Ec-27_007030.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_007030.1
Unique NameEc-27_007030.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length268
Homology
[Close]
BLAST of Ec-27_007030.1 vs. uniprot
Match: D7FY44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY44_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 8.910e-40
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:  184 KKQPGCHYQLRVPTLPGVSTSKNSARAQHDPFPMTGVSFWCTDEEGGNTSPADCTAEAGPLPPIN 378
            KKQPGCHYQLRVPTLPGVSTSKNSARAQHDPFPMTGVSFWCTDEEGGNTSPADCTAEAGPLPPIN
Sbjct:   51 KKQPGCHYQLRVPTLPGVSTSKNSARAQHDPFPMTGVSFWCTDEEGGNTSPADCTAEAGPLPPIN 115
[Close]
BLAST of Ec-27_007030.1 vs. uniprot
Match: A0A6H5K678_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K678_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 4.100e-39
Identity = 124/289 (42.91%), Postives = 153/289 (52.94%), Query Frame = 1 
Query:   58 PDPTGLRLSKVYRS------VKKSCSFCIKRKRYCDGFARXXXXXXXXKKQPGCHYQLR-VPT---LPGVSTSKNSARAQHDPFPMTGVSFWC---TDEEGGNTSPADCTAE----------AGPLPPINRSRLTASPATGLVGLQEDGYLMDFFDCLGFLSLASPSVIRTAMVGVM------FSAVKNPPSRIVSXXXXXXXXXXXXXXXXXXXXVE-EGTPWSAAITTGGGEGAPWPRDPSTCLMWCAIALGALVRGCPVEHVESYVDLAQESLATFRDQANLDTAR 834
            P  TG   SK  R       +KKSC FC KR++ CDG A+        K +P CHY +R +P+    P V  +     A  D  P  G+S       D +    + A  TA+           G + P  R+RL+ASPATGL GL E+  L DFF CLGFLSLA+ S+IR AMV VM             P+R   XXXXXXXXXXX         V  E   W  A+TT   E A  PRD STC++WCAIALGALVRG P+ HV+ YV LA+++LA+    A LD AR
Sbjct:   80 PSSTGNVPSKERRRHPQTIVLKKSCDFCFKRRKRCDGRAQRRCSFCIEKGRPECHYSMRSLPSKSKTPTVVPTSGEEDAVRDDSPSPGLSLRARAEVDNDANADTGAQHTAKKKGSGTAVGVTGLVLPFKRARLSASPATGLAGLLENELLGDFFGCLGFLSLATESIIRGAMVSVMRANNVLIQQGATTPARPXXXXXXXXXXXXXDTEETPVSSVRTEEACWRNAVTT---EDAALPRDASTCILWCAIALGALVRGYPLPHVQRYVHLAKDTLASCSASAALDMAR 365
[Close]
BLAST of Ec-27_007030.1 vs. uniprot
Match: D7FTD5_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD5_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.600e-30
Identity = 93/263 (35.36%), Postives = 119/263 (45.25%), Query Frame = 1 
Query:   76 RLSKVYRSVKKSCSFCIKRKRYCDGFARXXXXXXXXKKQPGCHYQLRVPTLPGV----------STSKNSARAQHDPFPMTGVSFWCTDEEGGNTSPADCTAEAGPLPPINRSRLTASPATGLVGLQEDGYLMDFFDCLGFLSLASPSVIRTAMVGVMFSAVKNPPSRIVSXXXXXXXXXXXXXXXXXXXXVEEGTPWSAAITTGGGEGAPWPRDPSTCLMWCAIALGALVRGCPVEHVESYVDLAQESLATFRDQANLDTAR 834
            +LS  Y    KSC  C +RKR CD   +        KK+P C Y+L+  T PG           S S         P     V+     E     +           P I R RL ASPATGLVG++E G+L DFF C G L L + S +R AMV +M  A + P  R                        E+G      +   G +    P   + C+MWCAIALGAL+RG PVEHVE YV+LA+ESLA   D  +++ AR
Sbjct:   35 QLSATY----KSCMLCARRKRACDS-RKPRCSYCIEKKRPYCFYRLKSATKPGAEGPPSLSSTFSASWGGVNTAMRPANPPRVASHGGVEVLATAADIWSMPTVPEYPSIKRCRLRASPATGLVGMKESGFLCDFFGCFGILPLTTESTVRNAMVEIMMGA-ELPRKRYNEEHLGVRTRWAEDEGEGE----EKGCSGDRTVVRRGTQ----PDHAAMCMMWCAIALGALMRGVPVEHVEMYVNLARESLAECFDGRSIEHAR 283
[Close]
BLAST of Ec-27_007030.1 vs. uniprot
