Ec-28_000040.4 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000040.4
Unique NameEc-28_000040.4
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length149
Homology
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BLAST of Ec-28_000040.4 vs. uniprot
Match: D7FIF0_ECTSI (Peroxin-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIF0_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 2.570e-50
Identity = 103/159 (64.78%), Postives = 105/159 (66.04%), Query Frame = 1 
Query:   67 VEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRE------------CGASTRRPGCSTARGASAIPTRWPPREQWRS*ALGPRSCGRIPGCRLERAHARVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVY 507
            VEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRE            C  S   P      GA  +   W          LG  +    P          VSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVY
Sbjct:   19 VEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWD---------LG--AADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVY 166
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BLAST of Ec-28_000040.4 vs. uniprot
Match: A0A6H5KU09_9PHAE (Peroxin-7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU09_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 3.470e-46
Identity = 100/170 (58.82%), Postives = 107/170 (62.94%), Query Frame = 1 
Query:   49 SL*LPC--VEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRE------------CGASTRRPGCSTARGASAIPTRWPPREQWRS*ALGPRSCGRIPGCRLE--RAHAR-VSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVY 507
            SL   C  VEFSPFDGER+AVATAQYFGIVGNGRLH+FGRH GDV +SSPAW+QRE            C  S   P      GA      W                G + G  +   R H + VSGVDWNLVSK LFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVY
Sbjct:    8 SLPFSCHAVEFSPFDGERLAVATAQYFGIVGNGRLHIFGRHGGDVTNSSPAWEQRELRSFDTQAGLFDCAWSECHPHQMATAGADGQVKLW--------------DLGAVDGFPVADWREHTQEVSGVDWNLVSKDLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVY 163
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BLAST of Ec-28_000040.4 vs. uniprot
Match: A0A813H6Y9_POLGL (Peroxin-7 n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813H6Y9_POLGL)

HSP 1 Score: 85.1 bits (209), Expect = 2.160e-15
Identity = 60/152 (39.47%), Postives = 73/152 (48.03%), Query Frame = 1 
Query:   70 EFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRECGASTRRPGCSTARGASAIPTRWPPREQWRS*ALGPRSCGRI----------PGCRLERAHARVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDHGR 495
