Ec-28_000250.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000250.1
Unique NameEc-28_000250.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length228
Homology
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BLAST of Ec-28_000250.1 vs. uniprot
Match: D7FIH1_ECTSI (Eukaryotic translation initiation factor 4E like2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH1_ECTSI)

HSP 1 Score: 473 bits (1216), Expect = 7.610e-169
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 1 
Query:    1 MAERKAGQSGDNASTEQQQPGLLPNGEHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNAKAYCFAVTKGQSQTQQG 681
            MAERKAGQSGDNASTEQQQPGLLPNGEHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNAKAYCFAVTKGQSQTQQG
Sbjct:    1 MAERKAGQSGDNASTEQQQPGLLPNGEHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNAKAYCFAVTKGQSQTQQG 227
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BLAST of Ec-28_000250.1 vs. uniprot
Match: A0A6V1NUK3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUK3_HETAK)

HSP 1 Score: 261 bits (667), Expect = 3.880e-85
Identity = 117/196 (59.69%), Postives = 153/196 (78.06%), Query Frame = 1 
Query:   64 LLPNGEHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNAKAYCFAV 651
            L+P GEHALQTGW FWYDKK+ K   D  +Y++ LH  G+F+T+EGFW+ YVHLKRP+ + +N N++LFR    +VPMWE +P GGCWIL++RK    +  SVL K+W DLVLAV+GE F EP+VVGIG+++R+REDLLSVWN DN+N  VRF IGE+LK +L LE +T+IEYK  + ++QDMS++RNAK Y FAV
Sbjct:   34 LIPEGEHALQTGWCFWYDKKLQKNA-DLNEYKSHLHNLGAFHTVEGFWRYYVHLKRPAALEVNTNLHLFRHGEQYVPMWEAFPKGGCWILKLRKTP--SGPSVLSKLWHDLVLAVIGEAFAEPDVVGIGLSVRAREDLLSVWNGDNTNNDVRFLIGEKLKTILGLEENTMIEYKTFKASLQDMSSYRNAKPYVFAV 226
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BLAST of Ec-28_000250.1 vs. uniprot
Match: A0A836CBD6_9STRA (Putative eukaryotic initiation factor 4E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBD6_9STRA)

HSP 1 Score: 260 bits (665), Expect = 6.610e-85
Identity = 119/195 (61.03%), Postives = 151/195 (77.44%), Query Frame = 1 
Query:   79 EHALQTGWSFWYDKKMPKK-TQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNS-NEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNAKAYCFAVTK 657
            +H LQT W FWYDKK  K  T D  +Y+A+LHK  +F+T+E FW+ Y H+KRPS +  N+N+Y FRD     P WE +PNGGCWIL+I+K++  + TSVLGKMWQDLV A +GE FEEP VVG+GMA+RS+EDLLSVWN DNS N+ VRF IGE+LK +LDLEPST+IEYKH  ++M+DMST+R+AK Y FA  +
Sbjct:   33 QHKLQTSWCFWYDKKHKKGGTGDYNEYKANLHKVHTFSTVEDFWRLYTHIKRPSALENNINMYFFRDAPNSSPSWESFPNGGCWILKIKKRA-HSGTSVLGKMWQDLVFAAIGECFEEPTVVGVGMAVRSKEDLLSVWNSDNSGNDAVRFAIGEKLKAILDLEPSTMIEYKHFASSMEDMSTYRHAKPYVFAAAQ 226
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BLAST of Ec-28_000250.1 vs. uniprot
Match: A0A024TXL0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TXL0_9STRA)

