Ec-28_000040.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000040.1
Unique NameEc-28_000040.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length249
Homology
[Close]
BLAST of Ec-28_000040.1 vs. uniprot
Match: A0A6H5KU09_9PHAE (Peroxin-7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU09_9PHAE)

HSP 1 Score: 338 bits (867), Expect = 1.040e-101
Identity = 155/165 (93.94%), Postives = 160/165 (96.97%), Query Frame = 2 
Query:   23 MRLEASINLPFSCHAVEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVYGA 517
            MRLEASI+LPFSCHAVEFSPFDGER+AVATAQYFGIVGNGRLH+FGRH GDV +SSPAW+QRELRSFDTQAGLFDCAWSECHPHQMATAGADG VKLWDLGA DGFPVADWREHTQEVSGVDWNLVSK LFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVYGA
Sbjct:    1 MRLEASISLPFSCHAVEFSPFDGERLAVATAQYFGIVGNGRLHIFGRHGGDVTNSSPAWEQRELRSFDTQAGLFDCAWSECHPHQMATAGADGQVKLWDLGAVDGFPVADWREHTQEVSGVDWNLVSKDLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVYGA 165
[Close]
BLAST of Ec-28_000040.1 vs. uniprot
Match: D7FIF0_ECTSI (Peroxin-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIF0_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 8.240e-96
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 2 
Query:   68 VEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVYG 514
            VEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVYG
Sbjct:   19 VEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVYG 167
[Close]
BLAST of Ec-28_000040.1 vs. uniprot
Match: W2R913_PHYPN (Peroxin-7 n=14 Tax=Phytophthora TaxID=4783 RepID=W2R913_PHYPN)

HSP 1 Score: 157 bits (397), Expect = 1.630e-38
Identity = 75/132 (56.82%), Postives = 92/132 (69.70%), Query Frame = 2 
Query:   62 HAVEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTP 457
            +AVEFSPF    +AV TAQYFGIVGNGR HV+        +  PA     +R+FDT  G++DCAWSE H  Q+ ++ ADG VKLW L   D FP+ ++ EH QEVSGV+WNLVSK  FASASWDG+VK+W P
Sbjct:   15 YAVEFSPFVDNLIAVGTAQYFGIVGNGRQHVY--------EMLPAGGLAPIRAFDTPQGIYDCAWSENHGQQLVSSCADGSVKLWHLQTRDQFPIQNYHEHKQEVSGVNWNLVSKDSFASASWDGTVKIWKP 138
[Close]
BLAST of Ec-28_000040.1 vs. uniprot
Match: A0A225V9Y1_9STRA (Peroxin-7 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V9Y1_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.160e-37
Identity = 77/144 (53.47%), Postives = 96/144 (66.67%), Query Frame = 2 
Query:   62 HAVEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDH 493
            ++VEFSPF    +AV TAQYFGIVGNGR HV+        +  PA     +R+FDT  G++DCAWSE H  Q+ ++ ADG VKLW L   D FP+ ++ EH QEVSGV+WNLVSK  FASASWDG+VK+W P    S  T  +H
Sbjct:   15 YSVEFSPFVDNLIAVGTAQYFGIVGNGRQHVY--------EMLPAGGLAPIRAFDTPQGVYDCAWSENHGQQLVSSCADGSVKLWHLQTRDQFPIQNYHEHKQEVSGVNWNLVSKDSFASASWDGTVKIWKPEVPHSILTLAEH 150
[Close]
BLAST of Ec-28_000040.1 vs. uniprot
Match: A0A8K1CUU6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUU6_PYTOL)

HSP 1 Score: 153 bits (386), Expect = 4.240e-37
Identity = 72/137 (52.55%), Postives = 94/137 (68.61%), Query Frame = 2 
Query:   62 HAVEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVS 472
            +AVEFSPF    VAV TAQYFGI+GNGR +VF        + +P  +   +R+FDT  G++DCAWSE +  Q+ +A A+G +KLWDL   D FP+ ++ EH QEVSGV+W+LV+K  F SASWDGS+KLW P    S
Sbjct:   15 YAVEFSPFVDNLVAVGTAQYFGIIGNGRQNVF--------EMTPNGELAPIRAFDTPEGVYDCAWSETNGQQLVSACANGSLKLWDLQTRDNFPIQNYHEHKQEVSGVNWSLVAKDAFVSASWDGSIKLWRPELPTS 143
