Ec-28_000020.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_000020.2
Unique NameEc-28_000020.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length125
Homology
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BLAST of Ec-28_000020.2 vs. uniprot
Match: D7FIE9_ECTSI (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE9_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 4.950e-34
Identity = 71/86 (82.56%), Postives = 72/86 (83.72%), Query Frame = -3 
Query:    1 TLSFSRYQFPRRDC-CMYLP*ERALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYE 255
             +S S Y   RR      L  ERALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYE
Sbjct:   18 AVSASGYDVTRRKKGTAQLARERALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYE 103
[Close]
BLAST of Ec-28_000020.2 vs. uniprot
Match: A0A6H5JXE9_9PHAE (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE9_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 9.180e-34
Identity = 69/86 (80.23%), Postives = 73/86 (84.88%), Query Frame = -3 
Query:    1 TLSFSRYQFPRRD-CCMYLP*ERALSIKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYE 255
            T+S S Y   RR      L  ER+LS+KQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTF+CAVCDLPAYSSSSKFNSGTGWPSFYE
Sbjct:   17 TVSASGYDVTRRKKSTAQLARERSLSVKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFDCAVCDLPAYSSSSKFNSGTGWPSFYE 102
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BLAST of Ec-28_000020.2 vs. uniprot
Match: A0A6H5K2H7_9PHAE (DEP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2H7_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.280e-33
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query: 1174 YPSCFVGSDAVQWMIKSGLASDVAGAEALGDLLIDHGVFFHVTRRHMFENRRLFYRFMHDRLED 1365
            YPSCFVGSDAVQWMIKSGLASDVAGAEALGDLLIDHGVFFHVTRRHMFENRRLFYRFMHDRLED
Sbjct:   36 YPSCFVGSDAVQWMIKSGLASDVAGAEALGDLLIDHGVFFHVTRRHMFENRRLFYRFMHDRLED 99
[Close]
BLAST of Ec-28_000020.2 vs. uniprot
Match: A0A7S1T1M2_9CHLO (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T1M2_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 4.270e-10
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = -3 
Query:    1 RALSIKQRYV-VSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYE 192
            + LS  QR V +S  TEP FSG   NG  +  K RGT+ CA+  LP +SS++KF+SGTGWPSF++
Sbjct:   91 KGLSFFQRQVALSAATEPAFSGATINGYSHDNKNRGTYVCAIGGLPLFSSNAKFDSGTGWPSFWQ 155
[Close]
BLAST of Ec-28_000020.2 vs. uniprot
Match: A0A2V9NRI2_9BACT (Peptide methionine sulfoxide reductase MsrB n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9NRI2_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 4.530e-10
