGATGTGCTCTCTTGTGGAGGTGGTGGCTGG
GTTCGTCATGTGGAAAACATCGAGGGTGACACGAACAGAGGCGGCTTTGA
TATCGCAACGCCAAACCCTGAGGACAGGAGTTGCCAAGACAAACTACACG
GCGACCTTCGTCGAGAATTCCAAGCTCAAACGCCTCTTGCTTAAGGCGGA
GAAGGATCTCGAGAGGATTCAGTCTGCGAGGGACAGGAGGCTCAAGTCCG
TGGCGAAAGCCGTGCGCGCTGTACGGGTGTGTGTGTATGGCTCCATGGTG
GTGCTCATGTGGGGACGGCCGTTGATATCTTTCTCGCCGGATTACCTGTG
GCCTTCGTCGTTTTCACATGCCCTGTCGGGTGGCAGGGCGGCTGGCAGCG
TGGGGGCACTGTCCATTGTGGCGATGTTTTTGTTCGGGTTGGTACCACGG
TTGTCGCCATCGGCATGA
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protein sequence of Ec-28_000670.1

>Ec-28_000670.1 ID=Ec-28_000670.1|Name=Ec-28_000670.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=176bp
MAGMVGASPHLPSVMAVSVDTLFLVVMMCSLVEVVAGFVMWKTSRVTRTE
AALISQRQTLRTGVAKTNYTATFVENSKLKRLLLKAEKDLERIQSARDRR
LKSVAKAVRAVRVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRA
AGSVGALSIVAMFLFGLVPRLSPSA*
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mRNA from alignment at chr_28:632846..635478-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000670.1 ID=Ec-28_000670.1|Name=Ec-28_000670.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2633bp|location=Sequence derived from alignment at chr_28:632846..635478- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CTGTCGCTGGTCTCTGCTCTCTCTTGCGTGTTGCTGGGCTTCCCTCTTCC
TCAAAGGTATGGCCAACGAATGTGTTGCGATCTTGAGAACTGAGGTTGAC
AGGGATAAGGAGGATGGTTATGCACGTAGCGAAACGAGTCGCAGCTGAAC
TGCCACGTGTGTACCTGCTTGCTGTCACAGCGGTAGCGAGCGCAGGAGAC
ATTTTCCGAATTGAACGTTTGACCAAAAGTTGAAGTTTGGCAGCTGTGCG
GAAGCTACTGCTTGGTTAATCGGAAGAAAAGCTCTGATCCATGCGTGAGA
GAGCTTCGATGACCCCCCGGCTGTGTATCTATTCTGAAATCCAAACATTT
TGTAGCGGAGTCTTTTTCGATTGTACCGCAACCAGACCTCCTTTTCCGCC
CACAGCGCTACCCCGATGGCCCCTCGGAACATGACCCTCCCTACCGCTCG
TTTCATTCTGGTCTCGAAAACATGCCGTTGACAGCTACAAACGCGTGACT
TAGGCGCTGCAGGGGGAATTTGAACGACCGACTGAAAAGCGCGAAATAAC
CGAGAGAGCGTACACATAATGGCAGGCATGGTGGGCGCTTCGCCTCACTT
GCCATCGGTCATGGCTGTGAGCGTTGACACCCTCTTTCTGGTGGTGATGA
TGTGCTCTCTTGTGGAGGTAAGGCGTATTTTATCTCTAGGGAGAATATTC
TTGCTCGAAGTGTGTGTACAACGCCGTTACAGGCAGCAGGAGTGCTAGAC
TTGGATACGTGCAGCGCGACTAAACTGCTGTGGAGTCAATATACATAGCA
CCAAGGAATCAAACTCAAGTACAGCAGCAGTTGCTCCAAGGAATGAACTC
AATCACCAAGCTTGTGCCTCGGGTGTTGCAGAGGTAGTTTTGTAGTTGTT
CCAGGTACTGCTTGTGCAAGCGCTTGACGCGTCGCCGAGTCCAACACGCC
GGGGAGTGACATACCGATATACTCCTTTTTGATCCTGGTAAATGGTAACG
TGGAGGTGGCCATTCCGTTCCTCGACCGCCCGCAACGTTGCAAAGGCTGC
ATGAACCATGAGGATGTTTGTCTTGTGATTGCGTGCTTTTTGCAACCCTT
GATCTCAACAAGCCGTTTGAGGGTGCTCACTCGAGACATTCCCTCTTTTG
GTAACCATCTTGCGCTGAACACGCGTGCTTTGTGTTGGAACTCGGCGGAA