            EFSPF G  VAV TAQY+GIVGNGRLHVF     DV  S+P            RP C            W   E      L  +  G +          P   LE   A V GVDWN+ +K L +SASWD ++K+W    GV+  TFR+H +
Sbjct:   14 EFSPFHGNLVAVGTAQYYGIVGNGRLHVF-----DV--SAPGGP---------RPVCDWLTKDGVYDVAWS--EANEHVLLTGQGDGTLKLFDWSRPQGPIMSLEGHQAEVYGVDWNMNTKNLVSSASWDHTIKVWDIQQGVNISTFRNHNQ 147
[Close]
BLAST of Ec-28_000040.4 vs. uniprot
Match: A0A2K8DQU7_PROMN (Peroxin-7 (Fragment) n=1 Tax=Prorocentrum minimum TaxID=39449 RepID=A0A2K8DQU7_PROMN)

HSP 1 Score: 83.2 bits (204), Expect = 1.910e-13
Identity = 60/152 (39.47%), Postives = 72/152 (47.37%), Query Frame = 1 
Query:   70 EFSPFDGERVAVATAQYFGIVGNGRLHVFGRHA--GDVADS----------SPAWQQRECGASTRRPGCSTARGASAIPTRWPPREQWRS*ALGPRSCGRIPGCRLERAHARVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDH 489
            EFSPF G  +AV TAQYFGIVGNGRLHV+  H   G+V               AW +            +TA+G   +         W       R  G I    LE   A V GVDWNL SK L +SA+WD +VK+W    GV  +TF  H
Sbjct:   54 EFSPFQGNLLAVGTAQYFGIVGNGRLHVYDIHGPGGNVVPVCEWITKDGVYDTAWSE------ANEHVLATAQGDGTVKL-----FDWT------RPHGPIMS--LEEHTAEVYGVDWNLNSKNLVSSAAWDRTVKVWDVMQGVCINTFMSH 186
[Close]
BLAST of Ec-28_000040.4 vs. uniprot
Match: A0A812V9I2_SYMPI (Peroxin-7 n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812V9I2_SYMPI)

HSP 1 Score: 79.7 bits (195), Expect = 1.990e-12
Identity = 58/150 (38.67%), Postives = 69/150 (46.00%), Query Frame = 1 
Query:   70 EFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRECGASTRRPGCSTARGASAIPTRWPPREQWRS*ALGPRSCGRI----------PGCRLERAHARVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDH 489
            EFSPF G  +AV T QYFGIVGNG+LHV      D+A  +P  Q          P C      +     W   E      L  ++ G +          P   LE   A V GVDWNL  K L +SA+WD SVK+W    GV   TFR H
Sbjct:   14 EFSPFRGNLLAVGTGQYFGIVGNGKLHVL-----DIA--APGGQ----------PVCEWMTNQAVYDVAWS--EANEHVLLTGQADGTLKLFDWTNPHGPIMSLEEHTAEVYGVDWNLNEKHLISSAAWDHSVKVWDAMRGVCLSTFRAH 144
[Close]
BLAST of Ec-28_000040.4 vs. uniprot
Match: A0A812H6A0_9DINO (Peroxin-7 n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812H6A0_9DINO)

HSP 1 Score: 79.3 bits (194), Expect = 2.300e-12
Identity = 57/150 (38.00%), Postives = 69/150 (46.00%), Query Frame = 1 
Query:   70 EFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRECGASTRRPGCSTARGASAIPTRWPPREQWRS*ALGPRSCGRI----------PGCRLERAHARVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDH 489
            EFSPF G  +A+ T QYFGIVGNG+LHV      D+A  +P  Q          P C      +     W   E      L  ++ G +          P   LE   A V GVDWNL  K L +SA+WD SVK+W    GV   TFR H
