Ec-28_000330.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000330.1
Unique NameEc-28_000330.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length292
Homology
[Close]
BLAST of Ec-28_000330.1 vs. uniprot
Match: D7FIH8_ECTSI (Coated vesicle membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH8_ECTSI)

HSP 1 Score: 528 bits (1359), Expect = 1.430e-187
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 2 
Query:   41 MMGRRGGPGAARVARWHGPLRVTSVCLVALLVTSVNSMTMDVDDGSIACAIVVAKQGNTINANFEVLGYPVKNTMVILQKRGDNKLLYRKEDLGEDYFRVDATNDGDYELCFINGGEERIKSLRNKLVPEVNSFVGLNALRQEKXXXXXXXXXXXXXXXXXXXXXXXELLDGLSDDMPSWYAKESGYKTFGFGLRLGKDVEDLQSMADVSVEDKVMASFLAEEADILVETLSVFNDHESYMRGREEYHRENVKQTSSRLMWCTFVEAAVLVWVSWTQLSYIRRFFETKRIL 913
            MMGRRGGPGAARVARWHGPLRVTSVCLVALLVTSVNSMTMDVDDGSIACAIVVAKQGNTINANFEVLGYPVKNTMVILQKRGDNKLLYRKEDLGEDYFRVDATNDGDYELCFINGGEERIKSLRNKLVPEVNSFVGLNALRQEKXXXXXXXXXXXXXXXXXXXXXXXELLDGLSDDMPSWYAKESGYKTFGFGLRLGKDVEDLQSMADVSVEDKVMASFLAEEADILVETLSVFNDHESYMRGREEYHRENVKQTSSRLMWCTFVEAAVLVWVSWTQLSYIRRFFETKRIL
Sbjct:    1 MMGRRGGPGAARVARWHGPLRVTSVCLVALLVTSVNSMTMDVDDGSIACAIVVAKQGNTINANFEVLGYPVKNTMVILQKRGDNKLLYRKEDLGEDYFRVDATNDGDYELCFINGGEERIKSLRNKLVPEVNSFVGLNALRQEKXXXXXXXXXXXXXXXXXXXXXXXELLDGLSDDMPSWYAKESGYKTFGFGLRLGKDVEDLQSMADVSVEDKVMASFLAEEADILVETLSVFNDHESYMRGREEYHRENVKQTSSRLMWCTFVEAAVLVWVSWTQLSYIRRFFETKRIL 291
[Close]
BLAST of Ec-28_000330.1 vs. uniprot
Match: A0A836CQY8_9STRA (Transmembrane emp24 domain-containing protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQY8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.410e-9
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 2 
Query:  698 LAEEADILVETLSVFNDHESYMRGREEYHRENVKQTSSRLMWCTFVEAAVLVWVSWTQLSYIRRFFETKRIL 913
            + + ++ LV  L    DH++YMR RE+ HRE +  T+ RL+  T  EA +LV ++  Q+SYIR+FFE KR++
Sbjct:    1 MIDASEELVNDLYTMVDHQTYMRQREQSHRETIDSTNRRLLLWTIAEALLLVSMAMWQVSYIRQFFEVKRMM 72
[Close]
BLAST of Ec-28_000330.1 vs. uniprot
Match: B8C202_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C202_THAPS)

HSP 1 Score: 67.4 bits (163), Expect = 1.240e-8
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 2 
Query:  584 AKESGYKTFGFGLRLGKDVEDLQSMADVSVEDKVMASFLAEEADILVETLSVFNDHESYMRGREEYHRENVKQTSSRLMWCTFVEAAVLVWVSWTQLSYIRRFFETKRIL 913
            AK+   +  GF +R+      L   A     D  + S L E +D L+E L    DH+ YMRGRE  H      T +R++  T +EA VL+ +S+ Q+ Y+++FFETKR L
Sbjct:  116 AKDGIDREVGFAIRVLPPQRGLDGEAG---PDDRLTSHLIEMSDKLMEGLHTMADHQEYMRGRENRHSVLADTTFNRIVQWTVLEAVVLILISFGQVLYLKKFFETKRHL 222
[Close]
BLAST of Ec-28_000330.1 vs. uniprot