[Close]
BLAST of Ec-28_000040.1 vs. uniprot
Match: D0NPH8_PHYIT (Peroxin-7 n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NPH8_PHYIT)

HSP 1 Score: 158 bits (399), Expect = 4.470e-37
Identity = 77/132 (58.33%), Postives = 92/132 (69.70%), Query Frame = 2 
Query:   62 HAVEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTP 457
            +AVEFSPF    VAV TAQYFGIVGNGR HV+        +  PA     +R FDT  G++DCAWSE H  Q+ ++ ADG VKLW L   D FP+ ++ EH QEVSGV+WNLVSK  FASASWDG+VK+WTP
Sbjct:   15 YAVEFSPFVDNLVAVGTAQYFGIVGNGRKHVY--------EMLPAGGLAPIRVFDTPQGVYDCAWSENHGQQLVSSCADGSVKLWHLQTRDEFPIQNYHEHKQEVSGVNWNLVSKDSFASASWDGTVKVWTP 138
[Close]
BLAST of Ec-28_000040.1 vs. uniprot
Match: H3HBK4_PHYRM (Peroxin-7 n=2 Tax=Phytophthora TaxID=4783 RepID=H3HBK4_PHYRM)

HSP 1 Score: 156 bits (394), Expect = 9.980e-37
Identity = 75/132 (56.82%), Postives = 91/132 (68.94%), Query Frame = 2 
Query:   62 HAVEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTP 457
            ++VEFSPF    VA+ TAQYFGIVGNGR HV+        +  PA     +R+FDT  G++DCAWSE H  Q+ ++ ADG VKLW L   D FP+  + EH QEVSGV+WNLVSK  FASASWDGSVK+W P
Sbjct:   15 YSVEFSPFVDNLVAIGTAQYFGIVGNGRQHVY--------EMLPAGGLAPVRAFDTPQGVYDCAWSENHGQQLVSSCADGSVKLWHLQTRDQFPIQSYHEHKQEVSGVNWNLVSKDSFASASWDGSVKIWKP 138
[Close]
BLAST of Ec-28_000040.1 vs. uniprot
Match: A0A662WRL8_9STRA (Peroxin-7 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WRL8_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.220e-36
Identity = 72/130 (55.38%), Postives = 90/130 (69.23%), Query Frame = 2 
Query:   68 VEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTP 457
            VEFSPF    VAV TAQYFGIVGNGR HV+        +  PA     +R+FDT  G++DCAWSE H  Q+ ++ A+G +KLW L   D FP+ ++ EH QEVSGV+WNLV+K  FASASWDG+VK+W P
Sbjct:   48 VEFSPFMDNLVAVGTAQYFGIVGNGRQHVY--------EMLPAGGLAPVRAFDTPEGVYDCAWSENHGQQLVSSCANGSLKLWHLQTRDQFPIQNYHEHKQEVSGVNWNLVAKDSFASASWDGTVKIWKP 169
[Close]
BLAST of Ec-28_000040.1 vs. uniprot
Match: A0A1V9YMY2_9STRA (Peroxin-7 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMY2_9STRA)

HSP 1 Score: 150 bits (380), Expect = 2.790e-36
Identity = 77/155 (49.68%), Postives = 97/155 (62.58%), Query Frame = 2 
Query:   53 FSCHAVEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVYGA 517
            FSC+AVEFSPF+   VAV TAQYFGI+GNG+  V   HA    D +P      LR+FDTQ G++D AWSE H +Q+ +A A+G +KLWD+   D FP+  + EH  E S V+WNL  +  F S SWD +VK+WTP    S  T   H   PVY A
Sbjct:   12 FSCYAVEFSPFNEHWVAVGTAQYFGIIGNGQQIVMELHAN--GDLTP------LRAFDTQDGVYDVAWSETHANQLVSACANGHLKLWDITTVDSFPIQTFAEHALEASSVNWNLTDRQTFCSGSWDTTVKVWTPQRTASLLTLTGH-TGPVYNA 157
[Close]
BLAST of Ec-28_000040.1 vs. uniprot
Match: A0A8J5J2Y4_9STRA (WW domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J2Y4_9STRA)

HSP 1 Score: 154 bits (390), Expect = 3.950e-36
Identity = 75/132 (56.82%), Postives = 92/132 (69.70%), Query Frame = 2 
Query:   62 HAVEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTP 457
            +AVEFSPF    VAV TAQYFGIVGNGR HV+        +  PA     +R+FDT  G++DCAWSE +  Q+ ++ ADG VKLW L   D FP+ ++ EH QEVSGV+WNLVSK  FASASWDG+VK+W P
Sbjct:   20 YAVEFSPFVDNLVAVGTAQYFGIVGNGRQHVY--------EMLPAGGLAPIRAFDTPQGVYDCAWSENNGQQLVSSCADGSVKLWHLQTRDQFPIQNYHEHKQEVSGVNWNLVSKDSFASASWDGTVKIWKP 143
The following BLAST results are available for this feature:
BLAST of Ec-28_000040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU09_9PHAE1.040e-10193.94Peroxin-7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxI... [more]
D7FIF0_ECTSI8.240e-96100.00Peroxin-7 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
W2R913_PHYPN1.630e-3856.82Peroxin-7 n=14 Tax=Phytophthora TaxID=4783 RepID=W... [more]
A0A225V9Y1_9STRA1.160e-3753.47Peroxin-7 n=1 Tax=Phytophthora megakarya TaxID=479... [more]
A0A8K1CUU6_PYTOL4.240e-3752.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0NPH8_PHYIT4.470e-3758.33Peroxin-7 n=1 Tax=Phytophthora infestans (strain T... [more]
H3HBK4_PHYRM9.980e-3756.82Peroxin-7 n=2 Tax=Phytophthora TaxID=4783 RepID=H3... [more]
A0A662WRL8_9STRA2.220e-3655.38Peroxin-7 n=2 Tax=Nothophytophthora sp. Chile5 Tax... [more]
A0A1V9YMY2_9STRA2.790e-3649.68Peroxin-7 n=1 Tax=Achlya hypogyna TaxID=1202772 Re... [more]
A0A8J5J2Y4_9STRA3.950e-3656.82WW domain-containing protein n=1 Tax=Phytophthora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:16667..25769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score323.2
Seed ortholog evalue1.1e-85
Seed eggNOG ortholog2880.D7FIF0
Preferred namePEX7
Length4283
KEGG koko:K13341
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
Gene idEc-28_000040.1
GOsGO:0000151,GO:0000268,GO:0001501,GO:0001503,GO:0001764,GO:0001958,GO:0003674,GO:0005048,GO:0005053,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005782,GO:0005829,GO:0006082,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006662,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007031,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0008610,GO:0008611,GO:0009056,GO:0009058,GO:0009062,GO:0009653,GO:0009887,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016042,GO:0016043,GO:0016054,GO:0016477,GO:0016558,GO:0016560,GO:0017038,GO:0018904,GO:0019395,GO:0019752,GO:0019899,GO:0022008,GO:0030154,GO:0030258,GO:0031090,GO:0031461,GO:0031903,GO:0031907,GO:0031974,GO:0032501,GO:0032502,GO:0032787,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034440,GO:0034613,GO:0036075,GO:0040011,GO:0042277,GO:0042579,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046395,GO:0046485,GO:0046504,GO:0046907,GO:0046983,GO:0048513,GO:0048699,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051674,GO:0055085,GO:0055114,GO:0060348,GO:0060349,GO:0060350,GO:0065002,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0080008,GO:0097384,GO:0098588,GO:0098805,GO:1901503,GO:1901575,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.peroxisome matrix targeting signal-2 binding
EggNOG OGsKOG0277@1,KOG0277@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000040Ec-28_000040Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 16667..25769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000040.1Ec-28_000040.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 16690..22256 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000040.1.1Ec-28_000040.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 16667..16734 +
Ec-28_000040.1.2Ec-28_000040.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 17480..17623 +
Ec-28_000040.1.3Ec-28_000040.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 18053..18137 +
Ec-28_000040.1.4Ec-28_000040.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 18922..18996 +
