Ec-28_000040.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-28_000040.2
Unique Name	Ec-28_000040.2
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	163

Homology

[Close]

BLAST of Ec-28_000040.2 vs. uniprot
Match: D7FIF0_ECTSI (Peroxin-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIF0_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 1.020e-63
Identity = 108/119 (90.76%), Postives = 110/119 (92.44%), Query Frame = 2

Query:  914 GRRCGQLARLAAA---RELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVYG 1261
            GR  G +A  + A   RELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVYG
Sbjct:   49 GRHAGDVADSSPAWQQRELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVYG 167

[Close]

BLAST of Ec-28_000040.2 vs. uniprot
Match: A0A6H5KU09_9PHAE (Peroxin-7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU09_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 1.270e-61
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 2

Query:  953 RELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVYGA 1264
            RELRSFDTQAGLFDCAWSECHPHQMATAGADG VKLWDLGA DGFPVADWREHTQEVSGVDWNLVSK LFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVYGA
Sbjct:   62 RELRSFDTQAGLFDCAWSECHPHQMATAGADGQVKLWDLGAVDGFPVADWREHTQEVSGVDWNLVSKDLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVYGA 165

[Close]

BLAST of Ec-28_000040.2 vs. uniprot
Match: M4BI52_HYAAE (Peroxin-7 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BI52_HYAAE)

HSP 1 Score: 118 bits (296), Expect = 8.330e-26
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 2

Query:  959 LRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHT 1228
            +R+FDT  G++DCAWSE H  Q+ ++ ADG VKLW L   D FP+ ++REH QEVSGV+WNL++K  FASASWDGSVK+W P    S  T
Sbjct:   17 IRAFDTPQGVYDCAWSENHGQQLVSSCADGSVKLWHLQTRDEFPIQNYREHKQEVSGVNWNLIAKDSFASASWDGSVKVWRPEVPHSVRT 106

[Close]

BLAST of Ec-28_000040.2 vs. uniprot
Match: W2R913_PHYPN (Peroxin-7 n=14 Tax=Phytophthora TaxID=4783 RepID=W2R913_PHYPN)

HSP 1 Score: 117 bits (292), Expect = 6.420e-25
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 2

Query:  959 LRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTP 1204
            +R+FDT  G++DCAWSE H  Q+ ++ ADG VKLW L   D FP+ ++ EH QEVSGV+WNLVSK  FASASWDG+VK+W P
Sbjct:   57 IRAFDTPQGIYDCAWSENHGQQLVSSCADGSVKLWHLQTRDQFPIQNYHEHKQEVSGVNWNLVSKDSFASASWDGTVKIWKP 138

[Close]

BLAST of Ec-28_000040.2 vs. uniprot
Match: A0A225V9Y1_9STRA (Peroxin-7 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V9Y1_9STRA)

HSP 1 Score: 119 bits (299), Expect = 7.730e-25
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 2

Query:  959 LRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDH 1240
            +R+FDT  G++DCAWSE H  Q+ ++ ADG VKLW L   D FP+ ++ EH QEVSGV+WNLVSK  FASASWDG+VK+W P    S  T  +H
Sbjct:   57 IRAFDTPQGVYDCAWSENHGQQLVSSCADGSVKLWHLQTRDQFPIQNYHEHKQEVSGVNWNLVSKDSFASASWDGTVKIWKPEVPHSILTLAEH 150

[Close]

BLAST of Ec-28_000040.2 vs. uniprot
Match: A0A0W8D2Q1_PHYNI (Peroxin-7 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D2Q1_PHYNI)

HSP 1 Score: 116 bits (291), Expect = 1.080e-24
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 2

Query:  959 LRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTP 1204
            +R+FDT  G++DCAWSE H  Q+ ++ ADG VKLW L   D FP+ ++ EH QEVSGV+WNLVSK  FASASWDG+VK+W P
Sbjct:   17 IRAFDTPQGVYDCAWSENHGQQLVSSCADGSVKLWHLQTRDQFPIQNYHEHKQEVSGVNWNLVSKDSFASASWDGTVKIWKP 98