Match: A0A7S1CB01_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CB01_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.170e-8
Identity = 39/107 (36.45%), Postives = 54/107 (50.47%), Query Frame = 2 
Query:  584 AKESGYKTFGFGLRLGKDVEDLQSMADVSVEDKVMASFLAEEADILVETLSVFNDHESYMRGREEYHRENVKQTSSRLMWCTFVEAAVLVWVSWTQLSYIRRFFETK 904
            AK    KT  F L  G        +A+V        + L  E   L + ++   D + YMR RE  HR+  + T+SR++W TF+EAAVLV +S  Q+  I   FETK
Sbjct:   14 AKTKTQKTIAFNLHAGASAAGAADLANVG-----HITPLQREVTQLRDAVTAVQDEQQYMRSREAVHRDTTESTNSRVLWFTFLEAAVLVIMSAWQVWTILGQFETK 115
[Close]
BLAST of Ec-28_000330.1 vs. uniprot
Match: A0A7S1CB40_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CB40_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.150e-7
Identity = 39/107 (36.45%), Postives = 54/107 (50.47%), Query Frame = 2 
Query:  584 AKESGYKTFGFGLRLGKDVEDLQSMADVSVEDKVMASFLAEEADILVETLSVFNDHESYMRGREEYHRENVKQTSSRLMWCTFVEAAVLVWVSWTQLSYIRRFFETK 904
            AK    KT  F L  G        +A+V        + L  E   L + ++   D + YMR RE  HR+  + T+SR++W TF+EAAVLV +S  Q+  I   FETK
Sbjct:   99 AKTKTQKTIAFNLHAGASAAGAADLANVG-----HITPLQREVTQLRDAVTAVQDEQQYMRSREAVHRDTTESTNSRVLWFTFLEAAVLVIMSAWQVWTILGQFETK 200
[Close]
BLAST of Ec-28_000330.1 vs. uniprot
Match: A0A7S1TXQ7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXQ7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.170e-7
Identity = 36/109 (33.03%), Postives = 59/109 (54.13%), Query Frame = 2 
Query:  587 KESGYKTFGFGLRLGKDVEDLQSMADVSVEDKVMASFLAEEADILVETLSVFNDHESYMRGREEYHRENVKQTSSRLMWCTFVEAAVLVWVSWTQLSYIRRFFETKRIL 913
            K++G    GF  R   +++    +A   +E              +++ L   +DH+SYMR REE HR+  + T+ R++  T VEA VL  ++  Q+ YIR+FFE KR++
Sbjct:  110 KKAGSVEVGFAYRKSAEIKSTTDLAATVME--------------ILQGLQDLSDHQSYMREREELHRDISESTNYRVLVWTLVEAIVLGIMTIWQIMYIRKFFEVKRVV 204
[Close]
BLAST of Ec-28_000330.1 vs. uniprot
Match: A0A7S1YMF7_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1YMF7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.740e-7
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = 2 
Query:  611 GFGLRLGKDVEDLQSMADVSVEDKVMASFLAEEADILVETLSVFNDHESYMRGREEYHRENVKQTSSRLMWCTFVEAAVLVWVSWTQLSYIRRFFETKRIL 913
            GF +R+      ++  A     D  + S L E ++ L+E L    DH+ YMR RE  H      T +R+   TF+EA VLV +S+ Q+ Y+++FFE +R L
Sbjct:  124 GFAIRVVPPQRGIEGEAG---PDDRLTSHLIELSEKLMEGLDTMTDHQEYMRERENRHAVLADSTFNRVKEWTFLEAIVLVLISFGQVLYLKKFFEQRRYL 221
[Close]
BLAST of Ec-28_000330.1 vs. uniprot