AACTCTTGACGATAAGAGGTGGACAGCAGTGCAAAGGCCACGAGCACGAA
GTCCCGAACCAGCCACACGCGAACCCGCTTGTCCCAGCACACGCGCTATT
CATTCATTGCGTGTTGGTGGACGGATTGTTTTCTTACCGACTGCCGGTTG
TCGCTTGCTCCAGGTGGTGGCTGGGTTCGTCATGTGGAAAACATCGAGGG
TGACACGAACAGAGGCGGCTTTGATATCGCAACGCCAAACCCTGAGGACA
GGAGTTGCCAAGGTGCGAGAACAAAATTTCTGCCGACCCTTGTTTTGGAT
CACGTTTGCCCTTGGCGTAGCCACTGGGACGCGGCGGGGCAGCGAGAGAA
CAGGACCGTCAATGAAGCACGGTGGTTTTTCCATATCACTTTGAGTGGTG
TAGTGTCTCGCTGGGCTTTCTTTCGGGATCCAGAGCGTTGCTTGACTGTC
CTCTCCTCTGACAGTTCTTTGATCAACCTTCCTCTCTCTTGTGTTTCTCG
CCTCTCTGTCTCGCAGACAAACTACACGGCGACCTTCGTCGAGAATTCCA
AGCTCAAACGCCTCTTGCTTAAGGCGGAGAAGGATCTCGAGAGGATTCAG
TCTGCGAGGGACAGGAGGCTCAAGTCCGTGGCGAAAGCCGTGCGCGCTGT
ACGGGTGAGGCATGGTGTAGGATTCACGAGCGGGATTTCAGACTGCCGTT
TTTCCTTTCCCGACACCATCCTTTCAAGCCTTCCAGGGCTGATTATACGC
GTTCTGCAAGAAGCTTCTTGTTTCTTCAACCCTCGCATCGCTTTCGATCT
CATAGATGGAACCGCTCGCTGCCCGTTCGTTGTTCACGTGCCTTCGCTAT
TGCGCCCCCCCCCCCCCCGGCCGGGGGGGGTGTATGGGTCCCTGGGGGGG
GCCCTGTGGGGAACGGCCTTTAAATCTTTTTCCCCCGAATACCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGGGG
GGGTTTTCAGCTGCCCTTTTTCCTTTTCCGGACCCCTTCTTTTAAACCTT
TCCAGGGTGGTTTTTCCGGTTTTCGCAAAAAGTTTTTTTTTTTTTCACCC
CTCGCTTCGTTTTTGTTTTAAAGAAGGAACCCCCCCCCTCCCCTTTGTTT
TTTCAGGGCCTTTGATATTGGGCCCCCCCCCCCCGCGGCAGGTGTGTGTG
TATGGCTCCATGGTGGTGCTCATGTGGGGACGGCCGTTGATATCTTTCTC
GCCGGATTACCTGTGGCCTTCGTCGTTTTCACATGCCCTGTCGGGTGGCA
GGGCGGCTGGCAGCGTGGGGGCACTGTCCATTGTGGCGATGTTTTTGTTC
GGGTTGGTACCACGGTTGTCGCCATCGGCATGA
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Coding sequence (CDS) from alignment at chr_28:632846..635478-

>Ec-28_000670.1 ID=Ec-28_000670.1|Name=Ec-28_000670.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=528bp|location=Sequence derived from alignment at chr_28:632846..635478- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCAGGCATGGTGGGCGCTTCGCCTCACTTGCCATCGGTCATGGCTGT
GAGCGTTGACACCCTCTTTCTGGTGGTGATGATGTGCTCTCTTGTGGAGG
TGGTGGCTGGGTTCGTCATGTGGAAAACATCGAGGGTGACACGAACAGAG
GCGGCTTTGATATCGCAACGCCAAACCCTGAGGACAGGAGTTGCCAAGAC
AAACTACACGGCGACCTTCGTCGAGAATTCCAAGCTCAAACGCCTCTTGC
TTAAGGCGGAGAAGGATCTCGAGAGGATTCAGTCTGCGAGGGACAGGAGG
CTCAAGTCCGTGGCGAAAGCCGTGCGCGCTGTACGGGTGTGTGTGTATGG
CTCCATGGTGGTGCTCATGTGGGGACGGCCGTTGATATCTTTCTCGCCGG
ATTACCTGTGGCCTTCGTCGTTTTCACATGCCCTGTCGGGTGGCAGGGCG
GCTGGCAGCGTGGGGGCACTGTCCATTGTGGCGATGTTTTTGTTCGGGTT
GGTACCACGGTTGTCGCCATCGGCATGA
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Synonyms
The feature 'Ec-28_000670.1' has the following synonyms
Synonym
Esi0098_0021
Esi_0098_0021