[Close]

BLAST of Ec-28_000040.2 vs. uniprot
Match: H3HBK4_PHYRM (Peroxin-7 n=2 Tax=Phytophthora TaxID=4783 RepID=H3HBK4_PHYRM)

HSP 1 Score: 117 bits (292), Expect = 6.220e-24
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 2

Query:  959 LRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTP 1204
            +R+FDT  G++DCAWSE H  Q+ ++ ADG VKLW L   D FP+  + EH QEVSGV+WNLVSK  FASASWDGSVK+W P
Sbjct:   57 VRAFDTPQGVYDCAWSENHGQQLVSSCADGSVKLWHLQTRDQFPIQSYHEHKQEVSGVNWNLVSKDSFASASWDGSVKIWKP 138

[Close]

BLAST of Ec-28_000040.2 vs. uniprot
Match: A0A8K1CUU6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUU6_PYTOL)

HSP 1 Score: 114 bits (284), Expect = 6.660e-24
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 2

Query:  959 LRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVS 1219
            +R+FDT  G++DCAWSE +  Q+ +A A+G +KLWDL   D FP+ ++ EH QEVSGV+W+LV+K  F SASWDGS+KLW P    S
Sbjct:   57 IRAFDTPEGVYDCAWSETNGQQLVSACANGSLKLWDLQTRDNFPIQNYHEHKQEVSGVNWSLVAKDAFVSASWDGSIKLWRPELPTS 143

[Close]

BLAST of Ec-28_000040.2 vs. uniprot
Match: D0NPH8_PHYIT (Peroxin-7 n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NPH8_PHYIT)

HSP 1 Score: 117 bits (293), Expect = 7.010e-24
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 2

Query:  959 LRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTP 1204
            +R FDT  G++DCAWSE H  Q+ ++ ADG VKLW L   D FP+ ++ EH QEVSGV+WNLVSK  FASASWDG+VK+WTP
Sbjct:   57 IRVFDTPQGVYDCAWSENHGQQLVSSCADGSVKLWHLQTRDEFPIQNYHEHKQEVSGVNWNLVSKDSFASASWDGTVKVWTP 138

[Close]

BLAST of Ec-28_000040.2 vs. uniprot
Match: A0A397BAA8_9STRA (Peroxin-7 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BAA8_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.330e-23
Identity = 48/92 (52.17%), Postives = 64/92 (69.57%), Query Frame = 2

Query:  959 LRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFR 1234
            +RSFDTQ G++D AWSE HP+Q+  A A+G +KL+D+  +D FP+  + EHT EVSGV+W LV +  F SASWD ++KLW P    S  T R
Sbjct:    1 MRSFDTQDGVYDVAWSETHPNQLVAACANGHLKLFDVTTSDNFPIQSFAEHTNEVSGVNWGLVDRTSFVSASWDHTIKLWHPQHPASMQTLR 92

The following BLAST results are available for this feature:

BLAST of Ec-28_000040.2 vs. uniprot

BLAST of Ec-28_000040.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FIF0_ECTSI	1.020e-63	90.76	Peroxin-7 n=1 Tax=Ectocarpus siliculosus TaxID=288...	[more]
A0A6H5KU09_9PHAE	1.270e-61	97.12	Peroxin-7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxI...	[more]
M4BI52_HYAAE	8.330e-26	57.78	Peroxin-7 n=1 Tax=Hyaloperonospora arabidopsidis (...	[more]
W2R913_PHYPN	6.420e-25	60.98	Peroxin-7 n=14 Tax=Phytophthora TaxID=4783 RepID=W...	[more]
A0A225V9Y1_9STRA	7.730e-25	56.38	Peroxin-7 n=1 Tax=Phytophthora megakarya TaxID=479...	[more]
A0A0W8D2Q1_PHYNI	1.080e-24	60.98	Peroxin-7 n=1 Tax=Phytophthora nicotianae TaxID=47...	[more]
H3HBK4_PHYRM	6.220e-24	62.20	Peroxin-7 n=2 Tax=Phytophthora TaxID=4783 RepID=H3...	[more]
A0A8K1CUU6_PYTOL	6.660e-24	55.17	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
D0NPH8_PHYIT	7.010e-24	62.20	Peroxin-7 n=1 Tax=Phytophthora infestans (strain T...	[more]
A0A397BAA8_9STRA	1.330e-23	52.17	Peroxin-7 n=1 Tax=Aphanomyces astaci TaxID=112090 ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_28	contig	chr_28:16667..21429 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	171.4
Seed ortholog evalue	3.5e-40
Seed eggNOG ortholog	2880.D7FIF0
Preferred name	PEX7
Length	2618
KEGG ko	ko:K13341
KEGG TC	3.A.20.1
KEGG Pathway	ko04146,map04146
Hectar predicted targeting category	other localisation
Gene id	Ec-28_000040.2
GOs	GO:0000151,GO:0000268,GO:0001501,GO:0001503,GO:0001764,GO:0001958,GO:0003674,GO:0005048,GO:0005053,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005782,GO:0005829,GO:0006082,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006662,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007031,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0008610,GO:0008611,GO:0009056,GO:0009058,GO:0009062,GO:0009653,GO:0009887,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016042,GO:0016043,GO:0016054,GO:0016477,GO:0016558,GO:0016560,GO:0017038,GO:0018904,GO:0019395,GO:0019752,GO:0019899,GO:0022008,GO:0030154,GO:0030258,GO:0031090,GO:0031461,GO:0031903,GO:0031907,GO:0031974,GO:0032501,GO:0032502,GO:0032787,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034440,GO:0034613,GO:0036075,GO:0040011,GO:0042277,GO:0042579,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046395,GO:0046485,GO:0046504,GO:0046907,GO:0046983,GO:0048513,GO:0048699,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051674,GO:0055085,GO:0055114,GO:0060348,GO:0060349,GO:0060350,GO:0065002,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0080008,GO:0097384,GO:0098588,GO:0098805,GO:1901503,GO:1901575,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.	peroxisome matrix targeting signal-2 binding
EggNOG OGs	KOG0277@1,KOG0277@2759
COG Functional cat.	E
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-28_000040	Ec-28_000040	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_28 16667..25769 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_000040.2	Ec-28_000040.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_28 18119..20326 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_000040.2.1	Ec-28_000040.2.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 16667..17623 +
Ec-28_000040.2.2	Ec-28_000040.2.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 18050..18137 +
Ec-28_000040.2.3	Ec-28_000040.2.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 18922..18996 +
Ec-28_000040.2.4	Ec-28_000040.2.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 19515..19655 +
Ec-28_000040.2.5	Ec-28_000040.2.5	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 19777..19877 +
Ec-28_000040.2.6	Ec-28_000040.2.6	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 20174..21429 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_000040	5UTR:Ec-28_000040.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_28 16667..17623 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_000040.2	CDS:Ec-28_000040.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_28 18119..18137 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_000040	3UTR:Ec-28_000040.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_28 20327..21429 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_28:16667..21429+
coding sequence from alignment at chr_28:16667..21429+

mRNA sequence

>Ec-28_000040.2 ID=Ec-28_000040.2|Name=Ec-28_000040.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=163bp
MATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASAS
WDGSVKLWTPSAGVSSHTFRDHGRHPVYGAIWSPFSPGQLLSFSGDGTAR
VLDVNSPGAAIVLDGHGGAEVLAGDWDKYNHPVVATGCADGAVKTWDLRQ
PRYVCPSYLLCC*