Sbjct:   14 EFSPFRGNLLAIGTGQYFGIVGNGKLHVL-----DIA--APGGQ----------PVCEWMTNQAVYDVAWS--EANEHVLLTGQADGTLKLFDWTNPQGPIMSLEEHTAEVYGVDWNLNEKHLISSAAWDHSVKVWDAMRGVCLSTFRAH 144
[Close]
BLAST of Ec-28_000040.4 vs. uniprot
Match: A0A1Q9DFN9_SYMMI (Peroxin-7 n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DFN9_SYMMI)

HSP 1 Score: 81.3 bits (199), Expect = 3.290e-12
Identity = 58/150 (38.67%), Postives = 70/150 (46.67%), Query Frame = 1 
Query:   70 EFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRECGASTRRPGCSTARGASAIPTRWPPREQWRS*ALGPRSCGRI----------PGCRLERAHARVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDH 489
            EFSPF G  +A+ T QYFGIVGNG+LHV      D+A  +P  Q          P C      +     W   E      L  ++ G +          P   LE   A V GVDWNL  K L +SA+WD SVK+W    GVS  TFR H
Sbjct:   18 EFSPFRGNLLAIGTGQYFGIVGNGKLHVL-----DIA--APGGQ----------PVCEWMTNQAVYDVAWS--EANEHVLLTGQADGTLKLFDWTNPQGPIMSLEEHTAEVYGVDWNLNEKHLISSAAWDHSVKVWDAMRGVSVSTFRAH 148
[Close]
BLAST of Ec-28_000040.4 vs. uniprot
Match: A0A225V9Y1_9STRA (Peroxin-7 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V9Y1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.070e-11
Identity = 58/152 (38.16%), Postives = 73/152 (48.03%), Query Frame = 1 
Query:   67 VEFSPFDGERVAVATAQYFGIVGNGRLHVF-----GRHAGDVADSSP------AWQQRECGASTRRPGCSTARGASAIPTRWPPREQWRS*ALGPRSCGRIPGCRLERAHARVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDH 489
            VEFSPF    +AV TAQYFGIVGNGR HV+     G  A   A  +P      AW +       ++   S A G+  +         W       ++  + P          VSGV+WNLVSK  FASASWDG+VK+W P    S  T  +H
Sbjct:   17 VEFSPFVDNLIAVGTAQYFGIVGNGRQHVYEMLPAGGLAPIRAFDTPQGVYDCAWSENH----GQQLVSSCADGSVKL---------WHL-----QTRDQFPIQNYHEHKQEVSGVNWNLVSKDSFASASWDGTVKIWKPEVPHSILTLAEH 150
[Close]
BLAST of Ec-28_000040.4 vs. uniprot
Match: A0A0P1A7Q7_PLAHL (Peroxin-7 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A7Q7_PLAHL)

HSP 1 Score: 77.4 bits (189), Expect = 2.550e-11
Identity = 56/142 (39.44%), Postives = 70/142 (49.30%), Query Frame = 1 
Query:   67 VEFSPFDGERVAVATAQYFGIVGNGRLHVF-----GRHAGDVADSSP------AWQQRECGASTRRPGCSTARGASAIPTRWPPREQWRS*ALGPRSCGRIPGCRLERAHARVSGVDWNLVSKGLFASASWDGSVKLWTPSA 459
            VEFSPF    VAV TAQYFGIVGNGR HV+     G  A   A  +P      AW +       ++   S A G+  +         W       ++  + P          VSGV+WNL+SK  FASASWDG+VK+W P A
Sbjct:   17 VEFSPFVDNLVAVGTAQYFGIVGNGRQHVYEMLPSGGFAPIRAFDTPQGVYDCAWSENN----GQQLVSSCADGSIKL---------WHL-----QTRDQFPIRNFHEHVKEVSGVNWNLISKDSFASASWDGTVKIWKPEA 140