HSP 1 Score: 259 bits (662), Expect = 7.640e-85
Identity = 115/192 (59.90%), Postives = 154/192 (80.21%), Query Frame = 1 
Query:   79 EHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNAKAYCFAVT 654
            EH LQTGWS W+DKKMPK+T D + YQ++L K  +FNT+E FW++Y+H+KRPS ++ + N+YLFRD+    PMWE +PNGGCWIL+I+KK+     +VLGKMWQDL+ AV+GE FE  NVVGI MA+RS+ED++SVWN DNS++ +RF IGE+LK++L L+ +TLIEYK H  +++DMSTFRNAK Y FA +
Sbjct:   14 EHQLQTGWSLWFDKKMPKRT-DVSTYQSNLQKIANFNTVEDFWRHYIHVKRPSQLAKDTNLYLFRDQPNCAPMWEAFPNGGCWILKIKKKA-----NVLGKMWQDLLFAVIGEAFETLNVVGIAMALRSKEDMISVWNADNSDDNIRFAIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNAKPYVFAAS 199
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BLAST of Ec-28_000250.1 vs. uniprot
Match: A0A8K1CP93_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP93_PYTOL)

HSP 1 Score: 258 bits (660), Expect = 2.010e-84
Identity = 118/191 (61.78%), Postives = 150/191 (78.53%), Query Frame = 1 
Query:   79 EHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNAKAYCFAV 651
            EH LQTGW  WYDKK+PKK  D   YQ++L K  +F+T+E FW++Y+H+KRPS ++ +VN+YLFRD     PMWE +PNGGCWIL+I+KK+     +VLGKMWQDLV A VGE FEE +VVGI MAIRS+ED++SVWN DNSNE+ RF IGE+LK++L L+ +TLIEYK H  +++DMSTFRNAK Y FA 
Sbjct:   21 EHPLQTGWCIWYDKKLPKKI-DVGTYQSNLQKIAAFSTVEDFWRHYIHIKRPSQLNRDVNLYLFRDRPNCAPMWEAFPNGGCWILKIKKKA-----NVLGKMWQDLVFAAVGEAFEELDVVGIAMAIRSKEDMISVWNADNSNEETRFKIGEKLKEILMLDANTLIEYKFHANSIKDMSTFRNAKPYVFAA 205
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BLAST of Ec-28_000250.1 vs. uniprot
Match: F0W9A8_9STRA (Eukaryotic initiation factor 4E putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W9A8_9STRA)

HSP 1 Score: 258 bits (659), Expect = 2.670e-84
Identity = 115/192 (59.90%), Postives = 153/192 (79.69%), Query Frame = 1 
Query:   79 EHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNAKAYCFAVT 654
            EH L TGWSFWYDKK+P+   D   Y+++LH+  +F+T+E FW++YVHLKRPS +  ++N+Y+FRD     PMWE +P+GGCWIL+I+KK+     +VLGKMWQDLV A +GE+F + NVVGI MAIRS+ED+LSVWN DNS + VRF+IGE+LK++L L+P+TLIEYK H  +++DMSTFRNAK+Y FA T
Sbjct:   15 EHPLHTGWSFWYDKKLPRNV-DVGTYRSNLHRIATFSTVEDFWRHYVHLKRPSELHRDINLYMFRDLPKCAPMWEAFPHGGCWILKIKKKA-----NVLGKMWQDLVFAAIGELFGQANVVGIAMAIRSKEDMLSVWNADNSEDSVRFSIGEKLKEILMLDPNTLIEYKFHANSIRDMSTFRNAKSYVFATT 200
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BLAST of Ec-28_000250.1 vs. uniprot
Match: W2PGT1_PHYPN (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=W2PGT1_PHYPN)

