Ec-28_000510.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000510.1
Unique NameEc-28_000510.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length257
Homology
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BLAST of Ec-28_000510.1 vs. uniprot
Match: D7G9D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9D5_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 4.180e-27
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 2 
Query:  620 MPWLAVPYGETAATARLAGACKVRGTPSLAVFDGATGELLTALGAADVSDPGALADPLAV 799
            MPWLAVPYGETAATARLAGACKVRGTPSLAVFDGATGELLTALGAADVSDPGALADPLA 
Sbjct:    1 MPWLAVPYGETAATARLAGACKVRGTPSLAVFDGATGELLTALGAADVSDPGALADPLAA 60
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BLAST of Ec-28_000510.1 vs. uniprot
Match: A0A1D1YBZ2_9ARAE (Putative nucleoredoxin 1 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YBZ2_9ARAE)

HSP 1 Score: 84.3 bits (207), Expect = 6.750e-13
Identity = 55/124 (44.35%), Postives = 67/124 (54.03%), Query Frame = 2 
Query:  428 QATSASLHGKRAVGVLFSARWC---RGLGSKLALFYHACLQRDQDAFEVVFVSNDRDARAFRAYREGMPWLAVPYGETAATARLAGACKVRGTPSLAVFDGATGELLTALGAADVSDPGALADP 790
            Q     L GK  VG+ FSA WC   RG   KLA  Y          FEVVFVS+DRD  +F+ Y   MPWLAVP+ ++A   R     KVRG P L V DG+TG++LT    A + + G  A P
Sbjct:   40 QVKVGDLDGK-IVGIYFSAHWCPPCRGFTPKLAEAY---ADLSPKGFEVVFVSSDRDEGSFQGYLSEMPWLAVPFSDSATRQRAKDLFKVRGIPHLVVLDGSTGKVLTTEAVAVLREYGTDAYP 159
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BLAST of Ec-28_000510.1 vs. uniprot
Match: A0A8J5XBT9_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XBT9_DIALT)

HSP 1 Score: 82.8 bits (203), Expect = 1.050e-12
Identity = 46/112 (41.07%), Postives = 67/112 (59.82%), Query Frame = 2 
Query:  416 TGTLQATSASLHGKRAVGVLFSARWC---RGLGSKLALFYHACLQRDQDAFEVVFVSNDRDARAFRAYREGMPWLAVPYGETAATARLAGACKVRGTPSLAVFDGATGELLT 742
            +G ++ T+ +L GK  VG+ FSA WC   R    +LA  Y A +   + AFE+VF+S+DRD  +F +Y    PW A+PY      A L+   KV+G P+L + DG TG++LT
Sbjct:   16 SGLMKPTAEALEGKEVVGLYFSAHWCGPCRAFTPQLASTYTAIMGAGK-AFEIVFISSDRDEGSFDSYWSEQPWPALPYAARGEKAALSRKYKVQGIPTLVLLDGKTGKVLT 126
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BLAST of Ec-28_000510.1 vs. uniprot
Match: B4ZFY3_AMPCA (Nucleoredoxin (Fragment) n=1 Tax=Amphidinium carterae TaxID=2961 RepID=B4ZFY3_AMPCA)

HSP 1 Score: 79.0 bits (193), Expect = 2.470e-12
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 2 
Query:  404 LLDTTGTLQATSASLHGKRAVGVLFSARWC---RGLGSKLALFYHACLQRDQDAFEVVFVSNDRDARAFRAYREGMPWLAVPYGETAATARLAGACKVRGTPSLAVFD 718
            LL  + +  +T+ +L GK AV + FSA WC   RG   +LA +Y   L+      EVVFVS+D++ +AF  Y   MPWLA+PY E    A L+   KV+G PSL + D
Sbjct:    5 LLAASASKVSTATALAGKSAVALYFSAHWCPPCRGFTPQLAEWYKNSLKAK--GLEVVFVSSDKEEKAFNEYHAEMPWLALPYTERELKATLSKKFKVQGIPSLVILD 110