Match: D7FTE0_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE0_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.290e-26
Identity = 97/273 (35.53%), Postives = 121/273 (44.32%), Query Frame = 1 
Query:   94 RSVKKSCSFCIKRKRYCDGFARXXXXXXXXKKQPGCHYQLRVPTLPGVSTSKNSARAQHDPFPMTGVSFWCTDEEGGNTSPADCTAEA---------GPLPPIN--------------RSRLTASPATGLVGLQEDGYLMDFFDCLGFLSLASPSVIRTAMVGVMFSAVKNPPSRIVSXXXXXXXXXXXXXXXXXXXXVEEGTPWSAAITTGGGEGA---PWPRDPSTCLMWCAIALGALVRGCPVEHVESYVDLAQESLATFRDQANLDTAR 834
            R   KSC+FC KRKR CD   R        KKQP CHY L+   LP  + +K +A  +      +  S        G+ S A   AEA         G L  +N              R RL++SPATGLVG+ E+G+L DFF C G L L + S +R AMV VM                                  +E   W      GGG  A     P  P+ C+MWCAIALGAL+RG  VEHV  YV LA +SL    D  +++ AR
Sbjct:   52 RQTYKSCTFCAKRKRACDS-QRPRCSLCIEKKQPYCHYPLKP--LPKRAAAKPAAARR---LSSSSPSSSDCSISSGDASKAKRLAEAQEGASYDTGGVLATVNTRSMPTVRGRMSLKRCRLSSSPATGLVGMPENGFLCDFFGCFGILPLTTESTVRNAMVEVMMRQCGG------------QAYSGTGGSGMEGLAEDEEKDWH-----GGGALARRHTLPDHPAKCMMWCAIALGALMRGISVEHVMGYVQLAWKSLTECFDGRSVEHAR 301
[Close]
BLAST of Ec-27_007030.1 vs. uniprot
Match: A0A6H5L0K0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K0_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.310e-26
Identity = 93/272 (34.19%), Postives = 120/272 (44.12%), Query Frame = 1 
Query:   94 RSVKKSCSFCIKRKRYCDGFARXXXXXXXXKKQPGCHYQLRVPTLPGVSTSKNSARAQHDPFPMTGVSFWCTDEEGG----------------NTSPADCTAEAGPLPPIN------RSRLTASPATGLVGLQEDGYLMDFFDCLGFLSLASPSVIRTAMVGVMFSAVKNPPSRIVSXXXXXXXXXXXXXXXXXXXXVEEGTPWSAAITTGGGEGA---PWPRDPSTCLMWCAIALGALVRGCPVEHVESYVDLAQESLATFRDQANLDTAR 834
            R   KSC+FC KRKR CD            K QP CHY L+ P L   +    +A               C+   G                  T     T +   +P +       R RL++SPATGLVG+ E+G+L DFF CLG L L + S +R AMV VM   ++    ++ S                     +E   W      GGG  A     P  P+ C+MWCAIALGAL+RG PVE V  YV LA+ESLA   D  +++ AR
Sbjct:   52 RQTYKSCTFCAKRKRACDSQKPRCRVLCIEKNQPHCHYPLK-PLLKRAAAKPTAAXXXXXXXXXXSD---CSISSGDASKAKRLAEAPEVASYGTGGVLATVDTRSMPTVRGRMSLKRCRLSSSPATGLVGMPENGFLCDFFGCLGILPLTTESTVRNAMVEVM---MRQCGGQVYSGTGGSGMEGLAE---------DEEKGWR-----GGGALARRHTLPDHPAKCMMWCAIALGALMRGVPVERVTGYVQLARESLADCFDGRSVEHAR 302
[Close]
BLAST of Ec-27_007030.1 vs. uniprot
Match: A0A6H5L0W7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W7_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.750e-26
Identity = 98/275 (35.64%), Postives = 121/275 (44.00%), Query Frame = 1 
Query:   94 RSVKKSCSFCIKRKRYCDGFARXXXXXXXXKKQPGCHYQLRVPTLPGVSTSKNSA--RAQHDPFPMTGVSFWCTDEEGGNTSPADCTAEAGPLPP-----------------------INRSRLTASPATGLVGLQEDGYLMDFFDCLGFLSLASPSVIRTAMVGVMFSAVKNPPSRIVSXXXXXXXXXXXXXXXXXXXXVEEGTPWSAAITTGGGEGA---PWPRDPSTCLMWCAIALGALVRGCPVEHVESYVDLAQESLATFRDQANLDTAR 834
            R   KSC+FC KRKR CD   R        K QP CHY L+   LP  + +K +A  R        +  S        G+ S A   AEA  +                         + R RL+ASPATGLVG+QE+G+L  FF CLG L L + S +R AMV VM                                  +E   W      GGG  A     P  P+ C+MWCAIALGAL+RG PVE V  YV LA+ESLA   D  +++ AR