Match: A0A4P9VYA0_9FUNG (Supernatant protein factor, C-terminal domain-containing protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9VYA0_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 1.360e-6
Identity = 27/72 (37.50%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:  698 LAEEADILVETLSVFNDHESYMRGREEYHRENVKQTSSRLMWCTFVEAAVLVWVSWTQLSYIRRFFETKRIL 913
            L EE   + + +    D ++Y+  RE  HR+  + T+SR+ W +  E AVL+ V   Q+SY++RFFE KR++
Sbjct:  134 LQEEVRQMADGIRAIRDEQAYLMQREAMHRKTAESTNSRVAWWSLFETAVLIAVCIFQVSYLKRFFEVKRLV 205
[Close]
BLAST of Ec-28_000330.1 vs. uniprot
Match: A0A4P9Y5D7_9FUNG (Putative COPII-coated vesicle protein n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y5D7_9FUNG)

HSP 1 Score: 57.0 bits (136), Expect = 5.110e-6
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 2 
Query:  698 LAEEADILVETLSVFNDHESYMRGREEYHRENVKQTSSRLMWCTFVEAAVLVWVSWTQLSYIRRFFETKRIL 913
            LA E   L   L    D +SY+  RE  HR+  + T+SR+ W +F +  +L  V + Q+SY++RFFE KR++
Sbjct:  120 LANEIRQLTRHLQEVRDAQSYIVIRERMHRDTAESTNSRVKWWSFFQVILLATVCFFQISYLKRFFEVKRLV 191
[Close]
BLAST of Ec-28_000330.1 vs. uniprot
Match: A0A177WE87_BATDL (GOLD domain-containing protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WE87_BATDL)

HSP 1 Score: 55.5 bits (132), Expect = 2.460e-5
Identity = 26/94 (27.66%), Postives = 53/94 (56.38%), Query Frame = 2 
Query:  632 KDVEDLQSMADVSVEDKVMASFLAEEADILVETLSVFNDHESYMRGREEYHRENVKQTSSRLMWCTFVEAAVLVWVSWTQLSYIRRFFETKRIL 913
            K + D++      ++++ M  F      IL++ +    D +S++  R+  HRE ++ T  R++W +F +  +++     Q+ Y+RRFFETKR++
Sbjct:  127 KIIRDMKKDNTKEIDEEQMDLFRT--LQILMDNIRFMRDEQSFLLKRQNRHRETIQSTHGRVLWWSFGQIVMVLIACGFQVLYLRRFFETKRVV 218
The following BLAST results are available for this feature:
BLAST of Ec-28_000330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FIH8_ECTSI1.430e-187100.00Coated vesicle membrane protein n=1 Tax=Ectocarpus... [more]
A0A836CQY8_9STRA1.410e-943.06Transmembrane emp24 domain-containing protein 2 n=... [more]
B8C202_THAPS1.240e-837.27Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1CB01_9STRA2.170e-836.45Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1CB40_9STRA1.150e-736.45Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1TXQ7_9STRA1.170e-733.03Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1YMF7_9STRA2.740e-735.64Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A4P9VYA0_9FUNG1.360e-637.50Supernatant protein factor, C-terminal domain-cont... [more]
A0A4P9Y5D7_9FUNG5.110e-638.89Putative COPII-coated vesicle protein n=1 Tax=Pipt... [more]