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BLAST of Ec-28_000510.1 vs. uniprot
Match: A0A6H5K4H0_9PHAE (Adenine phosphoribosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4H0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.110e-12
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:    4 LPMEETYMPDGPEAQRIARTIPFYPFKGIDRFYDI 108
            +PMEETYMPDGPEAQRIARTIPFYPFKGIDRFYDI
Sbjct:    1 MPMEETYMPDGPEAQRIARTIPFYPFKGIDRFYDI 35
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BLAST of Ec-28_000510.1 vs. uniprot
Match: A0A3B4WWI3_SERLL (Thioredoxin domain-containing protein n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=A0A3B4WWI3_SERLL)

HSP 1 Score: 75.1 bits (183), Expect = 5.360e-12
Identity = 46/99 (46.46%), Postives = 56/99 (56.57%), Query Frame = 2 
Query:  434 TSASLHGKRAVGVLFSARWC---RGLGSKLALFYHACLQRDQDAFEVVFVSNDRDARAFRAYREGMPWLAVPYGETAATARLAGACKVRGTPSLAVFDG 721
            T+ +L GK  V + FSA WC   RG    LA  Y A L  D  AFEVVFVS+D+D  +F  Y    PWLA+P+G     A L+   KV G PSL + DG
Sbjct:   20 TATALKGKAVVALYFSAHWCPPCRGFTPVLADKYKA-LVGDGKAFEVVFVSSDKDEASFDEYYAEQPWLALPFGSRDVKAALSKKYKVSGIPSLVLLDG 117
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BLAST of Ec-28_000510.1 vs. uniprot
Match: A0A813KHU8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KHU8_POLGL)

HSP 1 Score: 79.0 bits (193), Expect = 8.590e-12
Identity = 54/125 (43.20%), Postives = 66/125 (52.80%), Query Frame = 2 
Query:  419 GTLQATSASLHGKRAVGVLFSARWC---RGLGSKLALFYHACLQRDQDAFEVVFVSNDRDARAFRAYREGMPWLAVPYGETAATARLAGACKVRGTPSLAVFDGATGELLTALGAADVSDPGALA 784
            G  +  S+SL     V V FSA WC   +    +L   Y     + + AFEVVFVS+DRD  +F+ Y   MPW AVPY + A    L  A +VRG PSL + DGATG LL A     V  P  LA
Sbjct:   12 GNAEVPSSSLQAG-VVAVYFSAHWCGPCQAYTPQLKKVYERARAKGK-AFEVVFVSSDRDDASFKEYFGSMPWHAVPYADRARQQVLNTAFQVRGIPSLVLLDGATGSLLDANARGKVMQPDFLA 134
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BLAST of Ec-28_000510.1 vs. uniprot
Match: A0A7S0QS45_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QS45_9CRYP)

HSP 1 Score: 78.2 bits (191), Expect = 2.270e-11
Identity = 47/120 (39.17%), Postives = 66/120 (55.00%), Query Frame = 2 
Query:  425 LQATSASLHGKRAVGVLFSARWC---RGLGSKLALFYHACLQRDQDAFEVVFVSNDRDARAFRAYREGMPWLAVPYGETAATARLAGACKVRGTPSLAVFDGATGELLTALGAADVS-DP 772
            ++    SL     VG+ FSA WC   RG   KLA  Y    +    AFE+VF+S+D+D   F +Y   MPWLA+P+ +    A+L+   KV G PSL + D  TG +++  G A +S DP
Sbjct:   33 VELLKGSLPSAGVVGLYFSAHWCPPCRGFTPKLAETYTKIKEAGDKAFEIVFISSDKDQEQFDSYFAEMPWLALPFEQRDLKAKLSKKFKVNGIPSLVLLDAKTGAVISTDGRAALSKDP 152
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BLAST of Ec-28_000510.1 vs. uniprot
Match: A0A843U7U9_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843U7U9_COLES)

HSP 1 Score: 79.0 bits (193), Expect = 3.430e-11