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BLAST of Ec-28_000040.4 vs. uniprot
Match: A0A662WRL8_9STRA (Peroxin-7 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WRL8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.070e-11
Identity = 55/140 (39.29%), Postives = 69/140 (49.29%), Query Frame = 1 
Query:   67 VEFSPFDGERVAVATAQYFGIVGNGRLHVF-----GRHAGDVADSSP------AWQQRECGASTRRPGCSTARGASAIPTRWPPREQWRS*ALGPRSCGRIPGCRLERAHARVSGVDWNLVSKGLFASASWDGSVKLWTP 453
            VEFSPF    VAV TAQYFGIVGNGR HV+     G  A   A  +P      AW +       ++   S A G+  +         W       ++  + P          VSGV+WNLV+K  FASASWDG+VK+W P
Sbjct:   48 VEFSPFMDNLVAVGTAQYFGIVGNGRQHVYEMLPAGGLAPVRAFDTPEGVYDCAWSENH----GQQLVSSCANGSLKL---------WHL-----QTRDQFPIQNYHEHKQEVSGVNWNLVAKDSFASASWDGTVKIWKP 169
The following BLAST results are available for this feature:
BLAST of Ec-28_000040.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIF0_ECTSI2.570e-5064.78Peroxin-7 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KU09_9PHAE3.470e-4658.82Peroxin-7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxI... [more]
A0A813H6Y9_POLGL2.160e-1539.47Peroxin-7 n=2 Tax=Polarella glacialis TaxID=89957 ... [more]
A0A2K8DQU7_PROMN1.910e-1339.47Peroxin-7 (Fragment) n=1 Tax=Prorocentrum minimum ... [more]
A0A812V9I2_SYMPI1.990e-1238.67Peroxin-7 n=2 Tax=Symbiodinium TaxID=2949 RepID=A0... [more]
A0A812H6A0_9DINO2.300e-1238.00Peroxin-7 n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=... [more]
A0A1Q9DFN9_SYMMI3.290e-1238.67Peroxin-7 n=4 Tax=Symbiodinium TaxID=2949 RepID=A0... [more]
A0A225V9Y1_9STRA1.070e-1138.16Peroxin-7 n=1 Tax=Phytophthora megakarya TaxID=479... [more]
A0A0P1A7Q7_PLAHL2.550e-1139.44Peroxin-7 n=1 Tax=Plasmopara halstedii TaxID=4781 ... [more]
A0A662WRL8_9STRA3.070e-1139.29Peroxin-7 n=2 Tax=Nothophytophthora sp. Chile5 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:16667..21429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1870
Hectar predicted targeting categoryother localisation
Gene idEc-28_000040.4
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000040Ec-28_000040Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 16667..25769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000040.4Ec-28_000040.4Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 20673..21119 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000040.4.1Ec-28_000040.4.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 16667..16734 +
Ec-28_000040.4.2Ec-28_000040.4.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 17480..17623 +