spliced messenger RNA

>Ec-28_000040.2 ID=Ec-28_000040.2|Name=Ec-28_000040.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2618bp|location=Sequence derived from alignment at chr_28:16667..21429+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CTCTCTCTCGGCGGGCGAACATCATGAGGCTTGAAGCGTCGATTAACCTT
CCCTTTAGCTGCCATGCGGTGAGATCTTTTAGGCTCGTTGGCAAGAACGA
TTGTGTTCTGCCCCGCCTTTAGCGTGTCTCCTCGCATTCACGCGCATGAT
TTCAAAGACCCGACAGCAGGTTGCGTCTCCCCGTGCTTTATCATGCAGCA
GCTGTAGACCTCCCCCGCTGAAGATATTCGACACATCGGGTGCCGCACTC
AAGGCGGGCACCACTTCCCTGCAAGAGGATCATCTTTACTCTCGGTATGA
ATACATGTGTCCCACCTGCACCTTCGCCGGCCATATGGTTCCCAGTACCG
AACTCTGCCCTATTCCGCATGATGATCTGATCCAGCTCGTTCGCGTTCAT
GACAGCAACCCGTAGCCTTTCACACGGAAGCTGGTCCGTAACTGCTATCC
ATGCAAGCAGGATATTATACACCGCCCAGGGGTGGCACCGCCATGTGGTA
TCACCACCTGTACCCACACTCGGCACAGCTGGAGGAGGAGCCTTGAAACC
GTTCATGGGCCGGGTGATACGCCCTGTCGCTCGCGGAACTCTGTTTCCCC
TAGGTTGCTGTTTCGCATTCTGTTTTTTAAAAAAACAAGTACAATTATTA
CTGATGGGTATTATTCAGATCACCACGCGCAACCCGTCGTCACGACTCAG
CGATCACTGATCATGTATGTGTCCCTTTCGTTCGAACGAACCTGTGCGCC
TTCGAATTTCGACCAAGTGTTACTAATACTTTTTTGCGAACGACTCCGAC
CACCACCACCAAGGTGGAGTTCAGCCCGTTTGACGGCGAGCGGGTGGCGG
TGGCGACAGCCCAGTACTTCGGCATCGTTGGGAACGGGCGGTTGCACGTC
TTCGGCAGACATGCGGGAGACGTTGCGGACAGCTCGCCCGCCTGGCAGCA
GCGAGAGTAGCTGCGGAGCTTCGACACGCAGGCCGGGCTGTTCGACTGCG
CGTGGAGCGAGTGCCATCCCCACCAGATGGCCACCGCGGGAGCAGATGGC
GTAGTTAAGCTTTGGGACCTAGGAGCTGCGGACGGATTCCCGGTTGCCGA
CTGGAGAGAGCACACGCAAGAGGTGTCGGGCGTGGACTGGAATCTGGTTT
CGAAGGGCTTGTTCGCGTCAGCTTCTTGGGACGGCAGCGTGAAACTGTGG
ACACCAAGTGCGGGAGTATCGTCGCATACTTTTCGGGATCACGGGCGGCA
CCCCGTTTACGGTGCTATTTGGAGCCCGTTTAGCCCTGGCCAGCTGCTCT
CTTTCTCCGGGGATGGGACTGCGAGGGTGCTCGATGTCAACAGCCCCGGT
GCTGCGATTGTGCTGGACGGACACGGGGGTGCGGAGGTCCTAGCGGGAGA
CTGGGACAAGTACAACCATCCAGTGGTCGCCACGGGTTGCGCCGACGGGG
CGGTGAAGACGTGGGACCTCCGTCAACCGAGGTATGTGTGTCCATCTTAT
CTGTTATGTTGTTAGCACCGACCGCGCCAACCTGTTGACCAACCAACGAA
AAGACGCAAGTCTCAGTGCGGTTGAGAACAAAAAATGCTTCTAAAGGCCA
CGATCTGGTACCCGGTGAGGGGGTGCGTGTGCGTGCGTGCGTGCGTGCGT
GTGTGTGTTTACTAGCATAGCGTCGACCGTGCCAACCGCGCTGATCAACG
AAATTACGCCGGTGCCAAGCGGGTGAAATGAAAGTCCCTGGAAGGCGACG
AAAAATTCAGGTGTGTGTGTGGTTTTTTATTATTAGCATCGACCGCGCTA
ACCCGCTGACCAATGAAAAGACGCCAGTCTCAGTGCGGTTGAAAACACAA
CAAACTTCTAAATGTGTGTGAGTGCGCGCGCGTGTTTTGCGCCCGCGAGG
AGCACCAGCGGGCGCAGGCCACGGCTGCAAGTACTCCTCTCCTGTCGCGG
TGCTGGCGGCGGCGGTGGGAGCTGGGTTCTACATGAATACGCACCTCGCT
GCTTGTTGTTTAGTTCCGTATCAGGTTTGAGTTGGCCCGGCGAAATGCCC
GGCGAAATTCTCCCCTTCTTTACACAAGGCTACATTCTCGCGTCCTTTCG
CGCCAACCAACCCGTGGTGGTTTCGTTCGTGTTCTTTGAACCGTTCTTGC
GACACGATGCCTTGTCGTGCCCTCGACTAACGAGTTCTTCGTCCATGCTG
CCGCGACTCAATGTTTCGGCTTTCGCCCGTGTGGTGCTTTGGTCCTGCTG
CGTGCATCCTCCGTCTGCAGTAGGGCGATTCGTTTGGTCTCTTGTTGGTG
CACGGTAATGACAACGCTTCCACAGCTCTGCTGTACCCGCACGTCGCCGC
AAAGTGTGCTGCCGGCGCCCACAAAGGCCGATGCCCTTAGTGAAATGGGT
CTGGTGTGCCAAAAACCGCCCGTTCAAACGTCAAAGCCCTTCTTGGGGCT
TGTCACAAACAGCGCGAACCGTATTGAACAGGTGCGTGCGCTTGTGCCAG
CATCCGAATCGACACACGTTTCTCCGTAACACTTGAAGTGAAGCATGTGC
ATATGTGAACTTTGAGATCCACATGCTGCAAGATTATGGGACGCTTGACT
GATCTCGTCCCCCCCCCC