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = -3 
Query:    1 ERALSIKQRYVVS-GGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYE 195
            ++ LS +Q +V    GTEPPF+G++ N     +K  GT+ C  C  P +SS +KFNSGTGWPSFYE
Sbjct:   13 QKELSPEQFHVTRRAGTEPPFTGKYWN-----SKEAGTYKCVCCGQPLFSSETKFNSGTGWPSFYE 73
[Close]
BLAST of Ec-28_000020.2 vs. uniprot
Match: L1J5Z0_GUITC (Peptide-methionine (R)-S-oxide reductase (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J5Z0_GUITC)

HSP 1 Score: 67.8 bits (164), Expect = 1.150e-9
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = -3 
Query:    1 IKQRYVVSGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYE 180
            I +R V S GTE  F+G+  +G  Y +K +GT+ CAV  LP +SS  K++SGTGWPSF++
Sbjct:    9 ITKRVVFSHGTEMAFTGKTVDGTSYDSKEQGTYVCAVGGLPLFSSEHKYDSGTGWPSFFQ 68
[Close]
BLAST of Ec-28_000020.2 vs. uniprot
Match: A0A8B3MZ77_RHIML (Peptide-methionine (R)-S-oxide reductase n=17 Tax=Sinorhizobium TaxID=28105 RepID=A0A8B3MZ77_RHIML)

HSP 1 Score: 68.9 bits (167), Expect = 1.160e-9
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = -3 
Query:    1 RALSIKQRYVV--SGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYE 192
            RAL  + RY V    GTEPPFS    N      KR G F+CA C+LP YSS +K++SGTGWPSF++
Sbjct:   45 RALLGEDRYRVLREEGTEPPFSSALDN-----EKRNGVFHCAGCELPVYSSDAKYDSGTGWPSFWQ 105
[Close]
BLAST of Ec-28_000020.2 vs. uniprot
Match: A0A1Q3W279_9BRAD (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Afipia sp. 64-13 TaxID=1895701 RepID=A0A1Q3W279_9BRAD)

HSP 1 Score: 68.9 bits (167), Expect = 1.240e-9
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = -3 
Query:    1 ERALSIKQRYVV-SGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYE 195
            +RAL+ +Q Y++   GTE P+S   +N       R+G F+CA CDLP YSS +KF SGTGWPSFY+
Sbjct:   45 KRALTPEQYYILREHGTERPYSSPLNN-----EHRKGIFSCAGCDLPLYSSDTKFESGTGWPSFYD 105
[Close]
BLAST of Ec-28_000020.2 vs. uniprot
Match: B4X305_9GAMM (Peptide methionine sulfoxide reductase MsrB n=5 Tax=unclassified Alcanivorax TaxID=2638842 RepID=B4X305_9GAMM)

HSP 1 Score: 68.2 bits (165), Expect = 1.300e-9
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = -3 
Query:    1 RALSIKQRYVV-SGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYE 192
            R+LS ++R ++ + GTEPPF G   +      K  GT++C +CDLP ++SS+KF SGTGWPSFYE
Sbjct:   25 RSLSEEERRILLNQGTEPPFCGGLLDN-----KDDGTYHCKLCDLPLFTSSAKFESGTGWPSFYE 84
[Close]
BLAST of Ec-28_000020.2 vs. uniprot
Match: A0A3S0DU02_9BRAD (Peptide-methionine (R)-S-oxide reductase n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A3S0DU02_9BRAD)

HSP 1 Score: 68.6 bits (166), Expect = 1.890e-9