Identity = 49/103 (47.57%), Postives = 59/103 (57.28%), Query Frame = 2 
Query:  443 SLHGKRAVGVLFSARWC---RGLGSKLALFYHACLQRDQDAFEVVFVSNDRDARAFRAYREGMPWLAVPYGETAATARLAGACKVRGTPSLAVFDGATGELLT 742
            +L GK  V + FSA WC   R     LA  Y     +    FEVVFVS+DR+  +F  Y   MPWLAVP+ +T A ARL    KVRG P L V DG+TG +LT
Sbjct:   73 NLEGK-TVAIYFSAHWCGPCRRFTPNLAEAYSELAPK---GFEVVFVSSDREEDSFGGYFSEMPWLAVPFSDTDARARLKSLFKVRGIPHLVVLDGSTGRVLT 171
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BLAST of Ec-28_000510.1 vs. uniprot
Match: UPI00065C13ED (nucleoredoxin n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00065C13ED)

HSP 1 Score: 72.4 bits (176), Expect = 4.110e-11
Identity = 43/121 (35.54%), Postives = 68/121 (56.20%), Query Frame = 2 
Query:  389 IYPRALLDTTGTLQATSASLHGKRAVGVLFSARWC---RGLGSKLALFYHACLQRDQDAFEVVFVSNDRDARAFRAYREGMPWLAVPYGETAATARLAGACKVRGTPSLAVFDGATGELLT 742
            ++   ++  +G +Q  ++SL  K  VG+ FSA WC   R     LA  Y +  ++ + AFE+VFVS+DR+    ++Y + MPWL +P+GE      L+    V G P+L + D  TGE +T
Sbjct:    6 LFGNEVVGKSGNVQ--TSSLESKDVVGIYFSAHWCPPCRNFTPVLAANYTSLTEQGK-AFEIVFVSSDREEGEAQSYYDSMPWLMLPFGERDRKNDLSKKYSVSGIPTLVLVDAKTGETIT 123
The following BLAST results are available for this feature:
BLAST of Ec-28_000510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9D5_ECTSI4.180e-2798.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1D1YBZ2_9ARAE6.750e-1344.35Putative nucleoredoxin 1 (Fragment) n=1 Tax=Anthur... [more]
A0A8J5XBT9_DIALT1.050e-1241.07Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
B4ZFY3_AMPCA2.470e-1242.59Nucleoredoxin (Fragment) n=1 Tax=Amphidinium carte... [more]
A0A6H5K4H0_9PHAE3.110e-1297.14Adenine phosphoribosyltransferase n=2 Tax=Ectocarp... [more]
A0A3B4WWI3_SERLL5.360e-1246.46Thioredoxin domain-containing protein n=1 Tax=Seri... [more]
A0A813KHU8_POLGL8.590e-1243.20Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S0QS45_9CRYP2.270e-1139.17Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A843U7U9_COLES3.430e-1147.57Uncharacterized protein n=1 Tax=Colocasia esculent... [more]
UPI00065C13ED4.110e-1135.54nucleoredoxin n=1 Tax=Aplysia californica TaxID=65... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:514464..520560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score85.9
Seed ortholog evalue3e-14
Seed eggNOG ortholog3067.XP_002958706.1
Length3621
KEGG koko:K17609
Hectar predicted targeting categoryother localisation
Gene idEc-28_000510.1
GOsGO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0042221,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748
EggNOG free text desc.Thioredoxin-like
EggNOG OGs34J9X@3041,37JND@33090,KOG2501@1,KOG2501@2759
EC1.8.1.8