Sbjct:   52 RHTYKSCTFCAKRKRSCDS-RRPRCSLCIEKNQPHCHYPLKP--LPKRAAAKPTAARRLXXXXXXXSDCSI-----SSGDASKAKRLAEAHEVASYGAGSVLATVDTRSMPTVRGRMSLKRCRLSASPATGLVGMQENGFLGAFFGCLGILPLTTESTVRNAMVEVMMRQCGG------------QAYSRTGGSGMEGLAEDEEKGWC-----GGGALARRHTLPDHPAKCMMWCAIALGALMRGVPVERVTGYVQLARESLADCFDGRSVEHAR 301
[Close]
BLAST of Ec-27_007030.1 vs. uniprot
Match: D8LCV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV1_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.190e-23
Identity = 62/148 (41.89%), Postives = 78/148 (52.70%), Query Frame = 1 
Query:  370 PINRSRLTASPATGLVGLQEDGYLMDFFDCLGFLSLASPSVIRTAMVGVMFSAVKNPPSRIVSXXXXXXXXXXXXXXXXXXXXVEEGTPWSAAITTGGGEGAP-----WPRDPSTCLMWCAIALGALVRGCPVEHVESYVDLAQESLA 798
            P  R RL+ASPATGLVG+QE+ +L DFF C+GFL L +PS IR  MV +M     +  S                         +EG  +  A+  GG          +P DPS C  WCA+ALGAL +G P+E V SY  LAQE+LA
Sbjct:    7 PFKRCRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRETMVTIMLPRASSQQS-------------------VFGDDCDEGGHYFEAVAPGGDLSKTSARNQFPMDPSACTFWCAVALGALAKGSPIESVTSYAQLAQEALA 135
[Close]
BLAST of Ec-27_007030.1 vs. uniprot
Match: D8LSE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE2_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.660e-23
Identity = 79/204 (38.73%), Postives = 100/204 (49.02%), Query Frame = 1 
Query:  217 VPTLPGVSTSKNSARAQHDPFPMTGVSFWCTDEEGGNTSPADCTAE--------------AGPLPPINRSRLTASPATGLVGLQEDGYLMDFFDCLGFLSLASPSVIRTAMVGVMFS--------AVKNPPSRIVSXXXXXXXXXXXXXXXXXXXXVEEGTPWSAAITTGGGEGAPWPRDPSTCLMWCAIALGALVRGCPVEHV 762
             PT+   S  +++ R   D  P TGVSFW    E  N + AD   +               G + P  R+R++ASPATGL GL E+  L +FF CLGFLSLA+ S++R AMV VM +        A      R  +                     EE   W  A+TT   E A  PRD STC++WCAIALGALVRG P+ HV
Sbjct:    5 TPTVVPASGEEDAVR---DDSPPTGVSFWA-GAEADNDANADTGTQPTAKKKGSETAVGVTGLVLPFKRARISASPATGLAGLLENELLGEFFGCLGFLSLATESIVRGAMVSVMRASNGLNQRGATTPARPRPATDGAWLVEEDDTEEAPASSVRTEEAC-WRKAVTT---EDAALPRDASTCILWCAIALGALVRGYPLPHV 200
[Close]
BLAST of Ec-27_007030.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 8.170e-23
Identity = 77/245 (31.43%), Postives = 110/245 (44.90%), Query Frame = 1 
Query:  100 VKKSCSFCIKRKRYCDGFARXXXXXXXXKKQPGCHYQLRVPTLPGVSTSKNSARAQHDPFPMTGVSFWCTDEEGGNTSPADCTAEAGPLPPINRSRLTASPATGLVGLQEDGYLMDFFDCLGFLSLASPSVIRTAMVGVMFSAVKNPPSRIVSXXXXXXXXXXXXXXXXXXXXVEEGTPWSAAITTGGGEGAPWPRDPSTCLMWCAIALGALVRGCPVEHVESYVDLAQESLATFRDQANLDTAR 834
            +++SC  C ++KR CDG A         +    C Y  R P  P   T     R    P  M           G          +A  + P+ R RL+ASPATGLVG+QE+ +L DFF C+GFL L +PS IR  MV +M   +   P ++ +                     E+G    + ++TG          PS C  WCA+ +GALV G PVE V +Y  LA+++L  +    N + A+
Sbjct:   18 MRRSCCECGRKKRKCDGMA---PCSRCLRSGVQCTYSKRKPHQP--QTQHQHQRRPRGPACMPSTELLRHSSSGA--------LQASGMLPLKRFRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRGEMVRMM--TLSTAPHQLGASYDSPEQCQFDAIL------TEDGITTGSQLSTG----------PSACTFWCAVGVGALVNGSPVELVGNYSGLARDALNAYTGPVNAEVAK 231
[Close]
BLAST of Ec-27_007030.1 vs. uniprot
