Ec-28_000260.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
Overview
Homology
BLAST of Ec-28_000260.1 vs. uniprot
Match: D7FIH2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIH2_ECTSI) HSP 1 Score: 112 bits (279), Expect = 1.440e-27 Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 Query: 1 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 171 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK Sbjct: 1 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 57
BLAST of Ec-28_000260.1 vs. uniprot
Match: H3HEF9_PHYRM (Uncharacterized protein n=18 Tax=Oomycota TaxID=4762 RepID=H3HEF9_PHYRM) HSP 1 Score: 83.2 bits (204), Expect = 1.030e-16 Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 1 Query: 1 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 171 MAK KA + IK+LS AGTGFFYT +KN R T KL+LRKYDP+VRQHV+F E KIK Sbjct: 1 MAKGKAKNVVIKMLSAAGTGFFYTTTKNPRNVTRKLSLRKYDPIVRQHVIFNEAKIK 57
BLAST of Ec-28_000260.1 vs. uniprot
Match: A0A836CCP4_9STRA (Ribosomal protein L33-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCP4_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.430e-16 Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 1 Query: 1 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETK 165 MA KKA IAIKLLSTAGTGFFYT KN R T KL+ RKYDP+VR+HV+FTETK Sbjct: 1 MAGKKATAIAIKLLSTAGTGFFYTTKKNPRTITRKLSFRKYDPIVRRHVMFTETK 55
BLAST of Ec-28_000260.1 vs. uniprot
Match: A0A7S1ZHZ1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZHZ1_TRICV) HSP 1 Score: 81.6 bits (200), Expect = 1.380e-15 Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 1 Query: 1 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 171 MA+ K IAIKLLSTAGTGFFYT KN+ K +K+ALRK+DPVVR+HV+FTE KIK Sbjct: 51 MARGKGRTIAIKLLSTAGTGFFYTTRKNITKTPHKVALRKFDPVVRRHVMFTEQKIK 107
BLAST of Ec-28_000260.1 vs. uniprot
Match: A0A833W4D1_PHYIN (Ribosomal protein L33 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A833W4D1_PHYIN) HSP 1 Score: 80.5 bits (197), Expect = 2.070e-15 Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1 Query: 13 KAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 171 KA + IK+LS AGTGFFYT +KN R T KL+LRKYDP+VRQHV+F ETKIK Sbjct: 32 KAKNVVIKMLSAAGTGFFYTTTKNPRNVTRKLSLRKYDPIVRQHVIFNETKIK 84
BLAST of Ec-28_000260.1 vs. uniprot
Match: F0WEM4_9STRA (Uncharacterized protein AlNc14C179G8192 n=2 Tax=Albugo TaxID=65356 RepID=F0WEM4_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 3.730e-15 Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1 Query: 1 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 171 MAK KA I IK++S+A TGFFYT +KN R KL+LRKYDP+VRQHV+F ETK+K Sbjct: 1 MAKGKAKNIIIKMISSANTGFFYTTTKNPRNVQRKLSLRKYDPIVRQHVIFNETKMK 57
BLAST of Ec-28_000260.1 vs. uniprot
Match: A0A8J5Y2T4_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y2T4_DIALT) HSP 1 Score: 79.7 bits (195), Expect = 4.930e-15 Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1 Query: 1 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 171 MAKKK R+ +KL+S AGTGFFYT +KN + +KL L KYDP+VRQHV+FTE KIK Sbjct: 1 MAKKKLARLVVKLVSDAGTGFFYTTTKNQKNTPDKLVLSKYDPIVRQHVLFTEGKIK 57
BLAST of Ec-28_000260.1 vs. uniprot
Match: A0A067CF23_SAPPC (50S ribosomal protein L33 n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CF23_SAPPC) HSP 1 Score: 78.2 bits (191), Expect = 7.150e-15 Identity = 40/57 (70.18%), Postives = 42/57 (73.68%), Query Frame = 1 Query: 1 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 171 MAK KA + IKLLS A TGFFYT KN R KLALRKYDPVVRQHV+F E KIK Sbjct: 1 MAKGKAKSVIIKLLSAANTGFFYTTRKNPRNMQKKLALRKYDPVVRQHVLFNEAKIK 57
BLAST of Ec-28_000260.1 vs. uniprot
Match: A0A8J5J0H2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A8J5J0H2_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 7.420e-15 Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 1 Query: 13 KAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 171 KA + IK+LS AGTGFFYT +KN R T KL+LRKYDP+VRQHV+F E KIK Sbjct: 19 KAKNVVIKMLSAAGTGFFYTTTKNPRNVTRKLSLRKYDPIVRQHVIFNEAKIK 71
BLAST of Ec-28_000260.1 vs. uniprot
Match: A0A6N2E0Y6_9PROT (50S ribosomal protein L33 n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6N2E0Y6_9PROT) HSP 1 Score: 77.4 bits (189), Expect = 1.300e-14 Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1 Query: 1 MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVFTETKIK 171 MAK K I I+L+S+AGTG+FY A KN R ATNKL RKYDPVVR+HV F E KIK Sbjct: 1 MAKAKQNTILIRLVSSAGTGYFYVAKKNPRTATNKLEFRKYDPVVRKHVAFKEAKIK 57 The following BLAST results are available for this feature:
BLAST of Ec-28_000260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-28_000260.1 ID=Ec-28_000260.1|Name=Ec-28_000260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=58bpback to top spliced messenger RNA >Ec-28_000260.1 ID=Ec-28_000260.1|Name=Ec-28_000260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1049bp|location=Sequence derived from alignment at chr_28:308304..311009+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. ATGGCGAAGAAGAAGGCTGGGCGTATCGCCATCAAACTGCTGAGCACGGCback to top protein sequence of Ec-28_000260.1 >Ec-28_000260.1 ID=Ec-28_000260.1|Name=Ec-28_000260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=58bp MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATNKLALRKYDPVVRQHVVback to top mRNA from alignment at chr_28:308304..311009+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-28_000260.1 ID=Ec-28_000260.1|Name=Ec-28_000260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2706bp|location=Sequence derived from alignment at chr_28:308304..311009+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at chr_28:308304..311009+ >Ec-28_000260.1 ID=Ec-28_000260.1|Name=Ec-28_000260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=174bp|location=Sequence derived from alignment at chr_28:308304..311009+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-28_000260.1' has the following synonyms
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