A0A177WE87_BATDL2.460e-527.66GOLD domain-containing protein n=2 Tax=Batrachochy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:377441..384013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue7.4e-09
Seed eggNOG ortholog35128.Thaps22589
Length1042
KEGG koko:K20347
KEGG TC9.B.188.1.2
Hectar predicted targeting categorysignal peptide
Gene idEc-28_000330.1
EggNOG free text desc.emp24/gp25L/p24 family/GOLD
EggNOG OGs2XDE6@2836,KOG1692@1,KOG1692@2759
COG Functional cat.U
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000330Ec-28_000330Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 377441..384013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000330.1Ec-28_000330.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 377566..383972 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000330.1.8Ec-28_000330.1.8Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 377441..377690 -
Ec-28_000330.1.7Ec-28_000330.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 378138..378245 -
Ec-28_000330.1.6Ec-28_000330.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 378566..378637 -
Ec-28_000330.1.5Ec-28_000330.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 379646..379724 -
Ec-28_000330.1.4Ec-28_000330.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 380193..380286 -
Ec-28_000330.1.3Ec-28_000330.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 380930..381053 -
Ec-28_000330.1.2Ec-28_000330.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 381659..381737 -
Ec-28_000330.1.1Ec-28_000330.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 383778..384013 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0003303UTR:Ec-28_000330.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 377441..377565 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000330.1CDS:Ec-28_000330.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 377566..377690 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0003305UTR:Ec-28_000330.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 383973..384013 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000330.1 ID=Ec-28_000330.1|Name=Ec-28_000330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=292bp
MMGRRGGPGAARVARWHGPLRVTSVCLVALLVTSVNSMTMDVDDGSIACA
IVVAKQGNTINANFEVLGYPVKNTMVILQKRGDNKLLYRKEDLGEDYFRV
DATNDGDYELCFINGGEERIKSLRNKLVPEVNSFVGLNALRQEKKKKALA
QQREDEDDDSFFYRDDEELLDGLSDDMPSWYAKESGYKTFGFGLRLGKDV
EDLQSMADVSVEDKVMASFLAEEADILVETLSVFNDHESYMRGREEYHRE
NVKQTSSRLMWCTFVEAAVLVWVSWTQLSYIRRFFETKRIL*
back to top

spliced messenger RNA