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000510Ec-28_000510Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 514464..521302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000510.1Ec-28_000510.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 517003..520249 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000510.1.6Ec-28_000510.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 514464..517273 -
Ec-28_000510.1.5Ec-28_000510.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 517752..517876 -
Ec-28_000510.1.4Ec-28_000510.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 518409..518466 -
Ec-28_000510.1.3Ec-28_000510.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 518613..518677 -
Ec-28_000510.1.2Ec-28_000510.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 519306..519437 -
Ec-28_000510.1.1Ec-28_000510.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 520130..520560 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0005103UTR:Ec-28_000510.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 514464..517002 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000510.1CDS:Ec-28_000510.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 517003..517273 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0005105UTR:Ec-28_000510.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 520250..520560 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000510.1 ID=Ec-28_000510.1|Name=Ec-28_000510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=257bp
MGVVSPHEVQLLKFGTTMRRKHWTHGIYPRALLDTTGTLQATSASLHGKR
AVGVLFSARWCRGLGSKLALFYHACLQRDQDAFEVVFVSNDRDARAFRAY
REGMPWLAVPYGETAATARLAGACKVRGTPSLAVFDGATGELLTALGAAD
VSDPGALADPLAVIGRWLREDERDDSRSPSAQGEGREGARPRSRSSSSEV
LLSSRVPAAWVLATVFIAAAAAACGIAMAVALYKPPPARTMELRRIPPSR
PTCIKR*
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spliced messenger RNA

>Ec-28_000510.1 ID=Ec-28_000510.1|Name=Ec-28_000510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3621bp|location=Sequence derived from alignment at chr_28:514464..520560- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TCCGATATCGTAGAATCGATCAATTCCTTTGAACGGGTAGAACGGGATTG
TCCTCGCTATACGCTGAGCCTCTGGCCCATCTGGCATGTACGTTTCCTCC
ATAGGCAAAGGGTGCGTCGGTGCTTGTGCGTGATGCCCGGCTTGAACAGC
AGTGACGACACAGCGCGCACGTTGGGGGGGGGGGGGGCAAAAGGACGTAT
CCCCGCATCTCCGAGCTGAGAGAACCAAGTAAAAACGGAGATCCTTCGCG
ACTTGCAGAGATTTGCGCCGGAGCGAGAGCCAGCGACAAACAAAACCCCT
TACCGGGAGAGATGGGGGTCGTGTCGCCACACGAAGTGCAGCTGCTCAAA
TTCGGAACCACCATGAGACGAAAACATTGGACCCATGGTATCTATCCGAG
AGCGTTGCTGGACACAACTGGAACTCTCCAGGCCACTTCTGCGTCCCTCC
ACGGGAAGAGGGCCGTCGGAGTTCTGTTCTCGGCCAGGTGGTGCAGGGGC
TTGGGCTCGAAGCTGGCTCTGTTCTACCACGCCTGTCTCCAGCGCGACCA
AGACGCTTTCGAGGTTGTGTTCGTGAGCAACGACCGAGACGCAAGGGCGT
TCCGAGCCTATCGTGAGGGCATGCCATGGCTTGCCGTGCCTTACGGAGAG
ACTGCGGCCACGGCTAGACTTGCCGGAGCTTGTAAGGTGCGAGGAACTCC
ATCGCTGGCGGTCTTCGACGGGGCCACGGGAGAGCTCCTGACGGCCTTAG
GCGCCGCCGATGTGTCTGACCCAGGCGCCCTGGCCGATCCTCTCGCGGTG
ATTGGAAGATGGCTGCGTGAGGACGAGAGGGACGACTCTCGATCGCCGTC