protein sequence of Ec-28_000040.2

>Ec-28_000040.2 ID=Ec-28_000040.2|Name=Ec-28_000040.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=163bp
MATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASAS
WDGSVKLWTPSAGVSSHTFRDHGRHPVYGAIWSPFSPGQLLSFSGDGTAR
VLDVNSPGAAIVLDGHGGAEVLAGDWDKYNHPVVATGCADGAVKTWDLRQ
PRYVCPSYLLCC*

mRNA from alignment at chr_28:16667..21429+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-28_000040.2 ID=Ec-28_000040.2|Name=Ec-28_000040.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4763bp|location=Sequence derived from alignment at chr_28:16667..21429+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CTCTCTCTCGGCGGGCGAACATCATGAGGCTTGAAGCGTCGATTAACCTT
CCCTTTAGCTGCCATGCGGTGAGATCTTTTAGGCTCGTTGGCAAGAACGA
TTGTGTTCTGCCCCGCCTTTAGCGTGTCTCCTCGCATTCACGCGCATGAT
TTCAAAGACCCGACAGCAGGTTGCGTCTCCCCGTGCTTTATCATGCAGCA
GCTGTAGACCTCCCCCGCTGAAGATATTCGACACATCGGGTGCCGCACTC
AAGGCGGGCACCACTTCCCTGCAAGAGGATCATCTTTACTCTCGGTATGA
ATACATGTGTCCCACCTGCACCTTCGCCGGCCATATGGTTCCCAGTACCG
AACTCTGCCCTATTCCGCATGATGATCTGATCCAGCTCGTTCGCGTTCAT
GACAGCAACCCGTAGCCTTTCACACGGAAGCTGGTCCGTAACTGCTATCC
ATGCAAGCAGGATATTATACACCGCCCAGGGGTGGCACCGCCATGTGGTA
TCACCACCTGTACCCACACTCGGCACAGCTGGAGGAGGAGCCTTGAAACC
GTTCATGGGCCGGGTGATACGCCCTGTCGCTCGCGGAACTCTGTTTCCCC
TAGGTTGCTGTTTCGCATTCTGTTTTTTAAAAAAACAAGTACAATTATTA
CTGATGGGTATTATTCAGATCACCACGCGCAACCCGTCGTCACGACTCAG
CGATCACTGATCATGTATGTGTCCCTTTCGTTCGAACGAACCTGTGCGCC
TTCGAATTTCGACCAAGTGTTACTAATACTTTTTTGCGAACGACTCCGAC
CACCACCACCAAGGTGGAGTTCAGCCCGTTTGACGGCGAGCGGGTGGCGG
TGGCGACAGCCCAGTACTTCGGCATCGTTGGGAACGGGCGGTTGCACGTC
TTCGGCAGACATGCGGGAGACGTTGCGGACAGCTCGCCCGCCTGGCAGCA
GCGAGAGGTGTGACTCGACACGTTGTCGGGGACGGACGGCGTTTCCTTAG
TGTAGCCTTCGCGAGCAAATAACAAGCTTGGTTTTAGTGGCGGGGCTGTA
CGTACGTGTTTGGGAGTTACGGTAACGGGTATCTCTTTATTAATTCACAT
ACATGCCACGCTTACTTGTCGTCGCGACGGCGGTCGACGTGTTCGGTCCA