>Ec-28_000330.1 ID=Ec-28_000330.1|Name=Ec-28_000330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1042bp|location=Sequence derived from alignment at chr_28:377441..384013- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CAGCAGAGACAACATAGGCTAGAGCTTGTGTGTGCTGCGCCATGATGGGA
CGAAGAGGAGGGCCAGGGGCTGCACGGGTTGCAAGATGGCATGGGCCGCT
GCGAGTTACTTCCGTGTGCTTGGTTGCTCTGCTGGTGACCAGCGTCAATT
CGATGACGATGGATGTGGACGACGGGAGCATCGCCTGTGCTATCGTCGTT
GCCAAGCAGGGCAACACCATTAACGCCAACTTCGAGGTCCTGGGCTACCC
TGTGAAGAACACCATGGTTATTCTTCAAAAGAGGGGCGATAACAAACTGC
TCTACAGGAAGGAAGACCTGGGCGAAGATTACTTCAGGGTAGATGCCACG
AACGACGGGGACTACGAGCTTTGCTTCATCAACGGGGGCGAGGAACGCAT
CAAATCGCTACGCAACAAACTCGTGCCGGAAGTGAACAGTTTCGTCGGCC
TGAACGCCCTGCGCCAAGAGAAGAAGAAGAAGGCGCTGGCGCAACAGCGG
GAAGATGAAGACGACGACTCCTTCTTTTATAGGGATGACGAGGAGCTCCT
CGACGGTCTGTCAGACGACATGCCCTCCTGGTACGCCAAGGAGTCGGGTT
ACAAGACTTTCGGGTTTGGGCTTCGACTGGGCAAAGATGTGGAAGATCTG
CAATCGATGGCGGACGTGTCGGTCGAAGACAAAGTGATGGCTAGTTTCCT
CGCGGAAGAGGCAGACATCCTCGTGGAAACTCTGTCCGTGTTCAACGACC
ACGAGAGCTACATGCGAGGCCGTGAGGAGTACCACCGTGAAAACGTGAAG
CAAACCAGCTCAAGGCTCATGTGGTGTACGTTCGTTGAAGCCGCTGTGCT
GGTGTGGGTGTCCTGGACCCAGCTGTCTTACATTCGCCGCTTCTTCGAGA
CCAAGCGCATTCTCTAGCCTGCCTTCGTTCTTGTTTTCACAGCGTGGCCC
CTTTTGTTGTGGAGTCGGTGAATTTTAGCGTGTTGTGTGTGTCTGCGTAT
GTGAATATTTCTTGTCTTGTGTGGAGACCACCTTCATAAAGG
back to top

protein sequence of Ec-28_000330.1

>Ec-28_000330.1 ID=Ec-28_000330.1|Name=Ec-28_000330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=292bp
MMGRRGGPGAARVARWHGPLRVTSVCLVALLVTSVNSMTMDVDDGSIACA
IVVAKQGNTINANFEVLGYPVKNTMVILQKRGDNKLLYRKEDLGEDYFRV
DATNDGDYELCFINGGEERIKSLRNKLVPEVNSFVGLNALRQEKKKKALA
QQREDEDDDSFFYRDDEELLDGLSDDMPSWYAKESGYKTFGFGLRLGKDV
EDLQSMADVSVEDKVMASFLAEEADILVETLSVFNDHESYMRGREEYHRE
NVKQTSSRLMWCTFVEAAVLVWVSWTQLSYIRRFFETKRIL*
back to top

mRNA from alignment at chr_28:377441..384013-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000330.1 ID=Ec-28_000330.1|Name=Ec-28_000330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6573bp|location=Sequence derived from alignment at chr_28:377441..384013- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CAGCAGAGACAACATAGGCTAGAGCTTGTGTGTGCTGCGCCATGATGGGA
CGAAGAGGAGGGCCAGGGGCTGCACGGGTTGCAAGATGGCATGGGCCGCT
GCGAGTTACTTCCGTGTGCTTGGTTGCTCTGCTGGTGACCAGCGTCAATT
CGATGACGATGGATGTGGACGACGGGAGCATCGCCTGTGCTATCGTCGTT
GCCAAGCAGGGCAACACCATTAACGCCAACTTCGAGGTATGAGGCACTTC
GGTTACCAAGCAGCGCCTTTCGGTTAGGAAGAAGATATTTCCCAAACACC
TTTGGCGATAGACTGCCCCTTGAAATCCGTCGCAGCAGGACGTATCCCCC
GCATGCCCGACTCTACATAGACGCACAGACACCGACCGGTTCATAGAACA
AGCTTGGAACTCCTCGCACATTTGGAGCTCAACACGCGAGCGAAACAGAC