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = -3 
Query:    1 ERALSIKQRYVV-SGGTEPPFSGRFSNGVRYSTKRRGTFNCAVCDLPAYSSSSKFNSGTGWPSFYE 195
            ++ L+ +Q Y++   GTE PF+   ++      KR+GTF CA CDLP YSS +KF+SGTGWPSFY+
Sbjct:   50 KKQLTPEQYYILREAGTERPFTSPLNH-----EKRKGTFACAGCDLPLYSSETKFDSGTGWPSFYQ 110
The following BLAST results are available for this feature:
BLAST of Ec-28_000020.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIE9_ECTSI4.950e-3482.56Peptide-methionine (R)-S-oxide reductase n=1 Tax=E... [more]
A0A6H5JXE9_9PHAE9.180e-3480.23Peptide-methionine (R)-S-oxide reductase n=1 Tax=E... [more]
A0A6H5K2H7_9PHAE1.280e-33100.00DEP domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S1T1M2_9CHLO4.270e-1052.31Peptide-methionine (R)-S-oxide reductase n=1 Tax=T... [more]
A0A2V9NRI2_9BACT4.530e-1050.00Peptide methionine sulfoxide reductase MsrB n=2 Ta... [more]
L1J5Z0_GUITC1.150e-950.00Peptide-methionine (R)-S-oxide reductase (Fragment... [more]
A0A8B3MZ77_RHIML1.160e-953.03Peptide-methionine (R)-S-oxide reductase n=17 Tax=... [more]
A0A1Q3W279_9BRAD1.240e-951.52Peptide-methionine (R)-S-oxide reductase n=1 Tax=A... [more]
B4X305_9GAMM1.300e-950.77Peptide methionine sulfoxide reductase MsrB n=5 Ta... [more]
A0A3S0DU02_9BRAD1.890e-950.00Peptide-methionine (R)-S-oxide reductase n=1 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:4640..11892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length3802
Gene idEc-28_000020.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_000020Ec-28_000020Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 4640..11892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000020.2Ec-28_000020.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 6414..6788 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000020.2.4Ec-28_000020.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 4640..7268 -
Ec-28_000020.2.3Ec-28_000020.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 7615..7674 -
Ec-28_000020.2.2Ec-28_000020.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 10194..10253 -
Ec-28_000020.2.1Ec-28_000020.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 10840..11892 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0000203UTR:Ec-28_000020.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 4640..6413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_000020.2CDS:Ec-28_000020.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 6414..6788 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0000205UTR:Ec-28_000020.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 6789..7268 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_000020.2 ID=Ec-28_000020.2|Name=Ec-28_000020.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=125bp