HSP 1 Score: 258 bits (658), Expect = 4.950e-84
Identity = 119/201 (59.20%), Postives = 154/201 (76.62%), Query Frame = 1 
Query:   58 PGLLPNGE---HALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNAKAYCFAV 651
            P ++  GE   H LQTGWS WYDKKMPKK  D   YQ++L K  +FNT+E FW++Y+H+KRPS +S +VN+YLFRD+    PMWE +P GGCWIL+I+KK+     +VLGKMWQDLV A +GE FE+ +VVGI MAIRS+ED+LSVWN DNS++  RF IGE+LK++L L+ +TL+EYK H  +++DMSTFRNAK Y FA 
Sbjct:   15 PAIVEKGEEEEHPLQTGWSLWYDKKMPKKI-DVGTYQSNLQKIATFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQDLVFAAIGEAFEQLDVVGIAMAIRSKEDMLSVWNADNSDDNTRFAIGEKLKEILMLDSNTLVEYKFHANSIRDMSTFRNAKPYVFAA 209
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BLAST of Ec-28_000250.1 vs. uniprot
Match: K3WZ97_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WZ97_GLOUD)

HSP 1 Score: 254 bits (650), Expect = 5.440e-83
Identity = 115/192 (59.90%), Postives = 149/192 (77.60%), Query Frame = 1 
Query:   79 EHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNAKAYCFAVT 654
            EH L+TGW+ WYDKK+PKK  D   YQ++L K   FNT+E FW++Y+H+KRPS +S +VN+YLFRD+    PMWE +P GGCWIL+I+KK+     +VLGKMWQDLV A +GE+F   +VVGI MAIRS+ED+LSVWN DNS++  RF IGE+LK++L L+ +TLIEYK H  +++DMSTFRNAK Y FA T
Sbjct:   18 EHPLETGWALWYDKKLPKKI-DVGTYQSNLQKIAQFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQDLVFAAIGEVFASRDVVGIAMAIRSKEDMLSVWNADNSDDSTRFEIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNAKPYVFAAT 203
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BLAST of Ec-28_000250.1 vs. uniprot
Match: A0A067BS98_SAPPC (Uncharacterized protein n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BS98_SAPPC)

HSP 1 Score: 248 bits (634), Expect = 1.420e-80
Identity = 112/192 (58.33%), Postives = 148/192 (77.08%), Query Frame = 1 
Query:   79 EHALQTGWSFWYDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNAKAYCFAVT 654
            EH+LQTGW  WYD+K+PK+T D   YQ++L K  +F T+E FW++YVH+KRPS ++ + N+YLFRD     PMWE +PNGGCWIL+I+KK+     +VLGKMWQDL  A VGE FE  NVVGI MAIRS+ED++SVWN DN+++  RF IGE+LK++L L+ +TLIEYK H  +++DMSTFRNAK Y F+ +
Sbjct:   17 EHSLQTGWCLWYDRKLPKRT-DLDTYQSNLQKIAAFGTVEDFWRHYVHVKRPSQLNKDTNLYLFRDAPNCAPMWEAFPNGGCWILKIKKKA-----NVLGKMWQDLCFAAVGEAFETLNVVGIAMAIRSKEDMISVWNADNTDDSARFAIGEKLKELLMLDSNTLIEYKFHSNSIRDMSTFRNAKPYVFSAS 202
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BLAST of Ec-28_000250.1 vs. uniprot
Match: H3GYW7_PHYRM (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=H3GYW7_PHYRM)