Match: D8LCV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV4_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.510e-22
Identity = 61/148 (41.22%), Postives = 78/148 (52.70%), Query Frame = 1 
Query:  370 PINRSRLTASPATGLVGLQEDGYLMDFFDCLGFLSLASPSVIRTAMVGVMFSAVKNPPSRIVSXXXXXXXXXXXXXXXXXXXXVEEGTPWSAAITTGG-----GEGAPWPRDPSTCLMWCAIALGALVRGCPVEHVESYVDLAQESLA 798
            P  R RL+ASPATGLV +QE+ +L DFF C+GFL L +PS IR  MV +M     +  S                         ++   +  A+  GG       G+  P DPS C  WCA+ALGALV+G P+E V SY  LAQE+LA
Sbjct:    3 PFKRCRLSASPATGLVEMQENTFLSDFFGCIGFLPLTTPSQIRETMVKIMVPPASSQQS-------------------VFGDGSDKRGHYFEAVAPGGDLSKISAGSQLPMDPSACTFWCAVALGALVKGSPIESVTSYAQLAQEALA 131
The following BLAST results are available for this feature:
BLAST of Ec-27_007030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY44_ECTSI8.910e-40100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K678_9PHAE4.100e-3942.91Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7FTD5_ECTSI2.600e-3035.36Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7FTE0_ECTSI1.290e-2635.53Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5L0K0_9PHAE1.310e-2634.19Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L0W7_9PHAE1.750e-2635.64Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LCV1_ECTSI1.190e-2341.89Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D8LSE2_ECTSI1.660e-2338.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBJ1_9PHAE8.170e-2331.43Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LCV4_ECTSI1.510e-2241.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:6433251..6442000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length838
Hectar predicted targeting categoryother localisation
Gene idEc-27_007030.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_007030Ec-27_007030Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 6433251..6442000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_007030.1Ec-27_007030.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 6433285..6442000 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_007030.1.1Ec-27_007030.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6433251..6433421 +
Ec-27_007030.1.2Ec-27_007030.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6436034..6436243 +
Ec-27_007030.1.3Ec-27_007030.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6439613..6439720 +
Ec-27_007030.1.4Ec-27_007030.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6440487..6440757 +
Ec-27_007030.1.5Ec-27_007030.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6441327..6441400 +
Ec-27_007030.1.6Ec-27_007030.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6441997..6442000 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0070305UTR:Ec-27_007030.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_27 6433251..6433284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_007030.1CDS:Ec-27_007030.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 6433285..6433421 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_007030.1 ID=Ec-27_007030.1|Name=Ec-27_007030.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=268bp