MQILNVEYARLWTGVVYRGKVAYPLRTXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXPPRWFPKTRKWGEPPPPPPPIVFLVQKENPVFPLFYIGG
GGGVFFPPLGPPKGEKKKKVFWQF*
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spliced messenger RNA

>Ec-28_000020.2 ID=Ec-28_000020.2|Name=Ec-28_000020.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3802bp|location=Sequence derived from alignment at chr_28:4640..11892- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CTCGTAGAAACTGGGCCATCCCGTGCCGCTGTTGAACTTGGAAGAAGACG
AGTAGGCCGGGAGGTCACACACGGCGCAGTTGAAGGTGCCCCGCCTCTTG
GTGCTGTACCTGACCCCGTTCGAGAAGCGGCCCGAGAAGGGAGGTTCGGT
CCCGCCGCTGACGACGTAGCGTTGTTTTATGCTCAGCGCTCGCTCCTAAG
GCAGGTACATACAACAGTCCCGGCGTGGAAATTGATATCTGGAGAACGAC
AACGTCCATGGTCAACACCAACAACTTATAGAGGCCCGGCGGAGATCGCG
GAACAACATCTTCTGAAGGAACCAACCAACCAACAACTCACAGACCATTT
GAGCAGCAGATCGCAATGCTCCTAAAAACGCATACTTAGAATTACTAGAC
CAACCTCACAGACCAACATTGCTCTTCTTGGAGGGACCTGAGATTGACAA
CAATAGGCCGGGTTCGGTTTGTTTGCCTCGTGCATGTGCCATCATGCCCG
TCACGACGCGTACGCTAGGGAGGGGCCCAAGTTAGGGTGAACAAATAGAG
AAACAAGAATGATGGTTCACGGCGCGTTCTTGCCATAAAATCGCACACAA
CAAGAACTGCTCGTCCCTCGGGGTTACTGCTGTTGCGGTAAATTTAGACG
CTTTACGGTAAAACACCCGTCGCCCGTGTGCAGCAGTCTGTCGACAGCTC
TACACCAGTCACCATCAGGTCTTCTGCAGGCAGGGGCATTTTTGACTGCT
GGGTGTACCAAGGATACCTACAGCTGTAGACCCAGCTCTGTTTACACCAC
TGCTGCCGCCGGCGACTCATCGCGCAGTACTGCTTTGCTGGGCACCACGG
CACACCGCTGCTGCTGTACAACCTTTCGCTCGTGGCCTGCTCGGCAGCAC
GGCCTAACACCGCCGATTCACAAAGCACCGTCTCTCAGGCTTACCCTAGC
AAGCTGTGCGGTGCCCTTCTTCCTCCTTGTGACATCGTAACCGGACGCCG
ACACGGCACCAGCGACGACGCGCTTCGTGCTACTGCTGCTGTTGTTCTCC
GAGCGTGGGGTGTTCACCGAGATGTATTCGGATCACTTGAAGATGGACGC
GCAAGATATCAAGGAGGTGGCCAACCGCATGCGGAGGGAGCTCGAGATTG
TAGATCGCAAGTACCGTCTGCGGAAGTACCCGTCGTGCTTCGTCGGCAGC
GACGCGGTGCAGTGGATGATAAAGTCGGGGCTGGCGTCGGACGTGGCGGG
CGCAGAGGCTCTCGGCGACCTGCTCATTGACCACGGAGTGTTCTTCCACG
TAACACGGCGACACATGTTCGAGAACCGCCGGCTGTTCTATCGGTTCATG
CATGACCGACTCGAGGATTAAGAGAGGAGAGGACGATCGGCCGTTTGTCC
CGACCGGCTGTTTTAACGATTCATGCATGATCGACTCGAAGATTGAGAGA
GGAGACGACGGTCGGCCGTTGGTCCCGACCGGCTGGTTGACCAAAGCCTG
GAATCGGCAGGAACCCCACGCCCCCGCGCCCCACTAGACTTTGTTGGTCA
ACAAGCGAATACCTGGTATTCCGCTTTGTATATAGTGCGCGAGGATGGAG
GTATTCTTCGCCATCCTTGGTCGCAACAAGTGGAGAAGAATAAGGAAGTA
CGTATGCAGATATTGAACGTGGAGTACGCACGCCTCTGGACGGGTGTAGT
GTATAGAGGTAAGGTAGCGTACCCCTTGAGAACGCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCGGTGGTT
TCCCAAAACCCGGAAATGGGGGGAACCCCCCCCCCCCCCCCCCCCCATAG
TTTTTTTGGTACAAAAAGAAAACCCCGTTTTTCCCCTTTTTTATATTGGG
GGGGGGGGGGGGGTTTTTTTCCCCCCCCTTGGGCCCCCAAAAGGGGAAAA
AAAAAAGAAAGTTTTTTGGCAATTTTAAAAGGGGGGGCCCCCCCCCTTTC
GGGGGGGTTTTTTTAAAAAAGAAAAGGGGGCTCCCCCCTGGAAACCCCCC
CCCCCCCCCCCCCCCCCTCCCCAAACGTACGGTACGACTGGTGAAGCCCC