HSP 1 Score: 249 bits (636), Expect = 1.850e-80
Identity = 120/216 (55.56%), Postives = 155/216 (71.76%), Query Frame = 1 
Query:   58 PGLLPNGE---HALQTGWSFWYDKKMPKKT------------QDQTQ---YQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNAKAYCFAV 651
            P ++  GE   H LQTGWS WYDKKMPKK             +D      YQ++L K  +FNT+E FW++Y+H+KRPS +S +VN+YLFRD+    PMWE +P GGCWIL+I+KK+     +VLGKMWQDLV A +GE FEE +VVGI MAIRS+ED+LSVWN DNS++  RF IGE+LK++L L+ +TL+EYK H  +++DMSTFRNAK Y FA 
Sbjct:   15 PAIVEKGEEEEHPLQTGWSLWYDKKMPKKIDVGEVGGEFAAHEDFVACRTYQSNLQKIANFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQDLVFAALGEAFEELDVVGIAMAIRSKEDMLSVWNADNSDDSTRFAIGEKLKEILMLDSNTLVEYKFHANSIRDMSTFRNAKPYVFAA 225
The following BLAST results are available for this feature:
BLAST of Ec-28_000250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIH1_ECTSI7.610e-169100.00Eukaryotic translation initiation factor 4E like2 ... [more]
A0A6V1NUK3_HETAK3.880e-8559.69Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CBD6_9STRA6.610e-8561.03Putative eukaryotic initiation factor 4E n=1 Tax=T... [more]
A0A024TXL0_9STRA7.640e-8559.90Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A8K1CP93_PYTOL2.010e-8461.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0W9A8_9STRA2.670e-8459.90Eukaryotic initiation factor 4E putative n=1 Tax=A... [more]
W2PGT1_PHYPN4.950e-8459.20Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]
K3WZ97_GLOUD5.440e-8359.90Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A067BS98_SAPPC1.420e-8058.33Uncharacterized protein n=5 Tax=Saprolegniaceae Ta... [more]
H3GYW7_PHYRM1.850e-8055.56Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:303430..307288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score475.7
Seed ortholog evalue1.2e-131
Seed eggNOG ortholog2880.D7FIH1
Length684
KEGG koko:K03259
KEGG Pathwayko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
Gene idEc-28_000250.1
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5053@1,KOG1669@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000250Ec-28_000250Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 303430..307288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000250.1Ec-28_000250.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 303430..307288 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000250.1.7Ec-28_000250.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 303430..303490 -
Ec-28_000250.1.6Ec-28_000250.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 304050..304159 -
Ec-28_000250.1.5Ec-28_000250.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 304519..304641 -
Ec-28_000250.1.4Ec-28_000250.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 305068..305154 -
Ec-28_000250.1.3Ec-28_000250.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 305881..306009 -
Ec-28_000250.1.2Ec-28_000250.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 306350..306413 -
Ec-28_000250.1.1Ec-28_000250.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 307179..307288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000250.1CDS:Ec-28_000250.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 303430..303490 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000250.1 ID=Ec-28_000250.1|Name=Ec-28_000250.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=228bp
MAERKAGQSGDNASTEQQQPGLLPNGEHALQTGWSFWYDKKMPKKTQDQT
QYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMW
ERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIG
MAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTA
MQDMSTFRNAKAYCFAVTKGQSQTQQG*
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spliced messenger RNA

>Ec-28_000250.1 ID=Ec-28_000250.1|Name=Ec-28_000250.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=684bp|location=Sequence derived from alignment at chr_28:303430..307288- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAACGGAAAGCAGGGCAGTCGGGGGATAACGCAAGTACAGAGCA
GCAGCAACCCGGCTTGTTGCCGAACGGGGAGCACGCGTTGCAGACAGGAT
GGTCTTTCTGGTACGACAAGAAGATGCCCAAGAAGACCCAGGACCAAACA
CAGTACCAAGCATCTCTTCACAAGGCGGGATCGTTCAATACCCTGGAGGG
GTTCTGGAAGAACTACGTGCACCTCAAGCGTCCGTCCAACATCAGCATCA
ACGTCAACGTGTACCTCTTCAGAGATGAGCGGGGGCACGTGCCCATGTGG
GAGCGCTACCCGAACGGAGGTTGCTGGATACTGAGGATCCGGAAAAAGTC
CGGCCAGACCAACACCAGCGTCCTGGGAAAGATGTGGCAGGACCTGGTGT
TGGCCGTGGTCGGAGAGATGTTCGAGGAGCCTAACGTGGTGGGCATCGGC
ATGGCCATCCGCTCGAGGGAGGACTTGCTGTCGGTGTGGAACGAGGACAA
CAGCAACGAGAAGGTGAGGTTCAACATCGGCGAGCGCCTAAAGCAGGTCC
TGGACCTGGAGCCGTCGACTCTCATCGAGTACAAGCACCACCAGACCGCT
ATGCAGGACATGTCCACTTTCAGGAACGCCAAGGCCTACTGCTTCGCCGT
GACCAAGGGGCAATCACAGACCCAGCAAGGGTAA
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protein sequence of Ec-28_000250.1