MTNSWTGAPDPTGLRLSKVYRSVKKSCSFCIKRKRYCDGFARKRCSFCIA
KKQPGCHYQLRVPTLPGVSTSKNSARAQHDPFPMTGVSFWCTDEEGGNTS
PADCTAEAGPLPPINRSRLTASPATGLVGLQEDGYLMDFFDCLGFLSLAS
PSVIRTAMVGVMFSAVKNPPSRIVSSSSSMSSSSSSSSSSCTDDDVEEGT
PWSAAITTGGGEGAPWPRDPSTCLMWCAIALGALVRGCPVEHVESYVDLA
QESLATFRDQANLDTAR*
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spliced messenger RNA

>Ec-27_007030.1 ID=Ec-27_007030.1|Name=Ec-27_007030.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=838bp|location=Sequence derived from alignment at chr_27:6433251..6442000+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CGGCTTCATCGATTCATTGGTTGAGACGGGTGGCATGACGAATAGTTGGA
CGGGTGCACCGGACCCGACTGGGCTCCGCCTGTCCAAGGTCTACCGCTCG
GTGAAGAAAAGCTGCTCGTTCTGCATCAAGCGCAAGAGGTATTGCGACGG
GTTCGCGAGGAAACGCTGCAGCTTCTGCATCGCCAAGAAGCAGCCGGGAT
GCCACTACCAGCTGCGCGTGCCGACATTGCCCGGCGTGTCGACAAGCAAG
AATTCGGCACGTGCTCAACATGATCCCTTCCCTATGACGGGTGTAAGCTT
TTGGTGCACCGACGAAGAGGGGGGCAACACGTCCCCCGCCGACTGTACGG
CGGAGGCGGGCCCTCTCCCCCCAATCAACAGGAGCCGGCTGACTGCTTCC
CCTGCCACCGGCCTGGTGGGCCTTCAGGAGGACGGTTACCTCATGGACTT
CTTCGATTGTCTAGGGTTCCTCTCCCTCGCCAGCCCAAGCGTTATCCGGA
CAGCAATGGTTGGCGTCATGTTTTCTGCCGTCAAGAATCCTCCTTCAAGG
ATCGTATCATCATCGTCATCAATGTCCTCTTCGTCATCGTCTTCGTCATC
GTCTTGCACCGACGATGACGTCGAGGAGGGGACGCCGTGGTCTGCTGCTA
TAACCACGGGGGGGGGGGAAGGGGCGCCGTGGCCGCGCGACCCTTCGACG
TGCTTGATGTGGTGCGCGATCGCTCTGGGAGCCCTCGTACGAGGCTGCCC
CGTGGAGCACGTGGAGTCCTACGTAGACCTGGCACAGGAGTCGCTGGCGA
CCTTTAGGGACCAGGCCAACCTCGATACGGCTAGGTAA
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protein sequence of Ec-27_007030.1

>Ec-27_007030.1 ID=Ec-27_007030.1|Name=Ec-27_007030.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=268bp
MTNSWTGAPDPTGLRLSKVYRSVKKSCSFCIKRKRYCDGFARKRCSFCIA
KKQPGCHYQLRVPTLPGVSTSKNSARAQHDPFPMTGVSFWCTDEEGGNTS
PADCTAEAGPLPPINRSRLTASPATGLVGLQEDGYLMDFFDCLGFLSLAS
PSVIRTAMVGVMFSAVKNPPSRIVSSSSSMSSSSSSSSSSCTDDDVEEGT
PWSAAITTGGGEGAPWPRDPSTCLMWCAIALGALVRGCPVEHVESYVDLA
QESLATFRDQANLDTAR*
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mRNA from alignment at chr_27:6433251..6442000+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_007030.1 ID=Ec-27_007030.1|Name=Ec-27_007030.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=8750bp|location=Sequence derived from alignment at chr_27:6433251..6442000+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CGGCTTCATCGATTCATTGGTTGAGACGGGTGGCATGACGAATAGTTGGA
CGGGTGCACCGGACCCGACTGGGCTCCGCCTGTCCAAGGTCTACCGCTCG
GTGAAGAAAAGCTGCTCGTTCTGCATCAAGCGCAAGAGGTATTGCGACGG
GTTCGCGAGGAAACGCTGCAGGCAAGCAAATTACTTGTGTTCTTTATTTT
TTGGTACAACACGGGTCAGGCAGCCAGCGGCCTGTGAGGTCGGAGTAGTT
GCGGCGGTGTGTCATTCTTTTCTCGTGCTGTATGCATAGTAGGTGGGGAT
TGCATGCATTCGAAGCGGTGCTGGACACAGGCAGACCATGATAGCAAGCA
CGTGGTGTCAAACACAGCAGTTTCGTACATAGATAGCAACGACGCATGTA
TGACATGAGTATTTGTATCCTATAGACTAGAACACCTCGCCCCAAAGGCG
GACAATATTGAGGATGATCGTGGGTTGCTTTGTTTTTGTCCAGCCACTGC