CTCCGAGGGCGCCGAGAAGTCGACGGAGGGGGGCAACAGCAGCGGCATTT
GGCTGGTTTCATCAAGGCGGGGAAGCAGGGGTTGCGGCGCGGGGGCTGCG
CACGTCCACGACTAAAAAAATCGACAACACCACGTGTTTGGAAATCTTGT
CAGACGACGACAAGGCGCGCCCTTTTTTCTTCCCCGTCAGGGCTACATAA
CAAGACTGCTGCTACGCTCGTTGTCTTGCGCAGTAGCTGCGGAGCTTCGA
CACGCAGGCCGGGCTGTTCGACTGCGCGTGGAGCGAGTGCCATCCCCACC
AGATGGCCACCGCGGGAGCAGGTTTGTGCGACTGACAGCATTTTTTAAGC
TGTAGTGGGGGTACGGCGGCGTGATGATCCGTTGTTGCCATCTCCTTCAA
GCACGCACGGTTGCCTCCTCCCTTGTCATCGCCAACTGGTTCTTCAATGA
GTTCATGTCAATATTCGGTTTTTAAAACACTGCATCAGCACACCACCAGC
AAACCTCACACGCCAAACGAAGTTGGCATGGCAAAGCGTTGCTTCGGCTT
TTCGCCGTCGTGGATGTCTTGAGCCTGAGGATTGCCCCCGCCGTTCCCAG
GCCGGACTGCAACGTACTCCTGCAGCGTTCTTCTTTCTGGTTCCAGGACA
GATATGGAAACTCCAGCGCAGGCATCCTGTATTACCTTCTTTGAGTTGAG
CTCTGGGTAAAAGCGGTCCACCTGCCGCACCGCAATGAATCGTTCTTGCA
GGGTACCCACTACGGCTGCGGCCCACACAGAAGAAACGTCTGCTTGGGGT
TGCTCAATTTCTTATTCGTCACCACCGTCGAGCATAGATGGGGGTCATTT
GATAGAGTTTCCGTGTAGGATCCACGGCCGAGGTGTGCTGCTTAGTCGAT
TTGTCTTAGTTTTTTCGTGAAAAGTTTAGCCTCATTTTCTTCTGACTCAA
TTTTTCTTAATGGCGGGCCTGAACCGTACAAGAGCGCGCACTAGTTGTGT
GAGCACTGGGCTGAATAACCCCCGTGTTGAGCAGGCATCGTGGTCGAAAT
GACGTCACTGCTGTTTTTTTGTTTTGTTCGCTGCTCTAACCTGCTCCTAT
AATAGATGGCGTAGTTAAGCTTTGGGACCTAGGAGCTGCGGACGGATTCC
CGGTTGCCGACTGGAGAGAGCACACGCAAGGTATACATCGCACTTGAGAA
ATAAAAGGACAGGGCCAACCAGAAAACCTGCGGGAACTTTTCTCTTTCTC
TCGTTAAGGTTTGCCGAACAAAAACTGCTGTACGTATGTATTCCGTAGTA
AAGGTGTGCTTCAGGAAACCCGACCAATGTTTCGGCGGGACCGCGGGGGG
TTCCCATTTTCCGGTTGCTTGAAGAGAAAGAGTCGAGTTGGAAAACCTCA
GCGCCCGTCAGGGGAGACGTGCGGCATCTGTCGACCCTCTGGATAATTGT
AGCCCACCACCTCCCTCTGGCGCTCACCCGCCACATTTTCCCCCCGTGTG
GATCATGCAGCGTTATTATCTACCACGAAGTACAACCTTTCCAAAAGCAC
ACGATATTAGCTTATACACCTAACACGGCTTGACCCCAATAGCACACGAT
TTTTTGTTGAGACGCCCAACACTATTTGGCCCTGAAAGTACACGATTTCC
TATTTAGACGCCCAACACGGTTTGACCCCGCTTGGTCCTCCCTGTCAGAG
GTGTCGGGCGTGGACTGGAATCTGGTTTCGAAGGGCTTGTTCGCGTCAGC
TTCTTGGGACGGCAGCGTGAAACTGTGGACACCAAGTGCGGGAGTATCGT