Ec-28_000040.4.3Ec-28_000040.4.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 18053..18137 +
Ec-28_000040.4.4Ec-28_000040.4.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 18922..18996 +
Ec-28_000040.4.5Ec-28_000040.4.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 19515..19655 +
Ec-28_000040.4.6Ec-28_000040.4.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 19777..19877 +
Ec-28_000040.4.7Ec-28_000040.4.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 20174..21429 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0000405UTR:Ec-28_000040.4Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 16667..16734 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000040.4CDS:Ec-28_000040.4Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 20673..21119 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0000403UTR:Ec-28_000040.4Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 21120..21429 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000040.4 ID=Ec-28_000040.4|Name=Ec-28_000040.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=149bp
MCVSARACFAPARSTSGRRPRLQVLLSCRGAGGGGGSWVLHEYAPRCLLF
SSVSGLSWPGEMPGEILPFFTQGYILASFRANQPVVVSFVFFEPFLRHDA
LSCPRLTSSSSMLPRLNVSAFARVVLWSCCVHPPSAVGRFVWSLVGAR*
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spliced messenger RNA

>Ec-28_000040.4 ID=Ec-28_000040.4|Name=Ec-28_000040.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1870bp|location=Sequence derived from alignment at chr_28:16667..21429+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CTCTCTCTCGGCGGGCGAACATCATGAGGCTTGAAGCGTCGATTAACCTT
CCCTTTAGCTGCCATGCGGTGGAGTTCAGCCCGTTTGACGGCGAGCGGGT
GGCGGTGGCGACAGCCCAGTACTTCGGCATCGTTGGGAACGGGCGGTTGC
ACGTCTTCGGCAGACATGCGGGAGACGTTGCGGACAGCTCGCCCGCCTGG
CAGCAGCGAGAGCTGCGGAGCTTCGACACGCAGGCCGGGCTGTTCGACTG
CGCGTGGAGCGAGTGCCATCCCCACCAGATGGCCACCGCGGGAGCAGATG
GCGTAGTTAAGCTTTGGGACCTAGGAGCTGCGGACGGATTCCCGGTTGCC
GACTGGAGAGAGCACACGCAAGAGGTGTCGGGCGTGGACTGGAATCTGGT
TTCGAAGGGCTTGTTCGCGTCAGCTTCTTGGGACGGCAGCGTGAAACTGT
GGACACCAAGTGCGGGAGTATCGTCGCATACTTTTCGGGATCACGGGCGG
CACCCCGTTTACGGTGCTATTTGGAGCCCGTTTAGCCCTGGCCAGCTGCT
CTCTTTCTCCGGGGATGGGACTGCGAGGGTGCTCGATGTCAACAGCCCCG
GTGCTGCGATTGTGCTGGACGGACACGGGGGTGCGGAGGTCCTAGCGGGA
GACTGGGACAAGTACAACCATCCAGTGGTCGCCACGGGTTGCGCCGACGG
GGCGGTGAAGACGTGGGACCTCCGTCAACCGAGGTATGTGTGTCCATCTT
ATCTGTTATGTTGTTAGCACCGACCGCGCCAACCTGTTGACCAACCAACG
AAAAGACGCAAGTCTCAGTGCGGTTGAGAACAAAAAATGCTTCTAAAGGC
CACGATCTGGTACCCGGTGAGGGGGTGCGTGTGCGTGCGTGCGTGCGTGC