CAAACCCCAAACCTCTTAGAGAACGCCCAGGAGCATTGTTATGTTCGCCC
CGGAACCACTGACTTTGCCGGGCGGCTTGCTCTTAGGCCATTATTTTTTA
TTATTCTGCCCTCCTGGATGTGCACAGAAAATCTATGGCATTCGTTGGTA
CCGGCCGGGAACGTATGTACGTTGTTGTTGTTGTTCTATGTTGTCGGTGT
TGCTGTTGCCAACTGTACATTGTCGCACCCTGACATACGTGGTACGTGGT
AAGTGCAGGACTTGACTGCCACGAGACTGGGTATTTACGAAGCAGAGCAG
CCTGACGTATGGGTTCGGGAACTTGACGTTGGCACGTGGGGCTCGTACCG
CCGAGCCATGACGGGGTGGCTGCGTGATTGGGTAGATGACGTAAGGAAAG
ACGGATACATACGTACAGGCCAAGCGCTGGTGTTTTCCGATCCCACGCAC
TCTTTTGTGTGTACGTGTGGGGGGGTGGGGTGGTTTTGGTCAGTGAAGCC
CTGGCAGCAAATAACATCCCGGCCTGGTTGGGGTACAAGGATAGAATCAG
GCGACTCGTACTGCTGTGTTGCCTTGGTTTGTGATGTTTGATTCTTATTA
CTTCGAAGACTGTAGTTTTGTTCTGCTTGGCATCGTGTGTTCCGAGCGGG
AGTGATGGGTTCTCTTTCTTCTTGTGCTCGATGGCCCCTCTTCCTGTCTC
TATCGTCCTTTTTCCGCACTCGTTGGTCTCCTGGGGCTTCTTGTGATCTG
TTATGTTTCTTGTTGATTATTTTCAGCATATATAGTCTATGCACCATTTT
TGAGTGTGCACGTGTGTTTGTCCTTTGGCCACGGAAGAAGGCGTTCGCGT
CAGTTAGCGCCACGTACGGTTATTATTTATTGTGAAGGCAACAACAACAA
CATCGAGGCTCTGCGCTTTTCGGACGCCAATTGCTCAGATGGGCGTAGGC
CGGTTTGCACTGTCAGCTAGATAGACTATATATGCATACGCGGTTCACTA
CTACACAGACAGATGGTGACCCTCTTTGATTTTTTGCAAAGGATGACTGG
GTGATGTTTGTAGCTATGGGATTGCCCTCTGGCGTGCTGTATCAGGATCT
TCGCGTTGTGGGGGCATTAAATAAATGTGCGGCGTTTGATTGGTCTAGTT
TGGGTGGCCAAAGGTCTAGCAGATACCAATCGATGCGGCCCGCACTAAAG
AACTTGGCCATAAGCACATACTAAGTGATATTTTTTTTCTAATACGTACA
GGTGCTTTGTCAAGAAGCCTACTCTTTTAGGGTTATTGTTAAACCGTGTG
TTTTTATTATTCCTTAAACCCTACATGTATTATTATGGTAAACATGTAGT
CGCCGTGGACAAAAAAAATAAGGATAAAGCTCCGGCAAATATAAGAGGTC
CCTAGCTCTCTTTGACAGCTCGGTATAATAATAGCTGTCTTTGACACATT
TCCCTGACTGAGTTGCTTGCTTATTGAAGGTGTCGTTGTACAGTATCACG
GCCGCGTGAGTCTAGATATCGGCCAGCGACAAATCATCAAATCATGCACC
AGCTGCAGCCAGTTGCCTCGCTTCCCGGTGTTGCTGCGCGACGCTGGAAA
TGTGAGTCTTTTGAGCCCCCCTCGCCTGACGACCTCACTAACTTACTTAC
TC
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protein sequence of Ec-28_000020.2

>Ec-28_000020.2 ID=Ec-28_000020.2|Name=Ec-28_000020.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=125bp
MQILNVEYARLWTGVVYRGKVAYPLRTXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXPPRWFPKTRKWGEPPPPPPPIVFLVQKENPVFPLFYIGG
GGGVFFPPLGPPKGEKKKKVFWQF*
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mRNA from alignment at chr_28:4640..11892-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_000020.2 ID=Ec-28_000020.2|Name=Ec-28_000020.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=7253bp|location=Sequence derived from alignment at chr_28:4640..11892- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CTCGTAGAAACTGGGCCATCCCGTGCCGCTGTTGAACTTGGAAGAAGACG
AGTAGGCCGGGAGGTCACACACGGCGCAGTTGAAGGTGCCCCGCCTCTTG
GTGCTGTACCTGACCCCGTTCGAGAAGCGGCCCGAGAAGGGAGGTTCGGT
CCCGCCGCTGACGACGTAGCGTTGTTTTATGCTCAGCGCTCGCTCCTAAG
