Ec-28_000550.3 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000550.3
Unique NameEc-28_000550.3
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length150
Homology
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BLAST of Ec-28_000550.3 vs. uniprot
Match: D7G9D9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9D9_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.140e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 3 
Query:  111 GWESFCAYAVTGAGKRRRAKTRRRKRAEGIQVERKERNMSESLDASLSGFVNVLGVLVFVSITVYHVVTANRKDIAS 341
            GWESFCAYAVTGAGKRRRAKTRRRKRAEGIQVERKERNMSESLDASLSGFVNVLGVLVFVSITVYHVVTANRKDIAS
Sbjct:    2 GWESFCAYAVTGAGKRRRAKTRRRKRAEGIQVERKERNMSESLDASLSGFVNVLGVLVFVSITVYHVVTANRKDIAS 78
The following BLAST results are available for this feature:
BLAST of Ec-28_000550.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9D9_ECTSI1.140e-39100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:560153..563586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1418
Hectar predicted targeting categoryother localisation
Gene idEc-28_000550.3
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000550Ec-28_000550Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 560087..563591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000550.3Ec-28_000550.3Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 563136..563585 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000550.3.1Ec-28_000550.3.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 560153..560241 +
Ec-28_000550.3.2Ec-28_000550.3.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 560831..560856 +
Ec-28_000550.3.3Ec-28_000550.3.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 562284..563586 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0005505UTR:Ec-28_000550.3Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 560153..560241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000550.3CDS:Ec-28_000550.3Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 563136..563585 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0005503UTR:Ec-28_000550.3Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 563586..563586 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000550.3 ID=Ec-28_000550.3|Name=Ec-28_000550.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=150bp
MLTFPRSASPGMSSPLSSENISYCSGIHRPHRLKHGVTSTSDTCTLAASH