GTGTGTGTGTTTACTAGCATAGCGTCGACCGTGCCAACCGCGCTGATCAA
CGAAATTACGCCGGTGCCAAGCGGGTGAAATGAAAGTCCCTGGAAGGCGA
CGAAAAATTCAGGTGTGTGTGTGGTTTTTTATTATTAGCATCGACCGCGC
TAACCCGCTGACCAATGAAAAGACGCCAGTCTCAGTGCGGTTGAAAACAC
AACAAACTTCTAAATGTGTGTGAGTGCGCGCGCGTGTTTTGCGCCCGCGA
GGAGCACCAGCGGGCGCAGGCCACGGCTGCAAGTACTCCTCTCCTGTCGC
GGTGCTGGCGGCGGCGGTGGGAGCTGGGTTCTACATGAATACGCACCTCG
CTGCTTGTTGTTTAGTTCCGTATCAGGTTTGAGTTGGCCCGGCGAAATGC
CCGGCGAAATTCTCCCCTTCTTTACACAAGGCTACATTCTCGCGTCCTTT
CGCGCCAACCAACCCGTGGTGGTTTCGTTCGTGTTCTTTGAACCGTTCTT
GCGACACGATGCCTTGTCGTGCCCTCGACTAACGAGTTCTTCGTCCATGC
TGCCGCGACTCAATGTTTCGGCTTTCGCCCGTGTGGTGCTTTGGTCCTGC
TGCGTGCATCCTCCGTCTGCAGTAGGGCGATTCGTTTGGTCTCTTGTTGG
TGCACGGTAATGACAACGCTTCCACAGCTCTGCTGTACCCGCACGTCGCC
GCAAAGTGTGCTGCCGGCGCCCACAAAGGCCGATGCCCTTAGTGAAATGG
GTCTGGTGTGCCAAAAACCGCCCGTTCAAACGTCAAAGCCCTTCTTGGGG
CTTGTCACAAACAGCGCGAACCGTATTGAACAGGTGCGTGCGCTTGTGCC
AGCATCCGAATCGACACACGTTTCTCCGTAACACTTGAAGTGAAGCATGT
GCATATGTGAACTTTGAGATCCACATGCTGCAAGATTATGGGACGCTTGA
CTGATCTCGTCCCCCCCCCC
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protein sequence of Ec-28_000040.4

>Ec-28_000040.4 ID=Ec-28_000040.4|Name=Ec-28_000040.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=149bp
MCVSARACFAPARSTSGRRPRLQVLLSCRGAGGGGGSWVLHEYAPRCLLF
SSVSGLSWPGEMPGEILPFFTQGYILASFRANQPVVVSFVFFEPFLRHDA
LSCPRLTSSSSMLPRLNVSAFARVVLWSCCVHPPSAVGRFVWSLVGAR*
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mRNA from alignment at chr_28:16667..21429+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000040.4 ID=Ec-28_000040.4|Name=Ec-28_000040.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4763bp|location=Sequence derived from alignment at chr_28:16667..21429+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CTCTCTCTCGGCGGGCGAACATCATGAGGCTTGAAGCGTCGATTAACCTT
CCCTTTAGCTGCCATGCGGTGAGATCTTTTAGGCTCGTTGGCAAGAACGA
TTGTGTTCTGCCCCGCCTTTAGCGTGTCTCCTCGCATTCACGCGCATGAT
TTCAAAGACCCGACAGCAGGTTGCGTCTCCCCGTGCTTTATCATGCAGCA
GCTGTAGACCTCCCCCGCTGAAGATATTCGACACATCGGGTGCCGCACTC
AAGGCGGGCACCACTTCCCTGCAAGAGGATCATCTTTACTCTCGGTATGA
ATACATGTGTCCCACCTGCACCTTCGCCGGCCATATGGTTCCCAGTACCG
AACTCTGCCCTATTCCGCATGATGATCTGATCCAGCTCGTTCGCGTTCAT
GACAGCAACCCGTAGCCTTTCACACGGAAGCTGGTCCGTAACTGCTATCC
ATGCAAGCAGGATATTATACACCGCCCAGGGGTGGCACCGCCATGTGGTA
TCACCACCTGTACCCACACTCGGCACAGCTGGAGGAGGAGCCTTGAAACC
GTTCATGGGCCGGGTGATACGCCCTGTCGCTCGCGGAACTCTGTTTCCCC
TAGGTTGCTGTTTCGCATTCTGTTTTTTAAAAAAACAAGTACAATTATTA
CTGATGGGTATTATTCAGATCACCACGCGCAACCCGTCGTCACGACTCAG
CGATCACTGATCATGTATGTGTCCCTTTCGTTCGAACGAACCTGTGCGCC
TTCGAATTTCGACCAAGTGTTACTAATACTTTTTTGCGAACGACTCCGAC
