Ec-28_000550.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000550.1
Unique NameEc-28_000550.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length79
Homology
[Close]
BLAST of Ec-28_000550.1 vs. uniprot
Match: D7G9D9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9D9_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 2.840e-45
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:    1 MGWESFCAYAVTGAGKRRRAKTRRRKRAEGIQVERKERNMSESLDASLSGFVNVLGVLVFVSITVYHVVTANRKDIAS 234
            MGWESFCAYAVTGAGKRRRAKTRRRKRAEGIQVERKERNMSESLDASLSGFVNVLGVLVFVSITVYHVVTANRKDIAS
Sbjct:    1 MGWESFCAYAVTGAGKRRRAKTRRRKRAEGIQVERKERNMSESLDASLSGFVNVLGVLVFVSITVYHVVTANRKDIAS 78
The following BLAST results are available for this feature:
BLAST of Ec-28_000550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9D9_ECTSI2.840e-45100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:560852..562515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length237
Hectar predicted targeting categorysignal anchor
Gene idEc-28_000550.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000550Ec-28_000550Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 560087..563591 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000550.1.1Ec-28_000550.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 560852..560856 +
Ec-28_000550.1.2Ec-28_000550.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 562284..562515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000550.1CDS:Ec-28_000550.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 560852..560856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000550.1Ec-28_000550.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 560852..562515 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000550.1 ID=Ec-28_000550.1|Name=Ec-28_000550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=79bp
MGWESFCAYAVTGAGKRRRAKTRRRKRAEGIQVERKERNMSESLDASLSG
FVNVLGVLVFVSITVYHVVTANRKDIAS*
back to top

spliced messenger RNA

>Ec-28_000550.1 ID=Ec-28_000550.1|Name=Ec-28_000550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=237bp|location=Sequence derived from alignment at chr_28:560852..562515+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTGGGAAAGCTTTTGCGCATACGCGGTGACAGGTGCTGGCAAGAG
GAGAAGGGCGAAGACGCGAAGGCGGAAAAGAGCAGAGGGAATCCAGGTCG
AAAGGAAGGAGCGCAACATGAGCGAGAGCCTGGACGCATCGCTGTCGGGG
TTCGTCAACGTGCTCGGAGTCTTGGTGTTTGTGTCCATCACCGTGTACCA
CGTAGTCACGGCCAACCGAAAAGACATTGCATCATGA
back to top

protein sequence of Ec-28_000550.1

>Ec-28_000550.1 ID=Ec-28_000550.1|Name=Ec-28_000550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=79bp
MGWESFCAYAVTGAGKRRRAKTRRRKRAEGIQVERKERNMSESLDASLSG
FVNVLGVLVFVSITVYHVVTANRKDIAS*
back to top

mRNA from alignment at chr_28:560852..562515+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000550.1 ID=Ec-28_000550.1|Name=Ec-28_000550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1664bp|location=Sequence derived from alignment at chr_28:560852..562515+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGCGTTACTCTCCCTTGATGAACCACATTGCGGAAATCGGCGGGTT
ATCTGATACCTTGAGGTCGCCGTACAGTAGTAGTAGATGACCACCACCCT
TCAATCCTTGCTTCCTCGCCCACGGGATAGATCATGAGCTAATAGCTCAC
CTACTGCTGTATGTCTCACAGATCAGCATGGAGCCTACTCAGCTCACCTA
TATGTAGCAGGTTAGCATGGAGCAAACATACTCAGCTCACCTACCGTATA
TGACACAAGATAACACACCCCCTTGGCCGATTTTCAAAGCTCAATTTCTC
AACAGCAGGAAGAGTCACAGCGCCGAAAACGGCGGCGTTGGAACCGTCTC
GTCGAGAGCTGTTCGAAAACGTATTGTTTCGTTTATGCATCCTCTTCGTC
GTGGAGTAATCGAGCTTTGAAAATCGGTCCAGGGGGTGTGTTATCTTGTG
TCATATACGGTATGTCCTTCGGATACTACCATGGAACAAACATACTCAGA
TCACCTCCGTCTGAACCCTTCGCTATTAGCAGCCGTAGCGTCACCGCACC
AATCGACTGAGAGATGGTTGTGATGTCTGAGGGAGAGATACATCACTGTT
GTAGTAGAGCTTGGGGCTACCTAGACGTCGGCTCAGCCGTACCGTTACCG
GGCCAACCGATAAGGAGATGATCGTGATTTGTGATGGAGATATATGCGTA
CGTCGCTGTTATTGTTGAGAAATGTCCTGTCTAGGCACCGGCCTTACATG
CCTCAAACGCAACGCGTTCTTCCGTCTACGTCCCAGCCTTTGAAAACTTG
AAGATGGTCTGCGTATTGATGTCATCGGAACAACAAGTAACACTGGATCT
GTCACTTCAAGTCTGTACTTTCGCTCTATCGATGAGTCAGACGTCCGGTG
AACCCGTACGGCTGCATCATTCGACCTCGGTATTTTTGCCCTTTACGACA
GTAAGCTTAGATAGAGGGTGCACAGCAGTCATTCGCCTTGTGGAGCTCAG
TGCCAACACATCCTTAACGCCTCACGGCGAATTAGTCGCCCTCGCCGGGC
TTTTCCTTGCTTGGCAAACAATGTTATCGTCGCAATGAAGCTACCCTTGC
ACCCTGTGCTGATCAGCGCCGCAGCAGAACTTTCAGGAGCTATGCATATC
TACGGGACTGCTGCAATCACGTGTTTCCTCGCACTCTTCAAATCGTGCGC
ATCGATCAATCTGCGGGCGTTGTTTCTTTTCGTCGCTTCTCAAGTGGGCA
CTGCCATGGCCCCCCCCCCCCCCCCCCAATGGTCAAACGATTACGGCATG
CACGACTATGAGTACACCCCCCCCCCCGCCCGTTCGATTTTTAGGTGGGG
GTAATACCAAGCCCTTCTCTTACCGCCCAGTTTCCTTCCCTTCCCCACCC
TGTGCCTACATGCGCCGGTATCGTGCCGACAGGTGGGAAAGCTTTTGCGC
ATACGCGGTGACAGGTGCTGGCAAGAGGAGAAGGGCGAAGACGCGAAGGC
GGAAAAGAGCAGAGGGAATCCAGGTCGAAAGGAAGGAGCGCAACATGAGC
GAGAGCCTGGACGCATCGCTGTCGGGGTTCGTCAACGTGCTCGGAGTCTT
GGTGTTTGTGTCCATCACCGTGTACCACGTAGTCACGGCCAACCGAAAAG
ACATTGCATCATGA
back to top

Coding sequence (CDS) from alignment at chr_28:560852..562515+

>Ec-28_000550.1 ID=Ec-28_000550.1|Name=Ec-28_000550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=237bp|location=Sequence derived from alignment at chr_28:560852..562515+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGTGGGAAAGCTTTTGCGCATACGCGGTGACAGGTGCTGGCAAGAG
GAGAAGGGCGAAGACGCGAAGGCGGAAAAGAGCAGAGGGAATCCAGGTCG
AAAGGAAGGAGCGCAACATGAGCGAGAGCCTGGACGCATCGCTGTCGGGG
TTCGTCAACGTGCTCGGAGTCTTGGTGTTTGTGTCCATCACCGTGTACCA
CGTAGTCACGGCCAACCGAAAAGACATTGCATCATGA
back to top
Synonyms
The feature 'Ec-28_000550.1' has the following synonyms
Synonym
Esi0098_0011
Esi_0098_0011