GCAGGTACATACAACAGTCCCGGCGTGGAAATTGATATCTGGAGAACGAC
AACGTCCATGGTCAACACCAACAACTTATAGAGGCCCGGCGGAGATCGCG
GAACAACATCTTCTGAAGGAACCAACCAACCAACAACTCACAGACCATTT
GAGCAGCAGATCGCAATGCTCCTAAAAACGCATACTTAGAATTACTAGAC
CAACCTCACAGACCAACATTGCTCTTCTTGGAGGGACCTGAGATTGACAA
CAATAGGCCGGGTTCGGTTTGTTTGCCTCGTGCATGTGCCATCATGCCCG
TCACGACGCGTACGCTAGGGAGGGGCCCAAGTTAGGGTGAACAAATAGAG
AAACAAGAATGATGGTTCACGGCGCGTTCTTGCCATAAAATCGCACACAA
CAAGAACTGCTCGTCCCTCGGGGTTACTGCTGTTGCGGTAAATTTAGACG
CTTTACGGTAAAACACCCGTCGCCCGTGTGCAGCAGTCTGTCGACAGCTC
TACACCAGTCACCATCAGGTCTTCTGCAGGCAGGGGCATTTTTGACTGCT
GGGTGTACCAAGGATACCTACAGCTGTAGACCCAGCTCTGTTTACACCAC
TGCTGCCGCCGGCGACTCATCGCGCAGTACTGCTTTGCTGGGCACCACGG
CACACCGCTGCTGCTGTACAACCTTTCGCTCGTGGCCTGCTCGGCAGCAC
GGCCTAACACCGCCGATTCACAAAGCACCGTCTCTCAGGCTTACCCTAGC
AAGCTGTGCGGTGCCCTTCTTCCTCCTTGTGACATCGTAACCGGACGCCG
ACACGGCACCAGCGACGACGCGCTTCGTGCTACTGCTGCTGTTGTTCTCC
GAGGTCATGCCTGTAGCTTTCCGTGTTCCTGGTTTGTGGCCTGCAGATGG
AGATGTCGCGTTGCTTGATTGTGAGCTTTGTGAGCGCCGCAGCCAGGAGC
AGCAGCGGTTTTTGTCGATGCCTCCGGTCTCGGGTGAATGCAATGTGTCT
TCAACCCCACGACCCCGCGGACCGCGGTAACACTTCTTACCGACGGGACT
GTCGAGACGATACAACACCGGGGTTTGTTTTACGCACTTCGTTACAGCAG
TCAGTTGCGGAGCACCAAGACACCGCATGATGAGGAATAGCGGCTACACT
ATTAGCAGGTTGGATATGCCGTTGAATCCCCGAAGCCCTGGCCCTGAGGG
TATCATCATGTACAAGCATAAGAAGCAGCTAGCTATGTCTCTTCCGAATG
TACAGCAGTCAAATCTCTTTTTTTTTCCAAATGCATCGTGTCACTGTGTA
GAGCTCTAGAGCCGGTGCCGACAACAAGCGGCGTGATTCTTCGAATCTTC
CAGAACGCTTCTTTCTTTCTGTTCTGAGTCTGTTCTTCACTCCACCCGTC
TCCTGCGCGCTCCCCACCCTCTGTTCTCGCCGGGCAAAGCGTGGGGTGTT
CACCGAGATGTATTCGGATCACTTGAAGATGGACGCGCAAGATATCAAGG
TGTGCATCTGGTACCATTTCAGTTGCAAATTACAGTTGTTTTCAACTCTA
CACAGACCACGCCTTTTTGGTCAAACAATTTGCGAACACAAATTGATGAT
TTGAATGATTATGATTTGACTCGTTTGCATCCCACGGTTAGACCAACGAC
CCTGTACTGTGCTGTAGACGGCACTAGATGGACCACGTGAGGCACATGCC
CAACCCTCCCCACGGTGTGGCATCTCTTGTTGAGAGCACGGTAGCACATA
ACGCCATCGCGAGAGAGCAGCGAATACGTAATTCGGTTGAACCCTCTGGT
TGAAACAGCTCGTTCGCCCACCGCTCAAAAATTTTCATGGGCGCGGCCAT
TTGTTAGATGAGCACGACCAGCGGACATGGTTTTATAGGCGGGATTCCAG
GAACAAGGACTGCTGTGCACGCACGTACCGTATACACCCAAAGGATATAT
GTACGAGAGAGGTGACGGGAGTTGACTGGAATGTGGAACGAAAGTTGAGC
CTGAAGACGACAAGAGATTTCCAAATTTCCTTCATATTTCCATGACGACA
GAGAGAGTCACCCATTCGTTCTGAAAGACGAACTATTTGGACTCACTAGG
CAGGTTGTAGAGGAGAGCCGGTATGCCCTTGCTCTCCATATCTCTCTATC
GTATGCTAAAGGTTGAGAGGGTATGGGCTGGAACGGTCAACCACGGCGGA
GAAATGAGGGACGGGGAAGCACCCGCCGTGGGTTTAATGCCGATCGTCGT
TCTGCAACCCACACACCGCCGTTCCTACCGACGCCCTTTGTCAGCAGCAA
CGTGGTCTTTTGGACCCTGAATGTGCACACCATCAAGGGGGCTTGAGCGA
ATCTGCTACGAGTTATTCTCCTCACATGTATACACGAGGTGTCGTACTGC
GGGAGGGGCTTAGTCTTTGCGGTAGCTTATTCTGGCGTGTGGAAATGTTA
CCTTGAGTATTTCCGGTGTATGGTAATGTATATCCGGCTGGGTTTATTAC
AGATAGATGCAAGATTGTGAGCTGTTCGTGCAGTATTTCCTTCTCTTCTT
CATCTAGCGCATGTCGTCACGGGAAAAAATCATTTATGTTCCCTGAGAGG