GGCAGCCAGCAGCAGCAGCGGTTCAACGAAAGACAAATTGGGACGAAATG
CGGCGAACCGTCGACCGGAGTGTTGCATCCTCGATTGGTTTAGTCGGGAG
ATGGCATTTTTGCGGGGGAACTCAATCGAGAATTCTGCTCCCTGCTCCCC
ACCTTGTGGTGGGATTCGGACATGTTCCTCGGCTGCGATACTGTTTTGGA
AGCGGACAACGCGATTGGCTTTCTACTTTTTACACGACACGAAATATAAA
CGCAACAAGTTGCTGTTAGTTCAAAATATATATGTAGTTTCCCGTGGGCG
GTGTCACGCTCCCGTCGAACAACGAGAGGCCGCCATTCCATTCGGTCGCC
CCGGTGGTCTAGTTGGTATCCTCGAAACTTTCTGAAGGTTAGGTCAGTGG
TTCGAATCCCGGCGTGAGTGAGCTTTTCTTGCAAAGTGAGTTTTCCTCTC
GCTTCCGCTCCTGCCCTATATTGTGGATAGCGCTAGTTGGTGTGTACACA
GAGGGAAGAGAGTGCTGAACTCTTCTCGCATTAAAAATCGCAGGCAAGGT
ACCGCAGGAGGGGAGGGTAGAGAGGAGCCCTTCTGTGTGACCACGCGTTG
GAGTAAACGGCAACTAGTTCTGTGAGCGCTGATTTAAGTGAAGAAGAAAA
AAAAATGCATATGTAGCCTGTGTACGCGGGTATTCCTCACACCTCAGAAG
TTCTACAGTAGACACCAACCGTCACGCTCGCCTGCCCCACGTTGATACAC
TGCAGCGCATTCAGCCGCGATGCTGTTTATTCCAAGCTGTGCGTGAGCGG
TATCCCGCCGTAGTTTACTGATATTGAATAATGTTTTGCTCTTTTAGAGA
CAGGAGTGTTGGTATTTTCACAGCAGCTGTCAATATGGGTTCGCTGATAA
GCTACGGACATGAGCCCGCTTGCGACTGTGTTGGCGTTGGCACGGTCACA
TTTCCAACGAAAGCAACAACTAAATGACCGGCGAACACCACGAGCCCTTG
CCCCGGACGATGCTCAAGCCACATCATGATACACCTTGCATGCCGAAATC
TGTCAGGAGCGCGCTCGCGCACGGAAGTACGTTTCGGGTGTGTTGTACTT
TTCTATCCTTCGCGTCTACCCTTCGCGTTTATCCTCAGCTGTGTGAGATC
GCCTCTTTCACACACTGCAGCCACTTGTACAATTCATAAGCTTGCACGTG
TCTCACCTTTGGTAGGACTGGCATCGGTGCAGTGCAGGGCGTCGGGCGAA
AGTGGAACGTGTCCCGGGAAGAACTCTTGACCCGTAGATGTGGCACACAC
GCCCCACCGTTCAAAGTACCGTAAGGAAGCGAGAGATGGCACCCCCGCTA
GACCGATTTTCGAAGCTCAAAGCTCGATTGCTCCCCAACCAAGCTTGTGA
AAACACCAACAATGGTGGCTTTGGAAACATTTCGTCAAGGGCTTTCCGTG
GACTTATCGGGCTATTTTCGCACCCACTTGTTTTGGGAGCAATCGAGCTT
TGAAAGTCGGTCTAGGCGGGGTGCCATCTCTCGCATCCTCCTGGTACCCG
GGATACGCAGGCTACCGCGCGGTGGATATCGTACAGAGTTCGTTGGGCAA
GCAAAGAATTGATGTTCGCACGCCGACGACGATCCGAAATGAGATTCCGT
AGAACGGCCGTACAGACTGGCTTTGCAAAGGCTTCTTAAAGGGACATCGT
GTCCCAGGCACAGCCGCTGAACTGCTGTTTCTCGTCAGTGGGATAATTCG
GCTCTTGATTGTGACACTTTACTTTTGCGTTCTGCCGGTCGGTCTGCGGT
TTTCGTGCGTACACGCTGCATATCAGGTCCTGGGCTACCCTGTGAAGAAC
ACCATGGTTATTCTTCAAAAGAGGGGCGATAACAAACTGCTCTACAGGAA
GGAAGGTAGGTGCATCGCCTCGGGGGTTAAATGCACCCTACACAGCATAT
GGGCGTTTGTTAGTGCGGATTCACGCGTCGTCCTTGTGGTTTCAACATTG
AACTTGTGGGATGGTTTGTGCGTGGGCTCTATTCCTCGTCCTCATGCTCC
GTTTTGAAAGAGCTGGCTGGATGTTGAGTTATTTTTTTACCGAGCAAAGA
TAACTGCTTGGCCCTGTTGGCCACACGAGCAGAAGGGGGGTGTACCACAG
CGGGAAAGCCACGGGGGGTTAGTGGGGAGGCAGGCTCAGGCGGAGCCAAG
GACGGCGGCTGTAGTCGGAGGCTAGGCTGGTGGAGACAAGCGATGGGACT
GACAACCAACAGAATAAAAAGCAAGTAACTATTGCTGCTCGACACTACTT
GCTCTCACTGTCGCTGTATTTCGAGATCAAGACTTGTTGTTGATGGCACG
ACTGGTACCTCCTGTGGTCCACACGTGCCGATTTTGTCTTCGGTGTCAGC
AGCGCCTTCTCTCTTTTCGTTCAAGCAGCTGCTCTTCTTCTTTCACCCGA