CGCATACTTTTCGGGATCACGGGCGGCACCCCGTTTACGGTGAGGCAGAC
TACCATGCTTTCCTTGACAACAGCAGTGTGGCTGGAACGGAGCGGTCGAT
GCTAATAGAAAAGACACAACACACACACACACACACGCAACACACGTCGC
GCGCTCGCAGGTGCTATTTGGAGCCCGTTTAGCCCTGGCCAGCTGCTCTC
TTTCTCCGGGGATGGGACTGCGAGGGTGCTCGATGTCAACAGCCCCGGTG
CTGCGATTGTGGTAAGAAGAAGCACTTTTCTCGCTTCGGCGGTTGTATGC
GGCAGGTCACACCTTCACATGAAGAGGAAGTCGCCTAGAGTGAGCTAAGC
TAAGCTAAGCTAGGCAGGGTCGAGCCCACCTAGTCGACGTCTTTTGACCA
GAGGCCTAAACACGACAGTTGTCAAGGCACTCAGTCCTGTAAGCAGGCCT
TGACACGTCGAGCCCGCTAGACGGCGCGCCAGCTCAGAAAAGGTCGCGGC
ACACTGAAGATGGTAATGCGTCTGTTTTACGGTGATGAAATATCGGTGAT
TCAAAAGCTGGACGGACACGGGGGTGCGGAGGTCCTAGCGGGAGACTGGG
ACAAGTACAACCATCCAGTGGTCGCCACGGGTTGCGCCGACGGGGCGGTG
AAGACGTGGGACCTCCGTCAACCGAGGTATGTGTGTCCATCTTATCTGTT
ATGTTGTTAGCACCGACCGCGCCAACCTGTTGACCAACCAACGAAAAGAC
GCAAGTCTCAGTGCGGTTGAGAACAAAAAATGCTTCTAAAGGCCACGATC
TGGTACCCGGTGAGGGGGTGCGTGTGCGTGCGTGCGTGCGTGCGTGTGTG
TGTTTACTAGCATAGCGTCGACCGTGCCAACCGCGCTGATCAACGAAATT
ACGCCGGTGCCAAGCGGGTGAAATGAAAGTCCCTGGAAGGCGACGAAAAA
TTCAGGTGTGTGTGTGGTTTTTTATTATTAGCATCGACCGCGCTAACCCG
CTGACCAATGAAAAGACGCCAGTCTCAGTGCGGTTGAAAACACAACAAAC
TTCTAAATGTGTGTGAGTGCGCGCGCGTGTTTTGCGCCCGCGAGGAGCAC
CAGCGGGCGCAGGCCACGGCTGCAAGTACTCCTCTCCTGTCGCGGTGCTG
GCGGCGGCGGTGGGAGCTGGGTTCTACATGAATACGCACCTCGCTGCTTG
TTGTTTAGTTCCGTATCAGGTTTGAGTTGGCCCGGCGAAATGCCCGGCGA
AATTCTCCCCTTCTTTACACAAGGCTACATTCTCGCGTCCTTTCGCGCCA
ACCAACCCGTGGTGGTTTCGTTCGTGTTCTTTGAACCGTTCTTGCGACAC
GATGCCTTGTCGTGCCCTCGACTAACGAGTTCTTCGTCCATGCTGCCGCG
ACTCAATGTTTCGGCTTTCGCCCGTGTGGTGCTTTGGTCCTGCTGCGTGC
ATCCTCCGTCTGCAGTAGGGCGATTCGTTTGGTCTCTTGTTGGTGCACGG
TAATGACAACGCTTCCACAGCTCTGCTGTACCCGCACGTCGCCGCAAAGT
GTGCTGCCGGCGCCCACAAAGGCCGATGCCCTTAGTGAAATGGGTCTGGT
GTGCCAAAAACCGCCCGTTCAAACGTCAAAGCCCTTCTTGGGGCTTGTCA
CAAACAGCGCGAACCGTATTGAACAGGTGCGTGCGCTTGTGCCAGCATCC
GAATCGACACACGTTTCTCCGTAACACTTGAAGTGAAGCATGTGCATATG
TGAACTTTGAGATCCACATGCTGCAAGATTATGGGACGCTTGACTGATCT
CGTCCCCCCCCCC