CACCACCACCAAGGTGGAGTTCAGCCCGTTTGACGGCGAGCGGGTGGCGG
TGGCGACAGCCCAGTACTTCGGCATCGTTGGGAACGGGCGGTTGCACGTC
TTCGGCAGACATGCGGGAGACGTTGCGGACAGCTCGCCCGCCTGGCAGCA
GCGAGAGGTGTGACTCGACACGTTGTCGGGGACGGACGGCGTTTCCTTAG
TGTAGCCTTCGCGAGCAAATAACAAGCTTGGTTTTAGTGGCGGGGCTGTA
CGTACGTGTTTGGGAGTTACGGTAACGGGTATCTCTTTATTAATTCACAT
ACATGCCACGCTTACTTGTCGTCGCGACGGCGGTCGACGTGTTCGGTCCA
CTCCGAGGGCGCCGAGAAGTCGACGGAGGGGGGCAACAGCAGCGGCATTT
GGCTGGTTTCATCAAGGCGGGGAAGCAGGGGTTGCGGCGCGGGGGCTGCG
CACGTCCACGACTAAAAAAATCGACAACACCACGTGTTTGGAAATCTTGT
CAGACGACGACAAGGCGCGCCCTTTTTTCTTCCCCGTCAGGGCTACATAA
CAAGACTGCTGCTACGCTCGTTGTCTTGCGCAGTAGCTGCGGAGCTTCGA
CACGCAGGCCGGGCTGTTCGACTGCGCGTGGAGCGAGTGCCATCCCCACC
AGATGGCCACCGCGGGAGCAGGTTTGTGCGACTGACAGCATTTTTTAAGC
TGTAGTGGGGGTACGGCGGCGTGATGATCCGTTGTTGCCATCTCCTTCAA
GCACGCACGGTTGCCTCCTCCCTTGTCATCGCCAACTGGTTCTTCAATGA
GTTCATGTCAATATTCGGTTTTTAAAACACTGCATCAGCACACCACCAGC
AAACCTCACACGCCAAACGAAGTTGGCATGGCAAAGCGTTGCTTCGGCTT
TTCGCCGTCGTGGATGTCTTGAGCCTGAGGATTGCCCCCGCCGTTCCCAG
GCCGGACTGCAACGTACTCCTGCAGCGTTCTTCTTTCTGGTTCCAGGACA
GATATGGAAACTCCAGCGCAGGCATCCTGTATTACCTTCTTTGAGTTGAG
CTCTGGGTAAAAGCGGTCCACCTGCCGCACCGCAATGAATCGTTCTTGCA
GGGTACCCACTACGGCTGCGGCCCACACAGAAGAAACGTCTGCTTGGGGT
TGCTCAATTTCTTATTCGTCACCACCGTCGAGCATAGATGGGGGTCATTT
GATAGAGTTTCCGTGTAGGATCCACGGCCGAGGTGTGCTGCTTAGTCGAT
TTGTCTTAGTTTTTTCGTGAAAAGTTTAGCCTCATTTTCTTCTGACTCAA
TTTTTCTTAATGGCGGGCCTGAACCGTACAAGAGCGCGCACTAGTTGTGT
GAGCACTGGGCTGAATAACCCCCGTGTTGAGCAGGCATCGTGGTCGAAAT
GACGTCACTGCTGTTTTTTTGTTTTGTTCGCTGCTCTAACCTGCTCCTAT
AATAGATGGCGTAGTTAAGCTTTGGGACCTAGGAGCTGCGGACGGATTCC
CGGTTGCCGACTGGAGAGAGCACACGCAAGGTATACATCGCACTTGAGAA
ATAAAAGGACAGGGCCAACCAGAAAACCTGCGGGAACTTTTCTCTTTCTC
TCGTTAAGGTTTGCCGAACAAAAACTGCTGTACGTATGTATTCCGTAGTA
AAGGTGTGCTTCAGGAAACCCGACCAATGTTTCGGCGGGACCGCGGGGGG
TTCCCATTTTCCGGTTGCTTGAAGAGAAAGAGTCGAGTTGGAAAACCTCA
GCGCCCGTCAGGGGAGACGTGCGGCATCTGTCGACCCTCTGGATAATTGT
AGCCCACCACCTCCCTCTGGCGCTCACCCGCCACATTTTCCCCCCGTGTG
GATCATGCAGCGTTATTATCTACCACGAAGTACAACCTTTCCAAAAGCAC
ACGATATTAGCTTATACACCTAACACGGCTTGACCCCAATAGCACACGAT
TTTTTGTTGAGACGCCCAACACTATTTGGCCCTGAAAGTACACGATTTCC
TATTTAGACGCCCAACACGGTTTGACCCCGCTTGGTCCTCCCTGTCAGAG
GTGTCGGGCGTGGACTGGAATCTGGTTTCGAAGGGCTTGTTCGCGTCAGC
TTCTTGGGACGGCAGCGTGAAACTGTGGACACCAAGTGCGGGAGTATCGT
CGCATACTTTTCGGGATCACGGGCGGCACCCCGTTTACGGTGAGGCAGAC
TACCATGCTTTCCTTGACAACAGCAGTGTGGCTGGAACGGAGCGGTCGAT
GCTAATAGAAAAGACACAACACACACACACACACACGCAACACACGTCGC
GCGCTCGCAGGTGCTATTTGGAGCCCGTTTAGCCCTGGCCAGCTGCTCTC
TTTCTCCGGGGATGGGACTGCGAGGGTGCTCGATGTCAACAGCCCCGGTG
CTGCGATTGTGGTAAGAAGAAGCACTTTTCTCGCTTCGGCGGTTGTATGC