GCGCGTGCACTGCTCTAACGGAAGAGTGTGATATCCTCTTTGTTGCCTCC
GCCCACTCAGACCTGGGCGAAGATTACTTCAGGGTAGATGCCACGAACGA
CGGGGACTACGAGCTTTGCTTCATCAACGGGGGCGAGGAACGCATCAAAT
CGCTACGCAACAAACTCGTGCCGGAAGTGAACAGGTACTGCACCACTTTC
AAACCTATGATCTAGCCGTGCATACCTGATTTTCTTCCATGCACTGTTAA
GACTTCAACACATCCCCTTGGACTGCCGTGGTTTCACAGGTAGTCTTTCT
GTGTACGTGTATTTTCTAATACCTACCCAAGTATTTGTTTTTGCGGCTAT
CCGGCTGCTGTCCTGCCTAGGGTCTCCTCGTAGAAGTGGTCTTCTTACTC
GCTTCGCCTCCCGTTACCTGGTTGGTGTTGTATCGGTGTCTCGACATAGC
TGGTGACCACCCGTGCTGGGGCCGGATAACAGCAGTGCTGCTGAAAGAGT
TTGGGATTTTGTTTTTGTCGTTCCTGCTATCTTCCGAATCATAGTGTTTC
GTGTCGGATATGTAGCGGCTGTTATACGGGGGTTTGCTGGTGAACGCTCC
AGCAGTTATAGCCACACACACCTGCACTCCTGAGGTCGTTGGAGGAGCGC
TGCTGCGAATAGTTCAAACCTCCCTAACCTCGAAGCCTGTGCGATACCGG
GAGTGGGTGCCGCATTTTTGCTGCATTCTGAACACTGTTGCTCCGGTGGT
GAAGCGCCGGTGGTCATGCGTAGTGCACATAGTTTGATCACCACCCGCCT
TGTTCCCGCTCTTGTATGCCATATTAGTTTCGTCGGCCTGAACGCCCTGC
GCCAAGAGAAGAAGAAGAAGGCGCTGGCGCAACAGCGGGAAGATGAAGAC
GACGACTCCTTCTTTTATAGGGTAAGAATTTATTCTGACGGTCGTTGACG
AAGGTAGGCAGGCGCCCACGACCAAGTAAATACATCCCGGGACGCATGGT
CGAGGATGCCTCGCCTGAGCGCGGAATCATGAACGCTGCTGCTGGCAAGG
TTCCCTGTGAGCGTTTGGTGACGGTTTGCCTTGATGTCCATTGGTGCCTG
GAGATTTCGACGGGCGCTACCAGCCATCTATACCGACTACACCACATGGC
AGTGCTGGCGCGGTCAGGCCTCGTGCAGGTGCTGCAGAGCGACGAATGTG
CTCCTTGTCTTGCTAGCCTTCCGCGTGACTTTAACCCCCCTGGCGCTCTC
GCCTGCGCTGTTGTCCGCCCACCTGCGGCTTTGCCTTGCATCTAATATCT
GTCCTGCCGACTGCCGGCCTTTTTTCTCCCGGCGGCGTGGTGCGCACACT
CACGGACGATTGGAATGTGCACCACGCGGCGTTTGGCAGGATGACGAGGA
GCTCCTCGACGGTCTGTCAGACGACATGCCCTCCTGGTACGCCAAGGAGT
CGGGTTACAAGACTTTCGGTGAGCTTGCTACAGAGACATGCATGTTTCCG
TCGAGAAGGAGAGCCTCAAGTTTTCACCAACATTAAGGCATTTAGGGGTA
CGATGCACAGCTCAGCAGTGGATCTCTACGCTGCACTCTTCATATTAACT
GTGCTAGACGGTGACGACCAACAAAGAGGTTGGGCCTGGACCCGACATTT
ACGTTTTGTTAGGTGCGGGAACGTACAGTACACTTCCTGGCACTCTGTCG
AGCTTGCTGTAATACCTGTTGCCGTTTTTCCCTTGAGTTTCATGGTGACA
GACATGATGCCCTTGCGTATTCCATGTCGGGTCCTCGAGTACGAAGGACC
GCAGCGCTCTTGGAAGTATGGCTCGTGCCGAAGCACTAAATGTTCATGCC
TTTTGTCGCATTGAAGCTCCGAGAAGTCTAGGGAGGTTTGGAGAATTGGA
ACCTGGGCCTCCACATGAAATGATGAGTTCATGAAACCATCGTGTGGGTT
GGTACATCACGGGGCAAAAAGTTGATTGTTTCTCTGTTCGCTCCTATATG
CACTTCCACACTTGTTGGGGGAAGCGGTAAGCGGTAAACGAAAAACACGG
CCGTTCCCCGTACTGCCGGTCGGTACTGTCACCGTGTTGATGCCATGTTC
GTTTTTTCCTGGGATGGTGTGGTGCCGTGACGACTTCTGCCGAGAAAAAG
CGCTTGGCCGTCTTTCTCTTGGAACGAAACTGGCCGGTTGGGCGGCGCCA
TATTTTCGGTGTCATGGATGAACGACGTACGCTGTCGCTTGCACGGTAGG
TAGGGTGCGATGAATGCTCTCCACGGCGTCCGTCACGTCGAGCACTCACC
CGGTTGTGTTTGTTGTCGATTGTTCTCGTTTGACGATGCTGTTCACGCTT
TTATCAATATCTCGCACATCACGTATGCCCGCTTTTTACACTACATCGGA
CGCATGATATTTGCCCCCGTCATGCTGCTCTGTCTTGTCAATTCTTGGAC
GTTTCGTGTTATCCTCTTGCTTCCAGGGTTTGGGCTTCGACTGGGCAAAG