Ec-28_000040.1.5Ec-28_000040.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 19515..19655 +
Ec-28_000040.1.6Ec-28_000040.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 19777..19877 +
Ec-28_000040.1.7Ec-28_000040.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 20174..20292 +
Ec-28_000040.1.8Ec-28_000040.1.8Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 22220..25769 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0000405UTR:Ec-28_000040.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 16667..16689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000040.1CDS:Ec-28_000040.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 16690..16734 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0000403UTR:Ec-28_000040.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 22257..25769 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000040.1 ID=Ec-28_000040.1|Name=Ec-28_000040.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=249bp
MRLEASINLPFSCHAVEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAG
DVADSSPAWQQRELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDL
GAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVS
SHTFRDHGRHPVYGAIWSPFSPGQLLSFSGDGTARVLDVNSPGAAIVLDG
HGGAEVLAGDWDKYNHPVVATGCADGAVKTWDLRQPRGRGRGRGPRGC*
back to top

spliced messenger RNA

>Ec-28_000040.1 ID=Ec-28_000040.1|Name=Ec-28_000040.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4283bp|location=Sequence derived from alignment at chr_28:16667..25769+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CTCTCTCTCGGCGGGCGAACATCATGAGGCTTGAAGCGTCGATTAACCTT
CCCTTTAGCTGCCATGCGGTGGAGTTCAGCCCGTTTGACGGCGAGCGGGT
GGCGGTGGCGACAGCCCAGTACTTCGGCATCGTTGGGAACGGGCGGTTGC
ACGTCTTCGGCAGACATGCGGGAGACGTTGCGGACAGCTCGCCCGCCTGG
CAGCAGCGAGAGCTGCGGAGCTTCGACACGCAGGCCGGGCTGTTCGACTG
CGCGTGGAGCGAGTGCCATCCCCACCAGATGGCCACCGCGGGAGCAGATG
GCGTAGTTAAGCTTTGGGACCTAGGAGCTGCGGACGGATTCCCGGTTGCC
GACTGGAGAGAGCACACGCAAGAGGTGTCGGGCGTGGACTGGAATCTGGT
TTCGAAGGGCTTGTTCGCGTCAGCTTCTTGGGACGGCAGCGTGAAACTGT
GGACACCAAGTGCGGGAGTATCGTCGCATACTTTTCGGGATCACGGGCGG
CACCCCGTTTACGGTGCTATTTGGAGCCCGTTTAGCCCTGGCCAGCTGCT
CTCTTTCTCCGGGGATGGGACTGCGAGGGTGCTCGATGTCAACAGCCCCG
GTGCTGCGATTGTGCTGGACGGACACGGGGGTGCGGAGGTCCTAGCGGGA
GACTGGGACAAGTACAACCATCCAGTGGTCGCCACGGGTTGCGCCGACGG
GGCGGTGAAGACGTGGGACCTCCGTCAACCGAGGGGCAGGGGCAGGGGCA
GGGGTCCCCGCGGCTGCTAGACCGGTGTGTGGGCCACACGGAGTTTGTCG
CGGGGGTGGCGTTTTCGTTGTTCGAGCCGCGTTTGATGGCTACCTGCGCG
TGGGATCGGCGGCTTTGCTTTTGGCGGTCGTTGTGAGGATACACTACTTA
ATGCATGACGCGAACGAACGTGTTTTTGCTTCGTTTTGGTGCATACATTT
ATGTTTCCGTGTGTGTGTGCATACCATGAACTATGTACATGCCCGGTGTT
GTTTGTTAGAGTTCTGTGTTTGTGCGAGACGGAATGTTACCCGTTGTGGA
TGTTGTTCTTTTGTTCTTCTGTTGTAGTGCTTGTGCGAGACGGACGCGTG
TGTGTGGTGGAAGTGCCGCTGCGATGCCGCGTCCGGAAATGTTCTGCCCA
AGTTCGGCAGCTCCCCGTCTATTGTAAGCTCCTACTCGCTCGCGTGTCAG
GGTGTGCCTAAAGTGATACCCACGGTGGATTTGTAGATGTACCAGCAAGG
GTAAATCTGTGTATTGGAAAAGTGTGGGACGAGTTGGTTTTATCGTTCGT
TCTTGAACCAACACATATTGATTTGGGTGCTGTTTCTTCACGCACCACCT
GATTTATGACCGACCGACCGACCGACCGACTCATAATGCAAGATGCTAAT
TAATGCATGATGCTAGAAGAAGAGGTGGGCTGTACTCCGCCTTTCCCTGA
CAACAGGTGCTCCATTTGTTGATGATGCTGTTGTTGACAGCGCTGACCGG
CTGAAAAAATAAATGGTCGGCGCTCTTGGCGGGACACGTGCTCTCTAGGA
CCCTCCGCGTACGTTGGCATCAACAAGCTATTACAGTACCCACCACCAAA
GATCATTCTTATACCATCTAGGGCTGGCCAGCCCTAACACGGCTTCCACA
CGGTCGCAGATCTGCCGCTGCTGCCGTAGGCCTCTCTACAAGTGAGCCGT