AGAGTGAGAGTGAGTCGTTCACCGGGAAGACGCCAAATGTTAATGTTCAT
GTTTAAACCCGTTTGTGGTTGCCCTCATCACATCATGAAGTATGTCACAA
ACCGTTCCGATGTCCCTCAGAACCTTTGAATATCCGAACTGGTCCGACTG
AGGCCGTTGCCTCCACAAAGAAACACCAAAAACAATTATTATACCAGCAT
TTTGTGAGCAATGAAAGGGAAATACACGACACAGGATATATCCCCTTGTT
GTTGTTGAATACAAAACGGTCGCTACGGTGACCGGCGGGTTTTAGTCAAG
AGCACTCGAGCGTGTAATAACGCCTCTCTCTGCGGTTAGTCTGAGAGAGT
ACCCCATCCAGTATTGTTTTACTTGAGTATTTGTTAACAATTCGTTCGTG
CTTCATGTGCGGGAACATTGCGGGCGCTCGCTGGTGGTGCCCCCAAAGAA
TATTTCCGGCTGTTCGGGGAGCGTACGTCGACCGCCGCGCGGCTGTCGTC
CACGGCGCGAGGGAGCACGCGGCGGCCGGTTGATTGTGGCGCCAGCGCCG
AAAGGCGCGCGCTGTCAGGGTAGCGGCCGGCTTTACCATGTTGGCGTTGG
TTTTGCCAGTGTGTGATTGGTCGTGTTTTGCCCCCCTTGAATCTGGGCGT
TGTGGTCACCGCCGTTGTCACAGCAGTGGTCAGGGGGTTTTCCTCGATTG
TTGTTTTTGTGGCGGTCGATGGCCGCCTAGCGGTCATTGGCTTGGTGTTG
GTGGCGATTGGGCTGACGGTGATGCTGCGATTGTTGCGGTCATTGTCTTG
TGAGGGCGGCATGGTCTGGTTCTTTCGAAGCCCCCTAAAAGGCTGTATCT
CAATGTACCTCTTAGAGGACGTATTTTCAGGGATCGGGATGCCAACTCTC
ATTGGTGCACCCGTAGCCAAAATGTTTTCCTTCGAAGAGAAGTAGTAGCT
GATACGTTACAGGGCTAACTCAAGTTTGGCCGAGTCGATGGGTGGTATAT
GACAGAACCTGGCAGTTTTGCTCCCGCTCGGTGGACACGTAGCCGATGCT
TACGCGCATACTTTCCACGTCGACGACGTGACAAACATGCTGCTTGTTGA
CAACAACGACTACGTTGGGTAGGTGGCCTGCGGCCACGGAAACCGTCCGA
GTCAATTAGGCCGCGGTAGTAGGCGTTAGAAGGTACTGAACAGAGACCGA
AACGGTTTCTATTGTGAAGACGATGACAACGACGACGACAGCAACAAAGC
AACCTTCCACTATTGCTAGCATACGGCTGGCTCTTTGTCCGCTCTTTGCC
CGCTATACGTGTCAATGGTGACTTCATTGTTGTGTCGACTGCCTTATTCA
GTACCCGCCCATTTGCTGTCTGTTGTATTGTGCGTCCCTCGCGATTGCCT
TGGTGCTCATTCATCCAGGAGGTGGCCAACCGCATGCGGAGGGAGCTCGA
GATTGTAGATCGCAAGTACCGTCTGCGGGTGAGTGGTTCAATGGCCCGAC
GGTAGTGACTGCATGCCTGACGTGTTGCAAGCCACTCACGTGGCGGAGCA
AATCAAGTTCGACGTCTGTCTCCCGCTTTCACGACTTGCAAAATCGAACG
AGAGCTTTTCTCAATGCCTTCCAGATAAATCACGACTACTGGTAGTAAAG
GAGTCACAGCGGGGCGAACCCGGTAACCCAGAAGGCGCCCCCACTGGTAT
CATGGCGATGACCAATCCTTCTTGCGAAGGAGATTTTCTGCGGGATACGG
CGTGTCTGCAGCAATCGACCCGGTTGTGGCCCCTCGCTCACGAGACGTGT
TGGACTTTGTTGCTCTCTCGACAGAAGTACCCGTCGTGCTTCGTCGGCAG
CGACGCGGTGCAGTGGATGATAAAGTCGGGGCTGGCGTCGGACGTGGCGG
GCGCAGAGGCTCTCGGCGACCTGCTCATTGACCACGGAGTGTTCTTCCAC
GTAACACGGCGACACATGTTCGAGAACCGCCGGCTGTTCTATCGGTTCAT
GCATGACCGACTCGAGGATTAAGAGAGGAGAGGACGATCGGCCGTTTGTC
CCGACCGGCTGTTTTAACGATTCATGCATGATCGACTCGAAGATTGAGAG
AGGAGACGACGGTCGGCCGTTGGTCCCGACCGGCTGGTTGACCAAAGCCT
GGAATCGGCAGGAACCCCACGCCCCCGCGCCCCACTAGACTTTGTTGGTC
AACAAGCGAATACCTGGTATTCCGCTTTGTATATAGTGCGCGAGGATGGA
GGTATTCTTCGCCATCCTTGGTCGCAACAAGTGGAGAAGAATAAGGAAGT
ACGTATGCAGATATTGAACGTGGAGTACGCACGCCTCTGGACGGGTGTAG
TGTATAGAGGTAAGGTAGCGTACCCCTTGAGAACGCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCGGTGGT
TTCCCAAAACCCGGAAATGGGGGGAACCCCCCCCCCCCCCCCCCCCCATA
GTTTTTTTGGTACAAAAAGAAAACCCCGTTTTTCCCCTTTTTTATATTGG
GGGGGGGGGGGGGGTTTTTTTCCCCCCCCTTGGGCCCCCAAAAGGGGAAA