CGCGCAGGGAGAAGGCCGGGAAGGGGCGCGACCACGATCGCGCTCGTCGT
CCTCGGAGGTGCTGCTGTCGTCGCGAGTACCAGCAGCATGGGTCCTGGCC
ACAGTCTTCATCGCCGCCGCCGCCGCCGCATGCGGTATTGCCATGGCGGT
GGCCTTGTACAAGCCTCCCCCGGCCAGGACGATGGAGCTCCGGAGAATCC
CGCCGAGCAGGCCCACTTGTATCAAAAGGTAGATGGGCGATAGATGTACC
ACGGCAGCAGAGATTGAGGAAGGTTGGGTGTCTATAGCCGAGGGATTTCC
TAGGGGACGGAAGTCCGGCCCCGCCGTCTTTGTCAACCCACGCCACGATG
GTGGTGGTGCCGTAGAAGAAGCGGAGAGTGCGAAGAAGGCCGCTTGGCCC
AGCTATGAAGAAGAAAGAACTTTACCCAGGCGCCGGCAGCTATGCATTTA
GCTGCAGCTAGCTCGTGTGTACGGACGTCCGTGAAGCGGGGGTACGTCCG
GAAGAGAGAGAGAGGCGTTCTCGCTACAAGCATTCGTATTATTATAACAG
GAAAGGAAGAGTGAGAAGGGGTCACACAACAAGACACCCCAGCGGGCTAA
ATTGGGGCTGTCTGTGCACAGTGGACACTTTATATCATCACATCGATCGA
TACCTTGATGCACGAAGCCGACGAAACGCGTCCCGCTGTCAAATCCATCC
ATTTACGCCACGAAACTTGCGTGGCAGGTGATGAGCGCTCCCACGCGGGC
GGTGGCGTGGCTCAAGACTTGAATGAACATTGAGAGACTGCGAATTTTCC
TTCTTCCGCATCGCCTACTACTTACTACCACCCAACGTGTAGATAGGGAT
GCAACGACAAGGAGGAGTTAAACTAAGCGCACTCAGGTTGAGACGTCGAG
CCCCTCTGAAAGTGTGACGTCAACACTTGAATCCGGCAAGTGTATAGTGC
GTGTATGAAGACTTGGGGAGGGTGGGAATATCGCATGTTTACTCATCTCG
TTGAAAGTGCAGACACATACTTCTCGACGTCAATCAGCTCCTTCCCCCCC
TTCAAAACTTAACTAGGGTGGGAGGCCACGCGGTAGGTATCACCTCCCCG
CGGCCCCCTCCCCCTTCCTTCCACCTGAGACAAAGATAATGTGTAGTAAC
AGTAACTGCGCGTGCCTTTTCTCTTTGCGTCTTCACCGCAAACGGCAAAA
GGCTCAGCGGCCGAATATCCAAAAATCGATAGGGTATCATTAGTATATCC
TCTACCCTCTACCCTCGACTCTTCTTGCTGCAAGTCGTCGAAGAACACAC
ACATGCTACAGCAACTTAATTAAGAAACGTAAAGGGTTGGGACAGGGACG
GTGGTCTCCTCGAATTGGAGCCACGAAAACAATAGCAAGCAAAAGGCAAG
CCACCCGTCACAGTGCAGCAGCACCGCGCGCCGTGCGCGTCGCAACGACA
CCCACCCGGTGCAAAGCTGCGAAGGCAGCTCTTTGCGCAGCCACAAGCAA
GCACGTTACCGTTAAGCGTGGTAGATAGTACCAGGCAGCTCGAACTACTC
GAACGGGTACAGACCCTGGGGTAAAATCCAACCCACGGGGCACTCCGGAG
TCTCGGCCCTTACGCCCCCCCCCCCCCCCCGCCCCCCCGAATGGGAACGT
CATCCGGCGTACGAAAAACACGTTAATACAAAATAATTCACCATTGTAAG
GGTTTCGCACCAGCAACAGACGAAGCAAGTATTACAGTACTACACCACCG
AACACTAAACGCGCTGGTAGGTTTCTCATGTGCCAAGAGGTTATTACCCC
TCAACACCTGACCTGACCTGACCTCGCGAAATGGGAAAAGCGTTAGCCGT
GAACCAAAACCGTACTCGGGGTGCAAAGACAAGACAACCACCACTTCTAC
CTTAACGTTTCCGTTGTTCTCGGCCATGGTGTTTCTTTTTGCCTTCTCTC
CTCTCCTTCTCAAGAGAGAGAGGGAGAGAAGGCAACAAACAACACGACTA
CATGCACATCTGCAACGATCAGCACTCATCGTGCGAGAGCAATCGATCTA
GTCTACAACCTAGACCATTTTTTTCCCCCATTGCCTCCAGCCCCTCCGAA
AACAAACAGACGCTAGTTTTTGTGGTGCATCTGTGTACCGCATGCACAAC
AACGCCACTCACACACAAGAAGAAGTCATCGATGGACAAAAATGTTTCAA
GAAACCATCGAAGGACAGGCTCAAGATAATTTCGCGCGCACCGGGCAGGA
CACGGACAAAATGGGTCGTGGTGCGTACGCAAAAGTGAGTCTGCCCATCT
ATCCAACCGCGTGCCCCGCCGCCACCACCCTTACACGGATTAGGACTCCC
AGCAAATCCAGGAAACAAGCGAATGACCCCCCTAAAAAAAACACGCACAC
GCACACACAACGCGAGGATTTCTACACCACTGAATTTTGTGCCTCGTCAC
GGATTTGAAGTTCCGAACATAAAAAAAACAAAAACAACACCGAACAAAAC
GCGTATTAAGGGGACGACGCTTCTATCTGGCAGAGGGAAAGGAAAGGGCA
AACCAAACACTCGAAACACTCGATTCCTTCCCCAAGTTTCGTGTGGCTTG
TATTCGGGTCGTAGCAGTCACACGCTCTCCTTAACCTTAACGAGTGTCGT
GCGGTTTGAATTCCGGTAGCCAACGCTCTGACGGCCGGCGGCCGGCCGGC
CGTCTCTCTCTCTCCCTGTCGCCATTCTTAAGTCCATGCGATCGGATCGG