CRPFLDRVLWISAESVDQQRPSRLGGFRGVVSVRDFRKAIHVCRSVASTE
VLLIRSGLEHFDGPLKPLAQPFLHGRGHKRRFETVLCETINIRWKSKHTT
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spliced messenger RNA

>Ec-28_000550.3 ID=Ec-28_000550.3|Name=Ec-28_000550.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1418bp|location=Sequence derived from alignment at chr_28:560153..563586+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CTCCCTCGGTCTTCGCGTGGCCATCCACCCAAAGGTAGTTGCCATCCGCT
AGGCAAACCTGCGGTAGTTGCGAGGAGAAATAATCAAAGCCGTACGTGAT
GGTCGGCCATATGGGGTGGGAAAGCTTTTGCGCATACGCGGTGACAGGTG
CTGGCAAGAGGAGAAGGGCGAAGACGCGAAGGCGGAAAAGAGCAGAGGGA
ATCCAGGTCGAAAGGAAGGAGCGCAACATGAGCGAGAGCCTGGACGCATC
GCTGTCGGGGTTCGTCAACGTGCTCGGAGTCTTGGTGTTTGTGTCCATCA
CCGTGTACCACGTAGTCACGGCCAACCGAAAAGACATTGCATCATGACGA
ACCGATGGGGAGATATTTATCGGGCAGGTTCGCATGGTAGTTAAATTATC
GATGGCGTCACACCGCTGATTCTCGCTATAAATGCGCACTTTCGTAGCAC
TTCCGGCGTTTGGACCCTGCTACTCGATCGCGTTTCTCAGCCGGAACACA
AAACGCTTGGGCGTATTTCGCGTGTTTTGTGTGTGTGTCCCTCTTCATTC
GGCGTACCAACGATGGGGCTATCTTCTAGGGGCGGGGCGGTTGGTCGGTT
TCCATGCGCCGTCGGCGTGAAGGAGCAAGGTCATGGCGCTCGTTAGCGCA
CGCTTGTATCGCTGCGCCTGTTCTTGATGTGCTTGCGATTGCGGCAGATG
CGTTGGTTGGATTTGGCTTCAAAATGTGTGGGAATCTTGGAGAGCGTGTT
TTTGTGGAACTTGAAATCCTTGGCTTGAAATTGATTTTGGCCGCAAGTCC
AATTTTGTAATTTCGGCGGTTTCGTTTCTGTCGCGATGCAAGGCGTCGAT
AGTATCACGGCTGCAAAGTGGAGGCCCGCCCTTTGCGCTATGAGCCGGCC
TTGGTTGAATCTTTAAGATCTTCTACCAAGGTACACCCTGAGATGGGTTC
CTGCCGCGCTTGGAAACATGCTTACGTTTCCCCGGAGTGCATCACCGGGG
ATGTCTTCTCCCCTATCCTCTGAAAACATCAGCTACTGTAGTGGAATACA
CCGGCCTCATCGTCTGAAGCATGGAGTGACCAGCACGTCTGATACATGTA
CCCTGGCAGCCAGCCATTGTCGTCCCTTCCTGGATAGGGTTCTGTGGATA
AGCGCTGAATCTGTTGATCAACAACGACCATCTCGACTAGGGGGTTTTCG
TGGTGTAGTATCTGTCCGTGACTTTCGAAAGGCCATCCATGTCTGTCGGT
CTGTTGCATCGACAGAGGTGTTGTTGATACGTTCTGGACTGGAGCATTTT
GACGGCCCCCTCAAACCGCTTGCACAGCCGTTCCTACATGGGAGGGGTCA
CAAGCGACGATTTGAAACGGTTCTCTGCGAAACAATCAACATCAGGTGGA
AGTCGAAACACACAACCA
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protein sequence of Ec-28_000550.3

>Ec-28_000550.3 ID=Ec-28_000550.3|Name=Ec-28_000550.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=150bp
MLTFPRSASPGMSSPLSSENISYCSGIHRPHRLKHGVTSTSDTCTLAASH
CRPFLDRVLWISAESVDQQRPSRLGGFRGVVSVRDFRKAIHVCRSVASTE
VLLIRSGLEHFDGPLKPLAQPFLHGRGHKRRFETVLCETINIRWKSKHTT