TTAGCAGCATCCATTGTGACGGCAGGGGATCCCGGAGAGATTTCATCGTG
TATTTTTTTTTGCATAAACACGCGAGGAACGCCAACTCTTTCGTTTGAGT
TTGTTGTCGGTGGTTCGTGGAAATTTAGGCATCATTAGAGCTTCAGGGAT
GGATCCTCTCCACTTTCAACGCTCCTCCAGCGACAGCGGGAGGAGTGTGA
AGTGCAATAACCATGTTGGGCACCAACATTTGGTATCACGAGAGGAAGCA
CCTTCGTCCACGTTTCGATCCACGTTCCAACGCTGTCCTCTGGAAATCGT
TGTTTCCTTCTTACAAGGCTCGTGATGACCGGCGCGAGAACCTGAGACGC
ATGAAAACACATCGGTTAACTATTCATATACTCATTTTCACTCAAACGTA
TATATAGCGAGAGAGTGGCCAAAAATCAACCATGGAATCCCTCATGCTTG
GCGATACATCGAAAAAAAACTTACTAACGACATCGGTGCCATAACGCTCG
AGTGCACAACAGCCTCCGTAAGAGAGAGCACAAACCAACGAAAACCGTGT
GGGTGCCGCTACTGCCTGGTAGACAACAAATGATCCACCCATACCGTCCG
TTCCGGTTCCGGAGCAGCAAGAGCCATCGACAACGTTTCCGAATAAAATC
TACTTCGCTGCCCTGGTGCAGCGGAAAGTACAGTAGTTCCGCCACAACGA
AAGGCAGGCAGGCAGGCAGGCATGCTTGGTTCCACCAAGAAACCCGCAAA
ATTTGAAACTTGGGGGAGGATCAAATCCACACTACAATGTTCGAGGTTCG
CACGTACGTACAGCAAGCGCTACCAACGCCCGGAATGGCGCGGAAACAAG
CGCTCCTGTCTACTCGGGAAGGACGGACGTCCAGCAGATGTCTTCGGAAT
CGCTGTTTGCTAAAAAGTCCGGAAGCCGCACCCCAAACACGCAAAGACTA
GCCGCGGCGAATTTCTCGTTTGTGTTTGAGGCAGGCTCGAAGTAACGGAA
ACGCGAACACGCTCTCGGGTACACACGCGCACCCCAAAAAGCTCAATCGT
CTCGCCGCTAAAACAGCGCCATCTTCGCGTATACACACAAAAAAGTCCGA
ACCTTGATCGTCTCGAGGCAAACAGTTGACGGCCGGCCCCGTGGATTTAA
TAGCGCCTCTTTGTACAGGCGGATAACCGAACTTGCTACCCTTATTCGCC
GCCAGGCATCCCCAAAAAAAAAAAAAACACCGAGAGAACACAGTAGCCAA
ATGTTCTCAAGAGTAACCAGACCAGGCACGTTTCGTAACAAGGAGGAGAG
AAAAACAACTACTTATAGCACAGGCCAACATTAGAAGCACAGACATAAAA
TTACTCGCTGCGAATGCAGCGACTAGTGCACACAAGAGTGAACGCCAAGC
GCAACGCACGCCGGCCCATAACGCCGACGCATGAAGCGAGCGGTTCGTGA
GTCGAGTCGGCCGCGAGCAAGTGCTCGGGGGCACCGGGCCGCACGGCAGG
CGCTCATCACTACGATCACAGTTCAATCAGCGTGCCCCCCCCTGCAGCAA
GGGCAATCCGCGGCGAATGACACCGAAGGAGTCAGGTCGAGCCAAACCCG
AACGCAAAGTAGCGGGAGCAAAAAAAGGAAAACAAGTACACACGCAATCT
ATCCCCACCCCTCCTCCAGGGCATCATACTCTAAAAAGCGTCACCACGTC
TGGCGCATACCGTGAAAACAGGAAAGGACAAGGAGCGATTGCGCTGAACT
CGTCTCTTCCCGCCGGTGATTGGCCCAATTGCCTCCGTCCCCCCCCCCCA
CACACAGCAGCCATAGCACCCGATACCCGCTGTCACCGTTTCGCGCACGA
ATCGTTTACGCAGACACACAGCTGGGCATTGTACCGTAGAGAGCGGAGGC
AAGAAACAAAAGAAGGAACGGAGAGACAAAAAACAAGAAAAAACATAAAA
AGGCCAACGCCCTCCACATCATGGCACACGACACATCATCAGGACTCTCC
ACACGCCGATGTAGTCTCCCCTCTCTCTTCATATGGGCCCCATCGTGAAA
CAAAACCAAAAAAAAAAAAAAAAAAGCCCACAAGTCCATATGACAACCCT
CCCCGAATGCACGCCCAAGGGCCACGCAAGGGAAGAAGTCAATCGAGCAG
CACTGGCGTCCGGATGTAGTTCTCACTTGCATCAGCACCATCACAGATGA
ACGCGTGCGTGCATCGCGGACACGAGACAAAGTCGCGCTCTTAACACGTT
GCTCTCCCTCTCTCTCGCCGAAAAAACAAACGTTCTTTTGCCAAACTATT
CAAGGGAAAGAAACCTCTTTCCCTCCTGCCAATCCTCCCCCTCCCAGTTC
TAAATCAACACCCGGTGTGGATGATGGAAATGTCCACCCTGAAAGGGCGG
ATGCTTTAAAAAGAATGGGACTGTACACAAGCGACAGGGAGAAAAAAACA
GATGACAGCTATAAGCCCCTCTCAAAACACACAAGGTGCGGGAGCAGTTA
CCAGTTATAGCGCGCGCTACTATTTACTTTACGCTTGGCCTCAATCGGGA
GGTGTTGCCGGCCGGCCTTCAAATCCTGTCCTT
back to top

protein sequence of Ec-28_000040.1

>Ec-28_000040.1 ID=Ec-28_000040.1|Name=Ec-28_000040.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=249bp
MRLEASINLPFSCHAVEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAG
DVADSSPAWQQRELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDL
GAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVS
SHTFRDHGRHPVYGAIWSPFSPGQLLSFSGDGTARVLDVNSPGAAIVLDG
HGGAEVLAGDWDKYNHPVVATGCADGAVKTWDLRQPRGRGRGRGPRGC*
back to top