ATGTGGAAGATCTGCAATCGATGGCGGACGTGTCGGTCGAAGACAAAGGT
GATGCACCAGTTTCATCTTTTCGTGTACCACCGTCATTGTCGCCGCAAGG
TTTTTTGGGGTCAAATCAAAGGCTGGACGTTCGCTGCCCAGAGTTCCCCC
AATCTCGAAACCTGTCTGCCTGTTTGCACGCATACGATTTCGTGTACACG
CACTACCATTGCTCTAGCAACAATAAATTCGTTGAACATGCCTCTCTGTC
CTCTCTTCGAAGAAACTCTTGCACCGGTTGTTGATTTTCGTGCGCTGTTT
TCGTTTTTCCCCGTGCTCGTCTGTTACCGCTGCCTTGTTTCGTGTCCGAA
TCGTGCGTCCACCAACAGTGATGGCTAGTTTCCTCGCGGAAGAGGCAGAC
ATCCTCGTGGAAACTCTGTCCGTGTTCAACGACCACGAGAGCTACATGCG
AGGCCGTGAGGAGTACCACCGTGAAAGTGAGGGTGATGGTGCCGACTGTC
GGCGATCTGCCTTGCACTCACTGGTACATTGTTCCTGGTGGTTGCGCTCC
ATGTACCATGGCGTAGTTGCGAAATAGTCGCGCATGCTCTACACGTGGGT
GCGGTGGCATGAGCCTGGCCCGTTCGATTCACGCGGCCTTAATGTTTCCA
GTGTTTTCCTGAGTGGTGAATATATGGATGAGTATGGAAGACATTCGCAA
GCAGGCTTGTCGCATGACGTGGCTCTGTGCTCTTTCACGCTCCTACCAGA
GCATGCTATCAAAAGGGGACATTGAGAGGTTCCCATTGCTTTTCCTAGCG
CAGCATCCACTGACCTTCCCTCTGTTGTCTTGGCAATGCCACCCTTGTTG
CCCGCTTGCGCTTGACGCGCGTCTTAATGCTACCCTCTTTCCTTCCGCTG
CTGCGATGCACGCCACGGACCAGACGTGAAGCAAACCAGCTCAAGGCTCA
TGTGGTGTACGTTCGTTGAAGCCGCTGTGCTGGTGTGGGTGTCCTGGACC
CAGCTGTCTTACATTCGCCGCTTCTTCGAGACCAAGCGCATTCTCTAGCC
TGCCTTCGTTCTTGTTTTCACAGCGTGGCCCCTTTTGTTGTGGAGTCGGT
GAATTTTAGCGTGTTGTGTGTGTCTGCGTATGTGAATATTTCTTGTCTTG
TGTGGAGACCACCTTCATAAAGG
back to top

Coding sequence (CDS) from alignment at chr_28:377441..384013-

>Ec-28_000330.1 ID=Ec-28_000330.1|Name=Ec-28_000330.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=876bp|location=Sequence derived from alignment at chr_28:377441..384013- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGGGACGAAGAGGAGGGCCAGGGGCTGCACGGGTTGCAAGATGGCA
TGGGCCGCTGCGAGTTACTTCCGTGTGCTTGGTTGCTCTGCTGGTGACCA
GCGTCAATTCGATGACGATGGATGTGGACGACGGGAGCATCGCCTGTGCT
ATCGTCGTTGCCAAGCAGGGCAACACCATTAACGCCAACTTCGAGGTCCT
GGGCTACCCTGTGAAGAACACCATGGTTATTCTTCAAAAGAGGGGCGATA
ACAAACTGCTCTACAGGAAGGAAGACCTGGGCGAAGATTACTTCAGGGTA
GATGCCACGAACGACGGGGACTACGAGCTTTGCTTCATCAACGGGGGCGA
GGAACGCATCAAATCGCTACGCAACAAACTCGTGCCGGAAGTGAACAGTT
TCGTCGGCCTGAACGCCCTGCGCCAAGAGAAGAAGAAGAAGGCGCTGGCG
CAACAGCGGGAAGATGAAGACGACGACTCCTTCTTTTATAGGGATGACGA
GGAGCTCCTCGACGGTCTGTCAGACGACATGCCCTCCTGGTACGCCAAGG
AGTCGGGTTACAAGACTTTCGGGTTTGGGCTTCGACTGGGCAAAGATGTG
GAAGATCTGCAATCGATGGCGGACGTGTCGGTCGAAGACAAAGTGATGGC
TAGTTTCCTCGCGGAAGAGGCAGACATCCTCGTGGAAACTCTGTCCGTGT
TCAACGACCACGAGAGCTACATGCGAGGCCGTGAGGAGTACCACCGTGAA
AACGTGAAGCAAACCAGCTCAAGGCTCATGTGGTGTACGTTCGTTGAAGC
CGCTGTGCTGGTGTGGGTGTCCTGGACCCAGCTGTCTTACATTCGCCGCT
TCTTCGAGACCAAGCGCATTCTCTAG
back to top
Synonyms
The feature 'Ec-28_000330.1' has the following synonyms
Synonym
Esi0120_0061
Esi_0120_0061