GCGAGTTTGTAGGTAGTTCCA
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protein sequence of Ec-28_000510.1

>Ec-28_000510.1 ID=Ec-28_000510.1|Name=Ec-28_000510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=257bp
MGVVSPHEVQLLKFGTTMRRKHWTHGIYPRALLDTTGTLQATSASLHGKR
AVGVLFSARWCRGLGSKLALFYHACLQRDQDAFEVVFVSNDRDARAFRAY
REGMPWLAVPYGETAATARLAGACKVRGTPSLAVFDGATGELLTALGAAD
VSDPGALADPLAVIGRWLREDERDDSRSPSAQGEGREGARPRSRSSSSEV
LLSSRVPAAWVLATVFIAAAAAACGIAMAVALYKPPPARTMELRRIPPSR
PTCIKR*
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mRNA from alignment at chr_28:514464..520560-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000510.1 ID=Ec-28_000510.1|Name=Ec-28_000510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6097bp|location=Sequence derived from alignment at chr_28:514464..520560- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TCCGATATCGTAGAATCGATCAATTCCTTTGAACGGGTAGAACGGGATTG
TCCTCGCTATACGCTGAGCCTCTGGCCCATCTGGCATGTACGTTTCCTCC
ATAGGCAAAGGGTGCGTCGGTGCTTGTGCGTGATGCCCGGCTTGAACAGC
AGTGACGACACAGCGCGCACGTTGGGGGGGGGGGGGGCAAAAGGACGTAT
CCCCGCATCTCCGAGCTGAGAGAACCAAGTAAAAACGGAGATCCTTCGCG
ACTTGCAGAGATTTGCGCCGGAGCGAGAGCCAGCGACAAACAAAACCCCT
TACCGGGAGAGATGGGGGTCGTGTCGCCACACGAAGTGCAGCTGCTCAAA
TTCGGAACCACCATGAGACGAAAACATTGGACCCATGGTATCTATCCGAG
AGCGTTGCTGGACACAACTGGAACTCTCCAGGTGCACCCAGGAAGCCTGC
ACCATGTTCTTTGTAAACAACGATAGATATCGCCTGAAGTTAGACTCTGT
TGTACACACATGAGCAAGACACACGGGGCGTGCTTCCTCTAGGCATTGAT
TCATCAACAACTAAAGTGCATGCGTTTCTCGAGGGACTCGGCCAGATGTT
TGTCTTCAGTTGGCGGTGTTCAAGTTTAAAACCTCTGATCTGTTTTCGGT
TGTTGCCAGGTTGGCGCTGCGTTTTCTAGCCGCTGTTTGATGCTGGGTGG
GTCAGAGAAGGCTCACCGTATTTTTAACAGAGATCGTTACACGCACACGG
CAAGAGCCAGTACATTACAAGGGTAAAATCCAACCCGATGCGTGGGCATG
TGCAGCTGACTCATCGACGCAATCGTATCGTGCAGGCAACATGCCCACGA
GCATGTTGACACCGTTGGCAATATGCAAGCAATGACACATCCATGGTCGG
TAGGCTTGGCGAACATACGGGGGGTGTCTGTTTGCCGCGAGGTCCCGTGA
TGAACCCTTGTTGTTCTTGTTTCCCGACCACTATTGTTGAGACGAGTTCT
TGTTCTACCTTTTTGTACCCCACCGCCGACGAACGGCGGCGTGCCAGATG
CCGGTAGGGGATCGAAGTGGCCCCTTTCGTTTGCAAGAGACGTTTCACCT
TTCTTTCCGTTTCTCCCCCCCAGGCCACTTCTGCGTCCCTCCACGGGAAG
AGGGCCGTCGGAGTTCTGTTCTCGGCCAGGTGGTGCAGGGGCTTGGGCTC
GAAGCTGGCTCTGTTCTACCACGCCTGTCTCCAGCGCGACCAAGACGCTT
TCGAGGCGAGAGAACGATTTTGTTTTCAGGACGAGCGCAGTAATACCCCG
CTAAGCCATGCGTCCGTGGTTCGTTCGGCGTTGTGTTACGCGCCCCTGCG
ATTCTTCTTCCGTGGTTAGCGGCGCATCTCCTCCAGCGGTCTCATCCAAG
AAAAAAAGGCTGGCCGGTTTGGTCCTTCACCACTGGCTGATGGATCAATC
AATCTCGATCGGCGGTGGAATATTTTCGGGGTTGAAGAAATCCACCTCCC
ACTTTTGGAGTGGGCGACCTCTTGCCGGTTCTGAGCTATTCCTCGCGGGA
ATCAGCTGAAAAGAAGGTCCAGGCGGACATCACTACAAGTAGGCCCAGAC
GCGCAACCCATCTCTGCTGCAGTTGTTTTCTGTTATCTTCGGACGAGCGT
GACACAGCAGTGTCGTGCCCCCTCTTAAATAAGCCCCTAATATCCAGCTG
ATCGTCGTTTCATGCTCTTTGCTGCAACTCCAGAGCTGAATAAGACCCTA
CTTTGCCGCCCTCAAACCTCCGATGGACTCCCCTCCTCGAAGCTGCCGTA
CTCTTCATTTCGTCCCGACTGCCTTGTGTTGCTGCGATTCACGCTCTGTC
CATGCACGCGGGGACGGGCCGGGATCGTTGCAGGTTGTGTTCGTGAGCAA