mRNA from alignment at chr_28:16667..25769+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000040.1 ID=Ec-28_000040.1|Name=Ec-28_000040.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=9103bp|location=Sequence derived from alignment at chr_28:16667..25769+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CTCTCTCTCGGCGGGCGAACATCATGAGGCTTGAAGCGTCGATTAACCTT
CCCTTTAGCTGCCATGCGGTGAGATCTTTTAGGCTCGTTGGCAAGAACGA
TTGTGTTCTGCCCCGCCTTTAGCGTGTCTCCTCGCATTCACGCGCATGAT
TTCAAAGACCCGACAGCAGGTTGCGTCTCCCCGTGCTTTATCATGCAGCA
GCTGTAGACCTCCCCCGCTGAAGATATTCGACACATCGGGTGCCGCACTC
AAGGCGGGCACCACTTCCCTGCAAGAGGATCATCTTTACTCTCGGTATGA
ATACATGTGTCCCACCTGCACCTTCGCCGGCCATATGGTTCCCAGTACCG
AACTCTGCCCTATTCCGCATGATGATCTGATCCAGCTCGTTCGCGTTCAT
GACAGCAACCCGTAGCCTTTCACACGGAAGCTGGTCCGTAACTGCTATCC
ATGCAAGCAGGATATTATACACCGCCCAGGGGTGGCACCGCCATGTGGTA
TCACCACCTGTACCCACACTCGGCACAGCTGGAGGAGGAGCCTTGAAACC
GTTCATGGGCCGGGTGATACGCCCTGTCGCTCGCGGAACTCTGTTTCCCC
TAGGTTGCTGTTTCGCATTCTGTTTTTTAAAAAAACAAGTACAATTATTA
CTGATGGGTATTATTCAGATCACCACGCGCAACCCGTCGTCACGACTCAG
CGATCACTGATCATGTATGTGTCCCTTTCGTTCGAACGAACCTGTGCGCC
TTCGAATTTCGACCAAGTGTTACTAATACTTTTTTGCGAACGACTCCGAC
CACCACCACCAAGGTGGAGTTCAGCCCGTTTGACGGCGAGCGGGTGGCGG
TGGCGACAGCCCAGTACTTCGGCATCGTTGGGAACGGGCGGTTGCACGTC
TTCGGCAGACATGCGGGAGACGTTGCGGACAGCTCGCCCGCCTGGCAGCA
GCGAGAGGTGTGACTCGACACGTTGTCGGGGACGGACGGCGTTTCCTTAG
TGTAGCCTTCGCGAGCAAATAACAAGCTTGGTTTTAGTGGCGGGGCTGTA
CGTACGTGTTTGGGAGTTACGGTAACGGGTATCTCTTTATTAATTCACAT
ACATGCCACGCTTACTTGTCGTCGCGACGGCGGTCGACGTGTTCGGTCCA
CTCCGAGGGCGCCGAGAAGTCGACGGAGGGGGGCAACAGCAGCGGCATTT
GGCTGGTTTCATCAAGGCGGGGAAGCAGGGGTTGCGGCGCGGGGGCTGCG
CACGTCCACGACTAAAAAAATCGACAACACCACGTGTTTGGAAATCTTGT
CAGACGACGACAAGGCGCGCCCTTTTTTCTTCCCCGTCAGGGCTACATAA
CAAGACTGCTGCTACGCTCGTTGTCTTGCGCAGTAGCTGCGGAGCTTCGA
CACGCAGGCCGGGCTGTTCGACTGCGCGTGGAGCGAGTGCCATCCCCACC
AGATGGCCACCGCGGGAGCAGGTTTGTGCGACTGACAGCATTTTTTAAGC
TGTAGTGGGGGTACGGCGGCGTGATGATCCGTTGTTGCCATCTCCTTCAA
GCACGCACGGTTGCCTCCTCCCTTGTCATCGCCAACTGGTTCTTCAATGA
GTTCATGTCAATATTCGGTTTTTAAAACACTGCATCAGCACACCACCAGC
AAACCTCACACGCCAAACGAAGTTGGCATGGCAAAGCGTTGCTTCGGCTT
TTCGCCGTCGTGGATGTCTTGAGCCTGAGGATTGCCCCCGCCGTTCCCAG
GCCGGACTGCAACGTACTCCTGCAGCGTTCTTCTTTCTGGTTCCAGGACA
GATATGGAAACTCCAGCGCAGGCATCCTGTATTACCTTCTTTGAGTTGAG
CTCTGGGTAAAAGCGGTCCACCTGCCGCACCGCAATGAATCGTTCTTGCA
GGGTACCCACTACGGCTGCGGCCCACACAGAAGAAACGTCTGCTTGGGGT
TGCTCAATTTCTTATTCGTCACCACCGTCGAGCATAGATGGGGGTCATTT
GATAGAGTTTCCGTGTAGGATCCACGGCCGAGGTGTGCTGCTTAGTCGAT
TTGTCTTAGTTTTTTCGTGAAAAGTTTAGCCTCATTTTCTTCTGACTCAA
TTTTTCTTAATGGCGGGCCTGAACCGTACAAGAGCGCGCACTAGTTGTGT
GAGCACTGGGCTGAATAACCCCCGTGTTGAGCAGGCATCGTGGTCGAAAT
GACGTCACTGCTGTTTTTTTGTTTTGTTCGCTGCTCTAACCTGCTCCTAT
AATAGATGGCGTAGTTAAGCTTTGGGACCTAGGAGCTGCGGACGGATTCC
CGGTTGCCGACTGGAGAGAGCACACGCAAGGTATACATCGCACTTGAGAA
ATAAAAGGACAGGGCCAACCAGAAAACCTGCGGGAACTTTTCTCTTTCTC
TCGTTAAGGTTTGCCGAACAAAAACTGCTGTACGTATGTATTCCGTAGTA
AAGGTGTGCTTCAGGAAACCCGACCAATGTTTCGGCGGGACCGCGGGGGG
TTCCCATTTTCCGGTTGCTTGAAGAGAAAGAGTCGAGTTGGAAAACCTCA
GCGCCCGTCAGGGGAGACGTGCGGCATCTGTCGACCCTCTGGATAATTGT
AGCCCACCACCTCCCTCTGGCGCTCACCCGCCACATTTTCCCCCCGTGTG
GATCATGCAGCGTTATTATCTACCACGAAGTACAACCTTTCCAAAAGCAC
ACGATATTAGCTTATACACCTAACACGGCTTGACCCCAATAGCACACGAT
TTTTTGTTGAGACGCCCAACACTATTTGGCCCTGAAAGTACACGATTTCC
TATTTAGACGCCCAACACGGTTTGACCCCGCTTGGTCCTCCCTGTCAGAG
GTGTCGGGCGTGGACTGGAATCTGGTTTCGAAGGGCTTGTTCGCGTCAGC
TTCTTGGGACGGCAGCGTGAAACTGTGGACACCAAGTGCGGGAGTATCGT
CGCATACTTTTCGGGATCACGGGCGGCACCCCGTTTACGGTGAGGCAGAC
TACCATGCTTTCCTTGACAACAGCAGTGTGGCTGGAACGGAGCGGTCGAT
GCTAATAGAAAAGACACAACACACACACACACACACGCAACACACGTCGC