>Ec-28_000250.1 ID=Ec-28_000250.1|Name=Ec-28_000250.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=228bp
MAERKAGQSGDNASTEQQQPGLLPNGEHALQTGWSFWYDKKMPKKTQDQT
QYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMW
ERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIG
MAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTA
MQDMSTFRNAKAYCFAVTKGQSQTQQG*
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mRNA from alignment at chr_28:303430..307288-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000250.1 ID=Ec-28_000250.1|Name=Ec-28_000250.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3859bp|location=Sequence derived from alignment at chr_28:303430..307288- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGGAACGGAAAGCAGGGCAGTCGGGGGATAACGCAAGTACAGAGCA
GCAGCAACCCGGCTTGTTGCCGAACGGGGAGCACGCGTTGCAGACAGGAT
GGTCTTTCTGGTGAGGTTTTCCAAATCACAGTACGCTGGATGGATACAAA
GGCAGGAATGTTTGAGTCGGCGTTTAGAGCCAGTCCTATGTAGAAGTCGT
CATTTTGGGCCATGCGGTCTTCCGTTGCCCTCTATTTTCAAGGATTTCGC
CTCCCCGGCTAGCCCCTCGCCACCGATGCTGGCGTTTCTCGTGCAAGAAA
ACGGGGTGATACTGCTGTACCATAATGGGCTCCGCATTGCACTGCTTGTT
GGCTTGCGATACAGGAATGAGCTTCTTGAGCTTCTCTTGTTGGGCGTTGG
TTACTACAGGGTCACTGACCCGCGGAAGGCCTGTGCCGCCAAATGTGCAC
CCACACCACAGTAGTAGCTGTGGGGCGTGCTCTACAGGAATGAGTTTCTT
GAGCTTCTTTTGTTGGGCGTTGGTTACTACGGGGTGACTGACCCGCGGAA
GACCTGTGCCGCCAAATGTACACCCACACCACAATAGTAGCTGTGGGGCG
TGCTCTACAGGAATGAGCTTCTTGAGCTTCTTTTGTTGGGCGTTGGTTAC
TACAGGGTGACTGACCCGCGGAGGATCTGTGCCGCCAAATGTACACCCAC
ACCACAGTAGTAGCTGTGGGGCGTGCTCTACAGGAGGGGCTGAAGAGGAG
ACGCGACAGACGTTATCTGCACCATTTGCTTTGTGGTCAATGCCCAGTTG
TGAAGTTCTGATGCTTCGAAGTACTGCAGTTACATGGGTTTTTATTTATG
CGGGCGAAATCTCAATTTCCCGCAGGTACGACAAGAAGATGCCCAAGAAG
ACCCAGGACCAAACACAGTACCAAGCATCTCTTCACAAGGTTGGTCGCCG
CTTGTACCGAAGAAACTGCGACATATTGGTATATTAGGACGGACGTGTCC
CGAAAGAAAACCAACTCTAGTTTGTGGCATCACGGTCGACACGCCCGTTT
CATGAGAAAGGAATCAAGAGGGATATTTTTGAAGAGAATCTTGTGACACC
CTTTTGTTTATCGTGCGGTACTACCCCATGGTCAATAGTTAGTGACATAC
GGTCAATACGCGGGTTACATCGGAAAGGATCAAGCGGCGTTTTTTTTGTT
TTAGGATCATGTGAAATCCTGTTGTGTTTCACGCGGTACGTACTGCACGT
GGTGAATCAATGAATGATTTCCTCGCTAGGCGGGATCGTTCAATACCCTG
GAGGGGTTCTGGAAGAACTACGTGCACCTCAAGCGTCCGTCCAACATCAG
CATCAACGTCAACGTGTACCTCTTCAGAGATGAGCGGGGGCACGTGCCCA
TGTGGGAGGTAAGCGGGCCAAAGTAAAGCAAGGGTTGCTGTTGTTGCCCA
TGTTCGGCAGCGTTGCGTGGCGAACTTGGTGCTTACTAAGTTCGGTTACG
AGCCAGCAGCAGACGCAGCTCGAAATCGGCCCCAAGCGTAAAGCGCGAAG
GCGTGGTGCGCACGCTGCCCGGCAGAAAGAAGCCAACGCGTGGTAGGTAC
AGTTAGCTTTTGGTGGACGAAAGCCTACAGTATCACGCACCGGGTACGGC