AAAAAAAGAAAGTTTTTTGGCAATTTTAAAAGGGGGGGCCCCCCCCCTTT
CGGGGGGGTTTTTTTAAAAAAGAAAAGGGGGCTCCCCCCTGGAAACCCCC
CCCCCCCCCCCCCCCCCCTCCCCAAACGTACGGTACGACTGGTGAAGCCC
CCAAACCCCAAACCTCTTAGAGAACGCCCAGGAGCATTGTTATGTTCGCC
CCGGAACCACTGACTTTGCCGGGCGGCTTGCTCTTAGGCCATTATTTTTT
ATTATTCTGCCCTCCTGGATGTGCACAGAAAATCTATGGCATTCGTTGGT
ACCGGCCGGGAACGTATGTACGTTGTTGTTGTTGTTCTATGTTGTCGGTG
TTGCTGTTGCCAACTGTACATTGTCGCACCCTGACATACGTGGTACGTGG
TAAGTGCAGGACTTGACTGCCACGAGACTGGGTATTTACGAAGCAGAGCA
GCCTGACGTATGGGTTCGGGAACTTGACGTTGGCACGTGGGGCTCGTACC
GCCGAGCCATGACGGGGTGGCTGCGTGATTGGGTAGATGACGTAAGGAAA
GACGGATACATACGTACAGGCCAAGCGCTGGTGTTTTCCGATCCCACGCA
CTCTTTTGTGTGTACGTGTGGGGGGGTGGGGTGGTTTTGGTCAGTGAAGC
CCTGGCAGCAAATAACATCCCGGCCTGGTTGGGGTACAAGGATAGAATCA
GGCGACTCGTACTGCTGTGTTGCCTTGGTTTGTGATGTTTGATTCTTATT
ACTTCGAAGACTGTAGTTTTGTTCTGCTTGGCATCGTGTGTTCCGAGCGG
GAGTGATGGGTTCTCTTTCTTCTTGTGCTCGATGGCCCCTCTTCCTGTCT
CTATCGTCCTTTTTCCGCACTCGTTGGTCTCCTGGGGCTTCTTGTGATCT
GTTATGTTTCTTGTTGATTATTTTCAGCATATATAGTCTATGCACCATTT
TTGAGTGTGCACGTGTGTTTGTCCTTTGGCCACGGAAGAAGGCGTTCGCG
TCAGTTAGCGCCACGTACGGTTATTATTTATTGTGAAGGCAACAACAACA
ACATCGAGGCTCTGCGCTTTTCGGACGCCAATTGCTCAGATGGGCGTAGG
CCGGTTTGCACTGTCAGCTAGATAGACTATATATGCATACGCGGTTCACT
ACTACACAGACAGATGGTGACCCTCTTTGATTTTTTGCAAAGGATGACTG
GGTGATGTTTGTAGCTATGGGATTGCCCTCTGGCGTGCTGTATCAGGATC
TTCGCGTTGTGGGGGCATTAAATAAATGTGCGGCGTTTGATTGGTCTAGT
TTGGGTGGCCAAAGGTCTAGCAGATACCAATCGATGCGGCCCGCACTAAA
GAACTTGGCCATAAGCACATACTAAGTGATATTTTTTTTCTAATACGTAC
AGGTGCTTTGTCAAGAAGCCTACTCTTTTAGGGTTATTGTTAAACCGTGT
GTTTTTATTATTCCTTAAACCCTACATGTATTATTATGGTAAACATGTAG
TCGCCGTGGACAAAAAAAATAAGGATAAAGCTCCGGCAAATATAAGAGGT
CCCTAGCTCTCTTTGACAGCTCGGTATAATAATAGCTGTCTTTGACACAT
TTCCCTGACTGAGTTGCTTGCTTATTGAAGGTGTCGTTGTACAGTATCAC
GGCCGCGTGAGTCTAGATATCGGCCAGCGACAAATCATCAAATCATGCAC
CAGCTGCAGCCAGTTGCCTCGCTTCCCGGTGTTGCTGCGCGACGCTGGAA
ATGTGAGTCTTTTGAGCCCCCCTCGCCTGACGACCTCACTAACTTACTTA
CTC
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Coding sequence (CDS) from alignment at chr_28:4640..11892-

>Ec-28_000020.2 ID=Ec-28_000020.2|Name=Ec-28_000020.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=375bp|location=Sequence derived from alignment at chr_28:4640..11892- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGATATTGAACGTGGAGTACGCACGCCTCTGGACGGGTGTAGTGTA
TAGAGGTAAGGTAGCGTACCCCTTGAGAACGCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCGGTGGTTTCC
CAAAACCCGGAAATGGGGGGAACCCCCCCCCCCCCCCCCCCCCATAGTTT
TTTTGGTACAAAAAGAAAACCCCGTTTTTCCCCTTTTTTATATTGGGGGG
GGGGGGGGGGTTTTTTTCCCCCCCCTTGGGCCCCCAAAAGGGGAAAAAAA
AAAGAAAGTTTTTTGGCAATTTTAA
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Synonyms
The feature 'Ec-28_000020.2' has the following synonyms
Synonym
Esi0120_0002
Esi_0120_0002