TGGAAATTCGAAAACTCACAAGGTGCGGCGGGGGCCTCTGTTACGCGCTA
TGTATCCATCCATCCTTGCTTACTTCACTTGGCGCCTTCCTTCCTTCCTC
GCATCTGTCTATCTACATTCCACCCCTCCCGTCCCGTTGTGCATTCAATC
CCAATTTCGAATGTGACAATCAATCGGGATGTTCGTGGAACATGAAGTTT
ATGTATGGAGCTCTCCTTGCGTCATTTTCGGGTCATTTTCCAGACCGGAT
AATAGGATAATACATGTACGAAGTACACCAGACGGACACCACCACCAATC
ACTCTATTTTCCGTCTTGGAACAACGAAGACATGATGACGTGTAATTTGT
CGCCGGGAGGCGCGAGTACTTTGCCGAGCGCGTTGTCCGGTAGGTATCGT
TGGAGCCATTCACACCTTGAAGCGGTGCATACATATTTGTTTACGTTGGT
GGGTTCTAACGCTCGGTCGGGTGCCGATACGGCGGATTATTTCTGAAACT
TTCATAAAGAGCAACGTTCATCATACAGCGGTGTTCAGCGCAAGGGGTGG
GGTGTGCGTGGAAGTGTAGACGCCTGTGGTCGTAGTCATTGACGTTCTAC
AAGACGCTGCTGCTGGTGCACTTTCTTGTCCAAAGAGCACAAGACTCTCA
CTGCTCTTTTCATTCATCATTTGGAAACCGCGCTGGTGCGGGTGGCCACC
TCTCGCTAAAACGACCACAACCAACCGTGTAACGTCGGCCAATCGTCTTT
TTTTTGTTGATGATAACGAATTCATCTCTACCACTATTTATAATACCTAT
GGAAAAGAGTCTTATGCAAATGGTCAGCAATAATCCATAGCGTCAGCGAA
AGCTACCTGTATGTCATGTTTATTTTTTATTTTCTTGGTGTGTAGAACGT
GCGAATCAAATTATTTTGTTACGATTAGAAAACAAAACAAAACGAAGAGA
GCAGTGGTGGTGGGATGCAGCCCCGCGCGCCCTGGCGAACTTCCCTGCGG
CTCCCAGCCGTTGTACTTTCCTTCTCCCATGGATGAAAACGGAACAAAAT
CTCGCACTCATTCAGGAGAGTGCTCGACCGGCATATGAAAATGGCCAGTG
GAACATCTGTACATGAAAATAACACAATAATACTCCTCCTCCATTCATCC
TTCGCGTGCACGGCTTACTGTGTGTCAACCGAGTGCGGGTTGCATCGATA
TCCACATGGGGGGCGAGCGATTTACATCCAATCTGGCCCATGGTAAATCT
GTGTATCTGTATGTAGAGAGTAGCAGCAGACCGATCTTTGATCACCATAT
TTTTCACGAATGAATGTGGTACAGCACGCGGGGTGCTGACGACTTGGTCG
AGAGCAGTGGTTGACGGGAAATTTTCCGAGGAAACTTCCTGGCTACACCA
CCAGGGTTGTAATATATAGCCCGAGAATACGCTAGGAAGGTGGGTGGGGA
GGAGGCCCTAAGATTTACCCCGATGAACAAAGCGCTTCCTTTGGCAACCA
CTGGTTGCTGTTCGGACCGGGTGCGCTGTACGTTTTTTTATCGGCTTGAA
GCTATAGGATATTTTCGCTATCCCTAACCCCAACCCAACCGCCCAACCGA
CCCGACCCAAACCTTTTTTTTTTTATTGTCTTGACTTCAAATCAGCGCTC
ACAGCACTGCATAGTGCCGTTTGCTCCAACCCGCGGTCACACAAAAGAGC
CCCTCTCTACCCTCCCCTCCTGCGGTACTTTGCCTTCGATTTTTAATGCG
AGAAGAGTTCAGCACTCTCTTCCCTCTGTGTACACACGAACTAGCGCTAT
CTACTAGGCCAGGAGCGGAAGCGAGAGAAAAACCACTTTGCAAGAAACGC
TCGCTTACGCCGGGATTCGAACCCTTGACCTGACCTCTAGCAGGTTTCGA
GGATACCAACTAGACCACCGGGGCGACCTATGGCATTGATTGGAAAGTCC
CTGTGCCAAGCAAGCCTAGGCCGCGGCAAGACGCGGCAAGACGCGGCAAG
ACGCGGCGCTTTGTTGAGTCCTAGGTCACTGTACCAAACGACGCTAGGTT
GCTGCACGTTGAAAAAGCTAGGTTGCTGCACCGTTTTCGTTCAAGGTTTA
CAGCAGTGCACACGGCGCGCATTTTTTTTTCTGGGCCTCGTCATGTTACT
TATACCCCTCTCTTCGTTCGTCTCTTGGTGACGCACGAGCGCTACTCAAC
ACTCTGCACCTTTCGTTTTCGTCGCCTTGTACTATTAATGATAATAATTT
AATGTACCGACGTCCATGATGGTAATTCTGCAGCTTCTGCATCGCCAAGA
AGCAGCCGGGATGCCACTACCAGCTGCGCGTGCCGACATTGCCCGGCGTG
TCGACAAGCAAGAATTCGGCACGTGCTCAACATGATCCCTTCCCTATGAC
GGGTGTAAGCTTTTGGTGCACCGACGAAGAGGGGGGCAACACGTCCCCCG
CCGACTGTACGGCGGAGGCGGGCCCTCTCCCCCCAATCAACAGGTACGTA
CGTCGTGGGAACAGAGGAGGGTCGGTCCTCCGTAGCACTCCTAAGTTGTT
TCTGGCTGTTGTTATTGTTGTTGTCGTTGTCGTTGTCTTGACATTGAAAA
CCGTTCCGGTCTCAGCAGTATTAGTCTGCTGGTAATGTTATTTCTGTTTT
CCCTCCTCGCTCTCTGTCGTTCAGTCGCGAGGAAAGAAGGCGATTTCACG
AGTCGAGCCGTTTTTCGAGACTACTTAATCCTCGGCTGATATGCAGACGT
CGTTCGTATTCCGTACAGTAGGTGTAGACTGGTGCCAGAATAGAAAGAAA
GGACGAAAGCAAGAGAAGAAAAAAATAACTTGAGCTGAGAACGTGAGCAT
CTCTGGTTCCAGGTCGAAGCCTTCCGTACGTTAAATGTTCAACTTGATCG