CGACCGAGACGCAAGGGCGTTCCGAGCCTATCGTGAGGGCATGCCATGGT
GAGATACCGTGGCGAACCTCGCCGAGATTCGTGTCACGCTACCGCTTGTT
AACCAACGTAGACCATGCCTAGCTGGATCCGTGTGTTCATCGTTGCTTGA
CCCGTTTTACGTTGCGCGGCGGTTTTCGACGACGTTTTCTTCAGGCTTGC
CGTGCCTTACGGAGAGACTGCGGCCACGGCTAGACTTGCCGGAGCTTGTA
AGGTATGGTGATGATGCGGTTGGCTAATTTTATTGAGTTTTCCGCACGGC
TCTTGCCAAGATATAGCTGTCAGAGCTATGGGGGGGGGCGCACGTTTTTT
CTTTAACGCCATAGAACGGCTGGGGAGCTACGACCCTGTGTGCCTCCCTC
TTTCGCACTGACTGGGCGTGGCGGTCACGAAGGCTGATTTCTTCCGCTAT
TATAGTAGTCCAGCACGCGCACGCAAGGCACATCCAAATTTCCCCTCGTA
GTGTTTCATAGGTTGCAGTCGTCTACAACAACGGTAGTAGTGAGCGTCGA
GACGGAAACAGACGAGAGGTTTTCCTTCGCCGGTGTGTTCTTTGGCCTTT
TTCAAGCGAGGTTGGGGTCCAGCTTGTCCTCCATACGACCCATGTTTTCG
GTGCTGTGCCTTCGGCCCCGTGAAATCAATCGGATCGCATCCATCCATGC
TTCTTTCCCTCTAATCAAGAGCAGAAGAACCGATCGTTCTTGCGTTGCTT
CGATCGCGTGCACATGATGCGGTGAATGCCACAGGTGCGAGGAACTCCAT
CGCTGGCGGTCTTCGACGGGGCCACGGGAGAGCTCCTGACGGCCTTAGGC
GCCGCCGATGTGTCTGACCCAGGCGCCCTGGCCGATCCTCTCGCGGTGAT
TGGAAGATGGTGGGTGTGGGATAGAGATAAATGCTAGTGCTGGGATGCAG
CAGGGATAATTGGCAGAGGCAGAGACGAAGACGGCGACAGGGATTTGTTT
AGGGCGGGGGGGAGGGATGTACTCATGGCCGTGCATGGCGTAGTCGTTAG
ACCATTGACCTCGCATAAGGGCAGAGAGAGACAAAACGTTGATTGATTGG
TTTGCTAATCGTTGTCCTTGTCATGTTTCGGACTACTACTGTAATGACGT
TGCTCGTGCTCCTCACCTAAGCAAGAAACGTCAATGATAGCGTTGCACTC
CCTCCGCCAACCGTCTTCTTGTGCCTGAATCGAGCCAACCGTACCCGTCT
CAGGAACTGATGGCTACTTTCTAGCCTTTTCCCGACTAACTGCTAGCTGT
TTGTTGTGTTGCCTCTTTCTTTCTGTCTGTCTTGTTCGCACGCTTGTTTG
GGTGGTTGGTTTTGTTTCGCCTCTCTCTCTCGCCCAGGCTGCGTGAGGAC
GAGAGGGACGACTCTCGATCGCCGTCCGCGCAGGGAGAAGGCCGGGAAGG
GGCGCGACCACGATCGCGCTCGTCGTCCTCGGAGGTGCTGCTGTCGTCGC
GAGTACCAGCAGCATGGGTCCTGGCCACAGTCTTCATCGCCGCCGCCGCC
GCCGCATGCGGTATTGCCATGGCGGTGGCCTTGTACAAGCCTCCCCCGGC
CAGGACGATGGAGCTCCGGAGAATCCCGCCGAGCAGGCCCACTTGTATCA
AAAGGTAGATGGGCGATAGATGTACCACGGCAGCAGAGATTGAGGAAGGT
TGGGTGTCTATAGCCGAGGGATTTCCTAGGGGACGGAAGTCCGGCCCCGC
CGTCTTTGTCAACCCACGCCACGATGGTGGTGGTGCCGTAGAAGAAGCGG
AGAGTGCGAAGAAGGCCGCTTGGCCCAGCTATGAAGAAGAAAGAACTTTA
CCCAGGCGCCGGCAGCTATGCATTTAGCTGCAGCTAGCTCGTGTGTACGG
ACGTCCGTGAAGCGGGGGTACGTCCGGAAGAGAGAGAGAGGCGTTCTCGC
TACAAGCATTCGTATTATTATAACAGGAAAGGAAGAGTGAGAAGGGGTCA
CACAACAAGACACCCCAGCGGGCTAAATTGGGGCTGTCTGTGCACAGTGG
ACACTTTATATCATCACATCGATCGATACCTTGATGCACGAAGCCGACGA
AACGCGTCCCGCTGTCAAATCCATCCATTTACGCCACGAAACTTGCGTGG
CAGGTGATGAGCGCTCCCACGCGGGCGGTGGCGTGGCTCAAGACTTGAAT
GAACATTGAGAGACTGCGAATTTTCCTTCTTCCGCATCGCCTACTACTTA
CTACCACCCAACGTGTAGATAGGGATGCAACGACAAGGAGGAGTTAAACT
AAGCGCACTCAGGTTGAGACGTCGAGCCCCTCTGAAAGTGTGACGTCAAC
ACTTGAATCCGGCAAGTGTATAGTGCGTGTATGAAGACTTGGGGAGGGTG
GGAATATCGCATGTTTACTCATCTCGTTGAAAGTGCAGACACATACTTCT
CGACGTCAATCAGCTCCTTCCCCCCCTTCAAAACTTAACTAGGGTGGGAG
GCCACGCGGTAGGTATCACCTCCCCGCGGCCCCCTCCCCCTTCCTTCCAC
CTGAGACAAAGATAATGTGTAGTAACAGTAACTGCGCGTGCCTTTTCTCT
TTGCGTCTTCACCGCAAACGGCAAAAGGCTCAGCGGCCGAATATCCAAAA
ATCGATAGGGTATCATTAGTATATCCTCTACCCTCTACCCTCGACTCTTC