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mRNA from alignment at chr_28:560153..563586+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000550.3 ID=Ec-28_000550.3|Name=Ec-28_000550.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3434bp|location=Sequence derived from alignment at chr_28:560153..563586+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CTCCCTCGGTCTTCGCGTGGCCATCCACCCAAAGGTAGTTGCCATCCGCT
AGGCAAACCTGCGGTAGTTGCGAGGAGAAATAATCAAAGGTGAGGTCCTT
GTTTCAGTATCCGATTCGCTTGTGTCCAATGTCCAACCTCGTGAGGTACG
TACCGCGAATCCCCCGTCCCCCTCTCAATCTCTCAGCATCTCCGCCAAGG
CAACGGAACTTTCGGTTGTGGCGAATCGGCAGATGCCGGGGATAGCCGGG
AATGCTGCACACGAACTATGCCCTCCCTCTCATCAGACTTATGCTAAGGG
TACGATTGCTGCTGTAAGCGTTCGCGATGCTGTGTCGCTTTTACCCGCCT
GTGGGTGCGGCGTGATTGTCACCCAACGATACCTCTCGGTAGGGCAGATC
GAGCACACTAGTTGAGACTTTGCCAACCAACCATGCACTTGTAGGACAGG
AGGACGCCTGGTGTGCGGCTGGGGTGGAGCCGCATATGATGTCCCGATTT
ACAACAGCAGTGACAACAGCACAGCTCACGCAGAGTTAGTTAACGATGGG
TTACCGAGAGGATAACTTGTAGCTGTCGCTGTTTGGTACTGCGTACCGCT
GACCATCACCGTTTGGTCACGGAAGGCGAGGAAAAACTCTATCGTTGCGT
GTTGCAACATAGCTGAATCACCATACAGCCGTACGTGATGGTCGGCCATA
TGGGGCGTTACTCTCCCTTGATGAACCACATTGCGGAAATCGGCGGGTTA
TCTGATACCTTGAGGTCGCCGTACAGTAGTAGTAGATGACCACCACCCTT
CAATCCTTGCTTCCTCGCCCACGGGATAGATCATGAGCTAATAGCTCACC
TACTGCTGTATGTCTCACAGATCAGCATGGAGCCTACTCAGCTCACCTAT
ATGTAGCAGGTTAGCATGGAGCAAACATACTCAGCTCACCTACCGTATAT
GACACAAGATAACACACCCCCTTGGCCGATTTTCAAAGCTCAATTTCTCA
ACAGCAGGAAGAGTCACAGCGCCGAAAACGGCGGCGTTGGAACCGTCTCG
TCGAGAGCTGTTCGAAAACGTATTGTTTCGTTTATGCATCCTCTTCGTCG
TGGAGTAATCGAGCTTTGAAAATCGGTCCAGGGGGTGTGTTATCTTGTGT
CATATACGGTATGTCCTTCGGATACTACCATGGAACAAACATACTCAGAT
CACCTCCGTCTGAACCCTTCGCTATTAGCAGCCGTAGCGTCACCGCACCA
ATCGACTGAGAGATGGTTGTGATGTCTGAGGGAGAGATACATCACTGTTG
TAGTAGAGCTTGGGGCTACCTAGACGTCGGCTCAGCCGTACCGTTACCGG
GCCAACCGATAAGGAGATGATCGTGATTTGTGATGGAGATATATGCGTAC
GTCGCTGTTATTGTTGAGAAATGTCCTGTCTAGGCACCGGCCTTACATGC
CTCAAACGCAACGCGTTCTTCCGTCTACGTCCCAGCCTTTGAAAACTTGA
AGATGGTCTGCGTATTGATGTCATCGGAACAACAAGTAACACTGGATCTG
TCACTTCAAGTCTGTACTTTCGCTCTATCGATGAGTCAGACGTCCGGTGA
ACCCGTACGGCTGCATCATTCGACCTCGGTATTTTTGCCCTTTACGACAG
TAAGCTTAGATAGAGGGTGCACAGCAGTCATTCGCCTTGTGGAGCTCAGT
GCCAACACATCCTTAACGCCTCACGGCGAATTAGTCGCCCTCGCCGGGCT
TTTCCTTGCTTGGCAAACAATGTTATCGTCGCAATGAAGCTACCCTTGCA
CCCTGTGCTGATCAGCGCCGCAGCAGAACTTTCAGGAGCTATGCATATCT
ACGGGACTGCTGCAATCACGTGTTTCCTCGCACTCTTCAAATCGTGCGCA
TCGATCAATCTGCGGGCGTTGTTTCTTTTCGTCGCTTCTCAAGTGGGCAC
TGCCATGGCCCCCCCCCCCCCCCCCCAATGGTCAAACGATTACGGCATGC
ACGACTATGAGTACACCCCCCCCCCCGCCCGTTCGATTTTTAGGTGGGGG