ATCGTTGGGATTCCGCACCCACCCAACCGAGCGTCTCTTCAGCCCAAGCC
CTCCCTCTAGTCTGTTCGATCCGTTTGCGGGCCAACTCATCAATCCCCCC
GATGAGCCGGAGTTCACCTGGCAAAGGGCAGTTTGCAATGAATACTCGAT
CCTCGACTACATCCTGGTAGATAGGGGGAGCACACAGATCCCAGAGCTGC
ACGTAAGTGCGATAAATGTAGGTTCGACCGACCACTTCCTCATATGGGCA
AACATCGACCGATCTAGAAAGATGGAGAGTGAGAAACAGAGGAAAGTGTT
CCGGTGGAAAGTAGAGCGTTTGGGAGACGAGGGGACACGGGATGAATTCC
AGAAGGGACTGGCTGGTAGTGTAGAACCCTTCAGGCAACTGCTGAGAAGC
GTCGAAGACGGACAGGTAGACGTACAAGCAGCGGGGGATAAGGTGATTGA
AGGGTGGGAGTCCATAGTGAATACAACGGCAGACAGAGTAGTGGGAAAGG
TGGTACGATGTGGGGTATGACGTGCTGAAAGAAGAAATAGGGGAACGTAG
AGAAGTCTTCAAGCAGTACCTGAGTGAGGGGTCTGAGGAGAGTTGGGAAA
AGTACAGGGCCAAGAGAAAACAGGTCATGGGACTAGTGAAAAAGAAGAAA
AAGTGCATTTGGGACGAAGTAGTGCAGAAGGCCAACGGAGGCCTGGAGGG
GAACGTCAAGCAGATGTGGGAAGGGTTTAGTGAGATGGTAACAAAGACCG
CGCAGGGGGGGGATATAGGGGTAGCAACTTTGCGAGGCGTGAACGGTGAA
CTAGTCAGCAGTGGGAAGGGAAAACGGGAAGTTCTACATGTAGCAGGACA
CTACAAGAGACTTGGAGTGCCTTCGGAGAATGAAGCTATTGACCAAGTGT
TTAAGAAGAAGGTGGACGCATGGGCCCAGGAAGAAGAAGAACCATCGAAG
GCAGACGTTGGGAACATAGAACTAGAAAAGGAGTTCACTGAGGACGTGTG
TGAACGAACTGCAGTGCCACAAAGCAGTAGGGGCGGATGGGATAGTCAAT
GAGTTCATGAAGTTTGGTGGGAAGGGGATGACCCAGCTGGTGGTACTGCT
GTACAACTGGGTGTGGAGAAGCGAGTATGCGCCAAGTAGATGGAGGGAAG
GAGTAGTTGTGACCTTGTTTAAGAAAGGAGACAAGACTGACCCAGGAAAC
TACAGGGGGATCACACTGTTGAACACAGTAGGAAAAGTGTTCTCTATGCT
GCTGAACGATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCGTTAGTG
AGGGCCAGGCAGGTTTGAAGAGGGGGTGCGTAGACCACGCATTCACGGTA
GGGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAGGCCGACGTACTGCTT
CTTCGTGGACGTGAAAAAGGCATACGATACCGTATGGAGAATGGGCTGTG
GAAACAGTTGTCCAAGTACGGGATCAAGGGGAAAATGTGGAGAGTGCTGA
AGAAGATGACAGAGTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACTG
TCTAAATTCTTCGACATTGAACAGGGGGTCCCACAAGGTTGCACGCTGTC
CCCATTATTGTTCCAAGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGG
CAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACTTCGGTGTCAGGA
ATGCTGTTTGCGGATGATTTTGTTGGTATGTCGGACACCCCTGAGGGACA
GCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGT
CTGCCAACGTTGAGGGGAGTGCCGTCATAGTATGCAACGAGGACAGGGAG
GAACCAGTACAAAACAGATGGAAGTGGGGGGTCGACGAGATTGCCGTAGT
GGACCAGTACACATACCTCGGAGTAGAGGTCGCAAAAGACTGCTCGTGGA
ATGCACACATGCCCAAGGTAGCGGAAAAGGGCATAGCACGAGCAGGGAAG
CTGCACCCAATACTCGCAAACCGGCACCTCGATACACGCGTCAAATTGAC
GGTTTTGAAGAGCGTAATCGTACCGCCGCTAGTGTACGCCGGAGAAGTAT
GGGGAGGAAATAAGAACGTAGTGAAAGAACTGGAGGCGGCGCAGATGAAA
GCAGCGAAAATCATCCTAGGATTCTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNACCGGGAACATAGGCCTTCGAGAACGTCGACGAAGACAT
AGGACGGTAGACGACGAAGACGACAAGTTCAAATGTGATTGCGGCTTCGA
ATGCGAAGACCGTGTTCATGTAGTCGCGGAATGCCAGTTGTACGAAAAGG
AGAGGGAAGTGTACATGACTGAGCTGGGAAAAATACAAGGGAGGTACAGG
GAGATGTTTGAGGCATGGAATAGAGAGGAGAGGACGTTAGCTGTACTGGG
GCATAGGAAGTGGTTTGAAAAGGCGGGAAGGGATATCGGTAGGATATATA
GACTAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAGGAAGGAGCGA
TTGGCCATCGGTGATCGGTCCTGTGGGAACAATGGTCCGTCCTCTCGAGG
ACGTGTGGTCAATGGTCTAACCGCTAAGGCATGCAAAACATATGAGTCCG
CCGCCGCCCCCCGCCCCCCCGGTCGAAACTTGTATTTTTGTCATTCTACT
TGGATATAACAGGAGCCGGCTGACTGCTTCCCCTGCCACCGGCCTGGTGG