GCGCTCGCAGGTGCTATTTGGAGCCCGTTTAGCCCTGGCCAGCTGCTCTC
TTTCTCCGGGGATGGGACTGCGAGGGTGCTCGATGTCAACAGCCCCGGTG
CTGCGATTGTGGTAAGAAGAAGCACTTTTCTCGCTTCGGCGGTTGTATGC
GGCAGGTCACACCTTCACATGAAGAGGAAGTCGCCTAGAGTGAGCTAAGC
TAAGCTAAGCTAGGCAGGGTCGAGCCCACCTAGTCGACGTCTTTTGACCA
GAGGCCTAAACACGACAGTTGTCAAGGCACTCAGTCCTGTAAGCAGGCCT
TGACACGTCGAGCCCGCTAGACGGCGCGCCAGCTCAGAAAAGGTCGCGGC
ACACTGAAGATGGTAATGCGTCTGTTTTACGGTGATGAAATATCGGTGAT
TCAAAAGCTGGACGGACACGGGGGTGCGGAGGTCCTAGCGGGAGACTGGG
ACAAGTACAACCATCCAGTGGTCGCCACGGGTTGCGCCGACGGGGCGGTG
AAGACGTGGGACCTCCGTCAACCGAGGTATGTGTGTCCATCTTATCTGTT
ATGTTGTTAGCACCGACCGCGCCAACCTGTTGACCAACCAACGAAAAGAC
GCAAGTCTCAGTGCGGTTGAGAACAAAAAATGCTTCTAAAGGCCACGATC
TGGTACCCGGTGAGGGGGTGCGTGTGCGTGCGTGCGTGCGTGCGTGTGTG
TGTTTACTAGCATAGCGTCGACCGTGCCAACCGCGCTGATCAACGAAATT
ACGCCGGTGCCAAGCGGGTGAAATGAAAGTCCCTGGAAGGCGACGAAAAA
TTCAGGTGTGTGTGTGGTTTTTTATTATTAGCATCGACCGCGCTAACCCG
CTGACCAATGAAAAGACGCCAGTCTCAGTGCGGTTGAAAACACAACAAAC
TTCTAAATGTGTGTGAGTGCGCGCGCGTGTTTTGCGCCCGCGAGGAGCAC
CAGCGGGCGCAGGCCACGGCTGCAAGTACTCCTCTCCTGTCGCGGTGCTG
GCGGCGGCGGTGGGAGCTGGGTTCTACATGAATACGCACCTCGCTGCTTG
TTGTTTAGTTCCGTATCAGGTTTGAGTTGGCCCGGCGAAATGCCCGGCGA
AATTCTCCCCTTCTTTACACAAGGCTACATTCTCGCGTCCTTTCGCGCCA
ACCAACCCGTGGTGGTTTCGTTCGTGTTCTTTGAACCGTTCTTGCGACAC
GATGCCTTGTCGTGCCCTCGACTAACGAGTTCTTCGTCCATGCTGCCGCG
ACTCAATGTTTCGGCTTTCGCCCGTGTGGTGCTTTGGTCCTGCTGCGTGC
ATCCTCCGTCTGCAGTAGGGCGATTCGTTTGGTCTCTTGTTGGTGCACGG
TAATGACAACGCTTCCACAGCTCTGCTGTACCCGCACGTCGCCGCAAAGT
GTGCTGCCGGCGCCCACAAAGGCCGATGCCCTTAGTGAAATGGGTCTGGT
GTGCCAAAAACCGCCCGTTCAAACGTCAAAGCCCTTCTTGGGGCTTGTCA
CAAACAGCGCGAACCGTATTGAACAGGTGCGTGCGCTTGTGCCAGCATCC
GAATCGACACACGTTTCTCCGTAACACTTGAAGTGAAGCATGTGCATATG
TGAACTTTGAGATCCACATGCTGCAAGATTATGGGACGCTTGACTGATCT
CGTCCCCCCCCCCCCCCCCCCGCCCCCTCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGGGGGAGGGAGGGGGGGGGGGGGGCGGGGG
CAGGGGCAGGGGCAGGGGCAGGGGTCCCCGCGGCTGCTAGACCGGTGTGT
GGGCCACACGGAGTTTGTCGCGGGGGTGGCGTTTTCGTTGTTCGAGCCGC
GTTTGATGGCTACCTGCGCGTGGGATCGGCGGCTTTGCTTTTGGCGGTCG
TTGTGAGGATACACTACTTAATGCATGACGCGAACGAACGTGTTTTTGCT
TCGTTTTGGTGCATACATTTATGTTTCCGTGTGTGTGTGCATACCATGAA
CTATGTACATGCCCGGTGTTGTTTGTTAGAGTTCTGTGTTTGTGCGAGAC
GGAATGTTACCCGTTGTGGATGTTGTTCTTTTGTTCTTCTGTTGTAGTGC
TTGTGCGAGACGGACGCGTGTGTGTGGTGGAAGTGCCGCTGCGATGCCGC
GTCCGGAAATGTTCTGCCCAAGTTCGGCAGCTCCCCGTCTATTGTAAGCT
CCTACTCGCTCGCGTGTCAGGGTGTGCCTAAAGTGATACCCACGGTGGAT
TTGTAGATGTACCAGCAAGGGTAAATCTGTGTATTGGAAAAGTGTGGGAC
GAGTTGGTTTTATCGTTCGTTCTTGAACCAACACATATTGATTTGGGTGC
TGTTTCTTCACGCACCACCTGATTTATGACCGACCGACCGACCGACCGAC
TCATAATGCAAGATGCTAATTAATGCATGATGCTAGAAGAAGAGGTGGGC
TGTACTCCGCCTTTCCCTGACAACAGGTGCTCCATTTGTTGATGATGCTG
TTGTTGACAGCGCTGACCGGCTGAAAAAATAAATGGTCGGCGCTCTTGGC
GGGACACGTGCTCTCTAGGACCCTCCGCGTACGTTGGCATCAACAAGCTA
TTACAGTACCCACCACCAAAGATCATTCTTATACCATCTAGGGCTGGCCA
GCCCTAACACGGCTTCCACACGGTCGCAGATCTGCCGCTGCTGCCGTAGG
CCTCTCTACAAGTGAGCCGTTTAGCAGCATCCATTGTGACGGCAGGGGAT
CCCGGAGAGATTTCATCGTGTATTTTTTTTTGCATAAACACGCGAGGAAC
GCCAACTCTTTCGTTTGAGTTTGTTGTCGGTGGTTCGTGGAAATTTAGGC
ATCATTAGAGCTTCAGGGATGGATCCTCTCCACTTTCAACGCTCCTCCAG
CGACAGCGGGAGGAGTGTGAAGTGCAATAACCATGTTGGGCACCAACATT
TGGTATCACGAGAGGAAGCACCTTCGTCCACGTTTCGATCCACGTTCCAA
CGCTGTCCTCTGGAAATCGTTGTTTCCTTCTTACAAGGCTCGTGATGACC
GGCGCGAGAACCTGAGACGCATGAAAACACATCGGTTAACTATTCATATA
CTCATTTTCACTCAAACGTATATATAGCGAGAGAGTGGCCAAAAATCAAC
CATGGAATCCCTCATGCTTGGCGATACATCGAAAAAAAACTTACTAACGA