Coding sequence (CDS) from alignment at chr_28:16667..21429+

>Ec-28_000040.2 ID=Ec-28_000040.2|Name=Ec-28_000040.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=489bp|location=Sequence derived from alignment at chr_28:16667..21429+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCACCGCGGGAGCAGATGGCGTAGTTAAGCTTTGGGACCTAGGAGC
TGCGGACGGATTCCCGGTTGCCGACTGGAGAGAGCACACGCAAGAGGTGT
CGGGCGTGGACTGGAATCTGGTTTCGAAGGGCTTGTTCGCGTCAGCTTCT
TGGGACGGCAGCGTGAAACTGTGGACACCAAGTGCGGGAGTATCGTCGCA
TACTTTTCGGGATCACGGGCGGCACCCCGTTTACGGTGCTATTTGGAGCC
CGTTTAGCCCTGGCCAGCTGCTCTCTTTCTCCGGGGATGGGACTGCGAGG
GTGCTCGATGTCAACAGCCCCGGTGCTGCGATTGTGCTGGACGGACACGG
GGGTGCGGAGGTCCTAGCGGGAGACTGGGACAAGTACAACCATCCAGTGG
TCGCCACGGGTTGCGCCGACGGGGCGGTGAAGACGTGGGACCTCCGTCAA
CCGAGGTATGTGTGTCCATCTTATCTGTTATGTTGTTAG

Synonyms

The feature 'Ec-28_000040.2' has the following synonyms


Synonym
Esi0120_0004
Esi_0120_0004