TTGTCAGTTGTGAGCCTAGCCTTTTGGTGGTGTTTCCGGCGGTGTTTGAT
CATATGGCCACAAACTAAAATTTAGGTCACGGTGAAGCATGACGGGAGCG
GTATCGCCGTAAAGTACGTGGAGCACGTTCCCCTTTCAATCGACGCCTTT
GTTCGAATCATTGCTGCATCTGATTAGCTACCTGCATCCCAAAACTGGAT
ACCCGATGGGAAAGTTGTGGGCGTGTGGGTGCTTTCGATAAGCCTACAGC
AGCAACGTGCCTTGCCATACGCTTGGCGCCCAGCAGCACTCGCACACCAG
CCTATGGCACCACTGTGCGCTTCTTGCCCTGTGCCTCTTCTCGATTCGAC
GTCTCTCGTGCTTGGCTAGTAGAGACAGCGCCGCCCCCGCAAGATGTACC
GGCGTATTCCGGCGATCCTTTTCCCTGCTTGACGTTGTGCTGATACCCGT
CGCACGTTGACTCGTCCGTCCAAAAAAACACCAGCGCTACCCGAACGGAG
GTTGCTGGATACTGAGGATCCGGAAAAAGTCCGGCCAGACCAACACCAGC
GTCCTGGGAAAGATGTGGCAGGTGAGAACGAACGAACGAACGAACGAACC
ACACGGGGCGCGGCCGCTCTGGGCGGGGTAGCACAACCTCTGAGGGGGGG
GGGGGGGGGCACGGCTACCCGGTGCGAGGCTGTTCGCGTGTCGCTTGGTC
GGAGAGCGGTGTGCATCGGACAAAAAATACACAATCGGGTTCTTTATGGG
CCTCGTTTGTTTTTGTGGTGCTACGTATGTGAGGGTGAAAACGTTAACGT
TTGGTCGGTGGATATGAGACCATGGGTGCTCCACGTGTGCCGGTGGACTA
TTTGGTCGGTTGGTTCGGATACACACGCGCGCGAAGGTCTATGCATGGAT
CACACTACCAACGCTGCCGCCTTGAATCTCATGGTGCTCATGCCGTTCCG
TGCTCGCTGGTGGTCGTTGTCCTTGTTTTCCCCCCACCGGCGGCCAGGAC
CTGGTGTTGGCCGTGGTCGGAGAGATGTTCGAGGAGCCTAACGTGGTGGG
CATCGGCATGGCCATCCGCTCGAGGGAGGACTTGCTGTCGGTGTGGAACG
AGGACAACAGCAACGAGAAGGTGTGTGTTAACACCCTAGACGCGACAGGA
GAAGCAAGCAATGGGACTCGACGGGTGCATGCCGACGAGGGTCCCCTGCG
TTTCGCTTGCCTCCCTCCTACTTGCGTAGATGTATCGTGATGATGCGGCA
GGCACCCCCGATCCCGATCCCTACTATTTCGTCCCTTACGCCACAAAGTT
GGTAGTTCCGTTGTCATTCCGGCCCGTTTGGACGCTGATCGTGTCTTGTT
TCGGCTGTCGCTGATGATTTTTGTCCTTTGCTGATGTCTCCTCTCGTTGC
GGCTGCCGTTGCTGGTTGATTTCCCTTCGTTGGCGTCTCCCGTTTCGTTG
GCAATACCGCTCGTTGGCCGCGTCATCAGGTGAGGTTCAACATCGGCGAG
CGCCTAAAGCAGGTCCTGGACCTGGAGCCGTCGACTCTCATCGAGTACAA
GCACCACCAGACCGCTATGCAGGACATGTCCACTTTCAGGTGCGTCTATC
TCTCTCTCTCTCTAGCTTGCTCTACGTGCGGTTAATTTGTCTTGGTTGCA
GTGAACTCGGCGAACTATGCGTCCCAAAAAAAGTCGTGTACATACACGAC
ACGAGCGCGGCAATGATGACTTTTCGAAACGCGATTTGAGTACTCTTCGT
TTGTTGGACTTGGGCCGATCGACGGCGGCCGGTCGAGCCAGCAGTCGCCG
GTCAACCAAGCGCTCTTCTTGAAAACACCAGCGGGAGCACAGCCATCTAA
AGCACGCGACGATAGCTAGCAGTGAAACACGGCCTATGCCCTCGAAACGA
GGGCTCACATCAGGGGCCAGAAGGGTTACCCGGTGGTCGCCATGCCGACG
CCAGGCCTCAATTCACATCGCGGAGTGAAAGCGGGCAGACAAACACGAAT
GTGTTCCTTCCCCCGTTTTTTGTTTTTTTCCATTCGTTCCGGGTGGTGAA
GCAAGTATAGCATGATTGTCTGCCCGCGGCCACCACCACCCATCCGCCCC
TTTCCCCGCTCTTCTGGAAACCTCGCTGCTCTGTCGCGTTTTGAGCAGGA
ACGCCAAGGCCTACTGCTTCGCCGTGACCAAGGGGCAATCACAGACCCAG
CAAGGGTAA
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Coding sequence (CDS) from alignment at chr_28:303430..307288-