CATCGGTGCCATAACGCTCGAGTGCACAACAGCCTCCGTAAGAGAGAGCA
CAAACCAACGAAAACCGTGTGGGTGCCGCTACTGCCTGGTAGACAACAAA
TGATCCACCCATACCGTCCGTTCCGGTTCCGGAGCAGCAAGAGCCATCGA
CAACGTTTCCGAATAAAATCTACTTCGCTGCCCTGGTGCAGCGGAAAGTA
CAGTAGTTCCGCCACAACGAAAGGCAGGCAGGCAGGCAGGCATGCTTGGT
TCCACCAAGAAACCCGCAAAATTTGAAACTTGGGGGAGGATCAAATCCAC
ACTACAATGTTCGAGGTTCGCACGTACGTACAGCAAGCGCTACCAACGCC
CGGAATGGCGCGGAAACAAGCGCTCCTGTCTACTCGGGAAGGACGGACGT
CCAGCAGATGTCTTCGGAATCGCTGTTTGCTAAAAAGTCCGGAAGCCGCA
CCCCAAACACGCAAAGACTAGCCGCGGCGAATTTCTCGTTTGTGTTTGAG
GCAGGCTCGAAGTAACGGAAACGCGAACACGCTCTCGGGTACACACGCGC
ACCCCAAAAAGCTCAATCGTCTCGCCGCTAAAACAGCGCCATCTTCGCGT
ATACACACAAAAAAGTCCGAACCTTGATCGTCTCGAGGCAAACAGTTGAC
GGCCGGCCCCGTGGATTTAATAGCGCCTCTTTGTACAGGCGGATAACCGA
ACTTGCTACCCTTATTCGCCGCCAGGCATCCCCAAAAAAAAAAAAAACAC
CGAGAGAACACAGTAGCCAAATGTTCTCAAGAGTAACCAGACCAGGCACG
TTTCGTAACAAGGAGGAGAGAAAAACAACTACTTATAGCACAGGCCAACA
TTAGAAGCACAGACATAAAATTACTCGCTGCGAATGCAGCGACTAGTGCA
CACAAGAGTGAACGCCAAGCGCAACGCACGCCGGCCCATAACGCCGACGC
ATGAAGCGAGCGGTTCGTGAGTCGAGTCGGCCGCGAGCAAGTGCTCGGGG
GCACCGGGCCGCACGGCAGGCGCTCATCACTACGATCACAGTTCAATCAG
CGTGCCCCCCCCTGCAGCAAGGGCAATCCGCGGCGAATGACACCGAAGGA
GTCAGGTCGAGCCAAACCCGAACGCAAAGTAGCGGGAGCAAAAAAAGGAA
AACAAGTACACACGCAATCTATCCCCACCCCTCCTCCAGGGCATCATACT
CTAAAAAGCGTCACCACGTCTGGCGCATACCGTGAAAACAGGAAAGGACA
AGGAGCGATTGCGCTGAACTCGTCTCTTCCCGCCGGTGATTGGCCCAATT
GCCTCCGTCCCCCCCCCCCACACACAGCAGCCATAGCACCCGATACCCGC
TGTCACCGTTTCGCGCACGAATCGTTTACGCAGACACACAGCTGGGCATT
GTACCGTAGAGAGCGGAGGCAAGAAACAAAAGAAGGAACGGAGAGACAAA
AAACAAGAAAAAACATAAAAAGGCCAACGCCCTCCACATCATGGCACACG
ACACATCATCAGGACTCTCCACACGCCGATGTAGTCTCCCCTCTCTCTTC
ATATGGGCCCCATCGTGAAACAAAACCAAAAAAAAAAAAAAAAAAGCCCA
CAAGTCCATATGACAACCCTCCCCGAATGCACGCCCAAGGGCCACGCAAG
GGAAGAAGTCAATCGAGCAGCACTGGCGTCCGGATGTAGTTCTCACTTGC
ATCAGCACCATCACAGATGAACGCGTGCGTGCATCGCGGACACGAGACAA
AGTCGCGCTCTTAACACGTTGCTCTCCCTCTCTCTCGCCGAAAAAACAAA
CGTTCTTTTGCCAAACTATTCAAGGGAAAGAAACCTCTTTCCCTCCTGCC
AATCCTCCCCCTCCCAGTTCTAAATCAACACCCGGTGTGGATGATGGAAA
TGTCCACCCTGAAAGGGCGGATGCTTTAAAAAGAATGGGACTGTACACAA
GCGACAGGGAGAAAAAAACAGATGACAGCTATAAGCCCCTCTCAAAACAC
ACAAGGTGCGGGAGCAGTTACCAGTTATAGCGCGCGCTACTATTTACTTT
ACGCTTGGCCTCAATCGGGAGGTGTTGCCGGCCGGCCTTCAAATCCTGTC
CTT
back to top

Coding sequence (CDS) from alignment at chr_28:16667..25769+

>Ec-28_000040.1 ID=Ec-28_000040.1|Name=Ec-28_000040.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=747bp|location=Sequence derived from alignment at chr_28:16667..25769+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGGCTTGAAGCGTCGATTAACCTTCCCTTTAGCTGCCATGCGGTGGA
GTTCAGCCCGTTTGACGGCGAGCGGGTGGCGGTGGCGACAGCCCAGTACT
TCGGCATCGTTGGGAACGGGCGGTTGCACGTCTTCGGCAGACATGCGGGA
GACGTTGCGGACAGCTCGCCCGCCTGGCAGCAGCGAGAGCTGCGGAGCTT
CGACACGCAGGCCGGGCTGTTCGACTGCGCGTGGAGCGAGTGCCATCCCC
ACCAGATGGCCACCGCGGGAGCAGATGGCGTAGTTAAGCTTTGGGACCTA
GGAGCTGCGGACGGATTCCCGGTTGCCGACTGGAGAGAGCACACGCAAGA
GGTGTCGGGCGTGGACTGGAATCTGGTTTCGAAGGGCTTGTTCGCGTCAG
CTTCTTGGGACGGCAGCGTGAAACTGTGGACACCAAGTGCGGGAGTATCG
TCGCATACTTTTCGGGATCACGGGCGGCACCCCGTTTACGGTGCTATTTG
GAGCCCGTTTAGCCCTGGCCAGCTGCTCTCTTTCTCCGGGGATGGGACTG
CGAGGGTGCTCGATGTCAACAGCCCCGGTGCTGCGATTGTGCTGGACGGA
CACGGGGGTGCGGAGGTCCTAGCGGGAGACTGGGACAAGTACAACCATCC
AGTGGTCGCCACGGGTTGCGCCGACGGGGCGGTGAAGACGTGGGACCTCC
GTCAACCGAGGGGCAGGGGCAGGGGCAGGGGTCCCCGCGGCTGCTAG
back to top
Synonyms
The feature 'Ec-28_000040.1' has the following synonyms
Synonym
Esi0120_0004
Esi_0120_0004