TAATACCAAGCCCTTCTCTTACCGCCCAGTTTCCTTCCCTTCCCCACCCT
GTGCCTACATGCGCCGGTATCGTGCCGACAGGTGGGAAAGCTTTTGCGCA
TACGCGGTGACAGGTGCTGGCAAGAGGAGAAGGGCGAAGACGCGAAGGCG
GAAAAGAGCAGAGGGAATCCAGGTCGAAAGGAAGGAGCGCAACATGAGCG
AGAGCCTGGACGCATCGCTGTCGGGGTTCGTCAACGTGCTCGGAGTCTTG
GTGTTTGTGTCCATCACCGTGTACCACGTAGTCACGGCCAACCGAAAAGA
CATTGCATCATGACGAACCGATGGGGAGATATTTATCGGGCAGGTTCGCA
TGGTAGTTAAATTATCGATGGCGTCACACCGCTGATTCTCGCTATAAATG
CGCACTTTCGTAGCACTTCCGGCGTTTGGACCCTGCTACTCGATCGCGTT
TCTCAGCCGGAACACAAAACGCTTGGGCGTATTTCGCGTGTTTTGTGTGT
GTGTCCCTCTTCATTCGGCGTACCAACGATGGGGCTATCTTCTAGGGGCG
GGGCGGTTGGTCGGTTTCCATGCGCCGTCGGCGTGAAGGAGCAAGGTCAT
GGCGCTCGTTAGCGCACGCTTGTATCGCTGCGCCTGTTCTTGATGTGCTT
GCGATTGCGGCAGATGCGTTGGTTGGATTTGGCTTCAAAATGTGTGGGAA
TCTTGGAGAGCGTGTTTTTGTGGAACTTGAAATCCTTGGCTTGAAATTGA
TTTTGGCCGCAAGTCCAATTTTGTAATTTCGGCGGTTTCGTTTCTGTCGC
GATGCAAGGCGTCGATAGTATCACGGCTGCAAAGTGGAGGCCCGCCCTTT
GCGCTATGAGCCGGCCTTGGTTGAATCTTTAAGATCTTCTACCAAGGTAC
ACCCTGAGATGGGTTCCTGCCGCGCTTGGAAACATGCTTACGTTTCCCCG
GAGTGCATCACCGGGGATGTCTTCTCCCCTATCCTCTGAAAACATCAGCT
ACTGTAGTGGAATACACCGGCCTCATCGTCTGAAGCATGGAGTGACCAGC
ACGTCTGATACATGTACCCTGGCAGCCAGCCATTGTCGTCCCTTCCTGGA
TAGGGTTCTGTGGATAAGCGCTGAATCTGTTGATCAACAACGACCATCTC
GACTAGGGGGTTTTCGTGGTGTAGTATCTGTCCGTGACTTTCGAAAGGCC
ATCCATGTCTGTCGGTCTGTTGCATCGACAGAGGTGTTGTTGATACGTTC
TGGACTGGAGCATTTTGACGGCCCCCTCAAACCGCTTGCACAGCCGTTCC
TACATGGGAGGGGTCACAAGCGACGATTTGAAACGGTTCTCTGCGAAACA
ATCAACATCAGGTGGAAGTCGAAACACACAACCA
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Coding sequence (CDS) from alignment at chr_28:560153..563586+

>Ec-28_000550.3 ID=Ec-28_000550.3|Name=Ec-28_000550.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=450bp|location=Sequence derived from alignment at chr_28:560153..563586+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTTACGTTTCCCCGGAGTGCATCACCGGGGATGTCTTCTCCCCTATC
CTCTGAAAACATCAGCTACTGTAGTGGAATACACCGGCCTCATCGTCTGA
AGCATGGAGTGACCAGCACGTCTGATACATGTACCCTGGCAGCCAGCCAT
TGTCGTCCCTTCCTGGATAGGGTTCTGTGGATAAGCGCTGAATCTGTTGA
TCAACAACGACCATCTCGACTAGGGGGTTTTCGTGGTGTAGTATCTGTCC
GTGACTTTCGAAAGGCCATCCATGTCTGTCGGTCTGTTGCATCGACAGAG
GTGTTGTTGATACGTTCTGGACTGGAGCATTTTGACGGCCCCCTCAAACC
GCTTGCACAGCCGTTCCTACATGGGAGGGGTCACAAGCGACGATTTGAAA
CGGTTCTCTGCGAAACAATCAACATCAGGTGGAAGTCGAAACACACAACC
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Synonyms
The feature 'Ec-28_000550.3' has the following synonyms
Synonym
Esi0098_0011
Esi_0098_0011