TTGCTGCAAGTCGTCGAAGAACACACACATGCTACAGCAACTTAATTAAG
AAACGTAAAGGGTTGGGACAGGGACGGTGGTCTCCTCGAATTGGAGCCAC
GAAAACAATAGCAAGCAAAAGGCAAGCCACCCGTCACAGTGCAGCAGCAC
CGCGCGCCGTGCGCGTCGCAACGACACCCACCCGGTGCAAAGCTGCGAAG
GCAGCTCTTTGCGCAGCCACAAGCAAGCACGTTACCGTTAAGCGTGGTAG
ATAGTACCAGGCAGCTCGAACTACTCGAACGGGTACAGACCCTGGGGTAA
AATCCAACCCACGGGGCACTCCGGAGTCTCGGCCCTTACGCCCCCCCCCC
CCCCCCGCCCCCCCGAATGGGAACGTCATCCGGCGTACGAAAAACACGTT
AATACAAAATAATTCACCATTGTAAGGGTTTCGCACCAGCAACAGACGAA
GCAAGTATTACAGTACTACACCACCGAACACTAAACGCGCTGGTAGGTTT
CTCATGTGCCAAGAGGTTATTACCCCTCAACACCTGACCTGACCTGACCT
CGCGAAATGGGAAAAGCGTTAGCCGTGAACCAAAACCGTACTCGGGGTGC
AAAGACAAGACAACCACCACTTCTACCTTAACGTTTCCGTTGTTCTCGGC
CATGGTGTTTCTTTTTGCCTTCTCTCCTCTCCTTCTCAAGAGAGAGAGGG
AGAGAAGGCAACAAACAACACGACTACATGCACATCTGCAACGATCAGCA
CTCATCGTGCGAGAGCAATCGATCTAGTCTACAACCTAGACCATTTTTTT
CCCCCATTGCCTCCAGCCCCTCCGAAAACAAACAGACGCTAGTTTTTGTG
GTGCATCTGTGTACCGCATGCACAACAACGCCACTCACACACAAGAAGAA
GTCATCGATGGACAAAAATGTTTCAAGAAACCATCGAAGGACAGGCTCAA
GATAATTTCGCGCGCACCGGGCAGGACACGGACAAAATGGGTCGTGGTGC
GTACGCAAAAGTGAGTCTGCCCATCTATCCAACCGCGTGCCCCGCCGCCA
CCACCCTTACACGGATTAGGACTCCCAGCAAATCCAGGAAACAAGCGAAT
GACCCCCCTAAAAAAAACACGCACACGCACACACAACGCGAGGATTTCTA
CACCACTGAATTTTGTGCCTCGTCACGGATTTGAAGTTCCGAACATAAAA
AAAACAAAAACAACACCGAACAAAACGCGTATTAAGGGGACGACGCTTCT
ATCTGGCAGAGGGAAAGGAAAGGGCAAACCAAACACTCGAAACACTCGAT
TCCTTCCCCAAGTTTCGTGTGGCTTGTATTCGGGTCGTAGCAGTCACACG
CTCTCCTTAACCTTAACGAGTGTCGTGCGGTTTGAATTCCGGTAGCCAAC
GCTCTGACGGCCGGCGGCCGGCCGGCCGTCTCTCTCTCTCCCTGTCGCCA
TTCTTAAGTCCATGCGATCGGATCGGGCGAGTTTGTAGGTAGTTCCA
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Coding sequence (CDS) from alignment at chr_28:514464..520560-

>Ec-28_000510.1 ID=Ec-28_000510.1|Name=Ec-28_000510.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=771bp|location=Sequence derived from alignment at chr_28:514464..520560- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGGTCGTGTCGCCACACGAAGTGCAGCTGCTCAAATTCGGAACCAC
CATGAGACGAAAACATTGGACCCATGGTATCTATCCGAGAGCGTTGCTGG
ACACAACTGGAACTCTCCAGGCCACTTCTGCGTCCCTCCACGGGAAGAGG
GCCGTCGGAGTTCTGTTCTCGGCCAGGTGGTGCAGGGGCTTGGGCTCGAA
GCTGGCTCTGTTCTACCACGCCTGTCTCCAGCGCGACCAAGACGCTTTCG
AGGTTGTGTTCGTGAGCAACGACCGAGACGCAAGGGCGTTCCGAGCCTAT
CGTGAGGGCATGCCATGGCTTGCCGTGCCTTACGGAGAGACTGCGGCCAC
GGCTAGACTTGCCGGAGCTTGTAAGGTGCGAGGAACTCCATCGCTGGCGG
TCTTCGACGGGGCCACGGGAGAGCTCCTGACGGCCTTAGGCGCCGCCGAT
GTGTCTGACCCAGGCGCCCTGGCCGATCCTCTCGCGGTGATTGGAAGATG
GCTGCGTGAGGACGAGAGGGACGACTCTCGATCGCCGTCCGCGCAGGGAG
AAGGCCGGGAAGGGGCGCGACCACGATCGCGCTCGTCGTCCTCGGAGGTG
CTGCTGTCGTCGCGAGTACCAGCAGCATGGGTCCTGGCCACAGTCTTCAT
CGCCGCCGCCGCCGCCGCATGCGGTATTGCCATGGCGGTGGCCTTGTACA
AGCCTCCCCCGGCCAGGACGATGGAGCTCCGGAGAATCCCGCCGAGCAGG
CCCACTTGTATCAAAAGGTAG
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Synonyms
The feature 'Ec-28_000510.1' has the following synonyms
Synonym
Esi0098_0005
Esi_0098_0005