>Ec-28_000250.1 ID=Ec-28_000250.1|Name=Ec-28_000250.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=684bp|location=Sequence derived from alignment at chr_28:303430..307288- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGGAACGGAAAGCAGGGCAGTCGGGGGATAACGCAAGTACAGAGCA
GCAGCAACCCGGCTTGTTGCCGAACGGGGAGCACGCGTTGCAGACAGGAT
GGTCTTTCTGGTACGACAAGAAGATGCCCAAGAAGACCCAGGACCAAACA
CAGTACCAAGCATCTCTTCACAAGGCGGGATCGTTCAATACCCTGGAGGG
GTTCTGGAAGAACTACGTGCACCTCAAGCGTCCGTCCAACATCAGCATCA
ACGTCAACGTGTACCTCTTCAGAGATGAGCGGGGGCACGTGCCCATGTGG
GAGCGCTACCCGAACGGAGGTTGCTGGATACTGAGGATCCGGAAAAAGTC
CGGCCAGACCAACACCAGCGTCCTGGGAAAGATGTGGCAGGACCTGGTGT
TGGCCGTGGTCGGAGAGATGTTCGAGGAGCCTAACGTGGTGGGCATCGGC
ATGGCCATCCGCTCGAGGGAGGACTTGCTGTCGGTGTGGAACGAGGACAA
CAGCAACGAGAAGGTGAGGTTCAACATCGGCGAGCGCCTAAAGCAGGTCC
TGGACCTGGAGCCGTCGACTCTCATCGAGTACAAGCACCACCAGACCGCT
ATGCAGGACATGTCCACTTTCAGGAACGCCAAGGCCTACTGCTTCGCCGT
GACCAAGGGGCAATCACAGACCCAGCAAGGGTAA
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Synonyms
The feature 'Ec-28_000250.1' has the following synonyms
Synonym
Esi0120_0052
Esi_0120_0052
EIF4E-like2