GGCAGGTCACACCTTCACATGAAGAGGAAGTCGCCTAGAGTGAGCTAAGC
TAAGCTAAGCTAGGCAGGGTCGAGCCCACCTAGTCGACGTCTTTTGACCA
GAGGCCTAAACACGACAGTTGTCAAGGCACTCAGTCCTGTAAGCAGGCCT
TGACACGTCGAGCCCGCTAGACGGCGCGCCAGCTCAGAAAAGGTCGCGGC
ACACTGAAGATGGTAATGCGTCTGTTTTACGGTGATGAAATATCGGTGAT
TCAAAAGCTGGACGGACACGGGGGTGCGGAGGTCCTAGCGGGAGACTGGG
ACAAGTACAACCATCCAGTGGTCGCCACGGGTTGCGCCGACGGGGCGGTG
AAGACGTGGGACCTCCGTCAACCGAGGTATGTGTGTCCATCTTATCTGTT
ATGTTGTTAGCACCGACCGCGCCAACCTGTTGACCAACCAACGAAAAGAC
GCAAGTCTCAGTGCGGTTGAGAACAAAAAATGCTTCTAAAGGCCACGATC
TGGTACCCGGTGAGGGGGTGCGTGTGCGTGCGTGCGTGCGTGCGTGTGTG
TGTTTACTAGCATAGCGTCGACCGTGCCAACCGCGCTGATCAACGAAATT
ACGCCGGTGCCAAGCGGGTGAAATGAAAGTCCCTGGAAGGCGACGAAAAA
TTCAGGTGTGTGTGTGGTTTTTTATTATTAGCATCGACCGCGCTAACCCG
CTGACCAATGAAAAGACGCCAGTCTCAGTGCGGTTGAAAACACAACAAAC
TTCTAAATGTGTGTGAGTGCGCGCGCGTGTTTTGCGCCCGCGAGGAGCAC
CAGCGGGCGCAGGCCACGGCTGCAAGTACTCCTCTCCTGTCGCGGTGCTG
GCGGCGGCGGTGGGAGCTGGGTTCTACATGAATACGCACCTCGCTGCTTG
TTGTTTAGTTCCGTATCAGGTTTGAGTTGGCCCGGCGAAATGCCCGGCGA
AATTCTCCCCTTCTTTACACAAGGCTACATTCTCGCGTCCTTTCGCGCCA
ACCAACCCGTGGTGGTTTCGTTCGTGTTCTTTGAACCGTTCTTGCGACAC
GATGCCTTGTCGTGCCCTCGACTAACGAGTTCTTCGTCCATGCTGCCGCG
ACTCAATGTTTCGGCTTTCGCCCGTGTGGTGCTTTGGTCCTGCTGCGTGC
ATCCTCCGTCTGCAGTAGGGCGATTCGTTTGGTCTCTTGTTGGTGCACGG
TAATGACAACGCTTCCACAGCTCTGCTGTACCCGCACGTCGCCGCAAAGT
GTGCTGCCGGCGCCCACAAAGGCCGATGCCCTTAGTGAAATGGGTCTGGT
GTGCCAAAAACCGCCCGTTCAAACGTCAAAGCCCTTCTTGGGGCTTGTCA
CAAACAGCGCGAACCGTATTGAACAGGTGCGTGCGCTTGTGCCAGCATCC
GAATCGACACACGTTTCTCCGTAACACTTGAAGTGAAGCATGTGCATATG
TGAACTTTGAGATCCACATGCTGCAAGATTATGGGACGCTTGACTGATCT
CGTCCCCCCCCCC
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Coding sequence (CDS) from alignment at chr_28:16667..21429+

>Ec-28_000040.4 ID=Ec-28_000040.4|Name=Ec-28_000040.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=447bp|location=Sequence derived from alignment at chr_28:16667..21429+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGTGTGAGTGCGCGCGCGTGTTTTGCGCCCGCGAGGAGCACCAGCGG
GCGCAGGCCACGGCTGCAAGTACTCCTCTCCTGTCGCGGTGCTGGCGGCG
GCGGTGGGAGCTGGGTTCTACATGAATACGCACCTCGCTGCTTGTTGTTT
AGTTCCGTATCAGGTTTGAGTTGGCCCGGCGAAATGCCCGGCGAAATTCT
CCCCTTCTTTACACAAGGCTACATTCTCGCGTCCTTTCGCGCCAACCAAC
CCGTGGTGGTTTCGTTCGTGTTCTTTGAACCGTTCTTGCGACACGATGCC
TTGTCGTGCCCTCGACTAACGAGTTCTTCGTCCATGCTGCCGCGACTCAA
TGTTTCGGCTTTCGCCCGTGTGGTGCTTTGGTCCTGCTGCGTGCATCCTC
CGTCTGCAGTAGGGCGATTCGTTTGGTCTCTTGTTGGTGCACGGTAA
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Synonyms
The feature 'Ec-28_000040.4' has the following synonyms
Synonym
Esi0120_0004
Esi_0120_0004