GCCTTCAGGAGGACGGTTACCTCATGGACTTCTTCGATTGTCTAGGGTTC
CTCTCCCTCGCCAGCCCAAGGTAGCAACATAGTGGTATACTAGATGTAAT
GTGCCGGCGGCGCTAAGCAAGAATAGGATGAATTCCGACAGACGCGGGAC
AGCACAGCAGGAGCATCGACTTAGTTGGGGGGCTAGCACCTCCTTCGAGA
CGTCTACGAAACCCACCGTAGTTCCAGAGCACGCTCACCCCCTGTTTTTG
CCGTGGCTAGAATTTGATGTTGCAAGTACACTCAAAAGCCTGATCGCTCC
CGGCATCTGTGCGGTAGAGTGCCATCATACGTGAACTTCATGAAGGAGGA
AAACAAATGGTACCTCCCCCCCCCCCCCCCCGACGCGGGGGCCAAGGGCT
AACAGCTAAGGGAAGCAAAAAAAAAGAGGACGCCCCCCCCCCCCCCCCCC
CCCCCCCCCCGGCCCGGGCGCCCCAGGGGAACCGGGCAACAAAGGGGGGC
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCCCTCTGCGGGGCTCCCGACGGGAAAAAATATGTTCACCATGTTACAT
GGTGGGGTGAGAGCGGACTAGCTTGATGTGTGTAACATCTAGGTTGTCCG
GAGGTCGTTTTTGTTATTATATTTTTCCCCCCCCCCCCCTGGAGGGGGTG
GTTAATGTTTTATCAGCTAAGACATGCAAAACATAAGAGCACGCCCCCCC
CTCCCCTCCCTCCCCTCCCTCGTTTTGCGCGCTCAGCGTTATCCGGACAG
CAATGGTTGGCGTCATGTTTTCTGCCGTCAAGAATCCTCCTTCAAGGATC
GTATCATCATCGTCATCAATGTCCTCTTCGTCATCGTCTTCGTCATCGTC
TTGCACCGACGATGACGTCGAGGAGGGGACGCCGTGGTCTGCTGCTATAA
CCACGGGGGGGGGGGAAGGGGCGCCGTGGCCGCGCGACCCTTCGACGTGC
TTGATGTGGTGCGCGATCGCTCTGGGAGCCCTCGTACGAGGCTGCCCCGT
GGAGCACGTGAGTGTGACGCGGATTCATTCTCAGCCCCCCCCCTCCCCCC
CCTGTTCACAGCTACGCTAGAAAGAGCGATGTTGTGTGTTCGGCGAGTGC
GCTCGATGGCTGCGCGGTCTCTACGACATTTAGCTTCCGTAAGACTTGAA
GGACGATAGATGGAAGGCGTTGGGGCTTACTGTGGTTGCGTAGTTCCAAT
TCGTTTGACATTGGAAGTGGTGTTGGATGGGGGTGATCGAGGTACAACCC
ATTGATCACAGCCTGTTTTTGACGTCGCACGTGGCTATTGGAATTACGAT
GACTGTGATCAGCATAATGTGATACTTGTACATATTTGTGGGAACCTGGT
GATGAAGTTGCCGGTTTTCCGCCCCTAATCTTTCCGCGAAGAAGAGGAGA
CCTCTACATGATCGATGATGACAAGATCCGAGCCTACACACCACACCTCT
TGCCTCCACCTTCTGTACCAACGAGCGTCTACCCCCCTCACCCCTTTCGT
CTTCTCCTTGGTTGTGGTTGTCACCGCCGCTGTTTTTTTTTTTTTTTTCG
CGCGCGGGTACTTCTGGTCGCAACAGGTGGAGTCCTACGTAGACCTGGCA
CAGGAGTCGCTGGCGACCTTTAGGGACCAGGCCAACCTCGATACGGCTAG
GTAAGATGAGAGGGTGGGGGGGGGGGGGGGGGGGGGTTCCTTTTTCGTTC
CAGGTTTGGTTTTTTTTTTTTTTGTGAATACCTGCAGCCCCTTCCATGGT
TCCCCCTTTTTCTTTCCCCATGTCCGGGCCCCCCCCTTTCCGGGCGAGGA
AATGTTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAACAAAAAATCCCCTCTTTTTTCAAAAAAAAAATTTTCCCTTTCCTCCC
ATCCCCCCCCAAAAAACCCCCCCCCTCCCTTTTGCCCCCCCATACCCCTT
TTCGCCCCCCCCCCCCCCCCCCCCCCCCTCCGACCGTCCGCCCCAGGTAA
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Coding sequence (CDS) from alignment at chr_27:6433251..6442000+

>Ec-27_007030.1 ID=Ec-27_007030.1|Name=Ec-27_007030.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=804bp|location=Sequence derived from alignment at chr_27:6433251..6442000+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACGAATAGTTGGACGGGTGCACCGGACCCGACTGGGCTCCGCCTGTC
CAAGGTCTACCGCTCGGTGAAGAAAAGCTGCTCGTTCTGCATCAAGCGCA
AGAGGTATTGCGACGGGTTCGCGAGGAAACGCTGCAGCTTCTGCATCGCC
AAGAAGCAGCCGGGATGCCACTACCAGCTGCGCGTGCCGACATTGCCCGG
CGTGTCGACAAGCAAGAATTCGGCACGTGCTCAACATGATCCCTTCCCTA
TGACGGGTGTAAGCTTTTGGTGCACCGACGAAGAGGGGGGCAACACGTCC
CCCGCCGACTGTACGGCGGAGGCGGGCCCTCTCCCCCCAATCAACAGGAG
CCGGCTGACTGCTTCCCCTGCCACCGGCCTGGTGGGCCTTCAGGAGGACG
GTTACCTCATGGACTTCTTCGATTGTCTAGGGTTCCTCTCCCTCGCCAGC
CCAAGCGTTATCCGGACAGCAATGGTTGGCGTCATGTTTTCTGCCGTCAA
GAATCCTCCTTCAAGGATCGTATCATCATCGTCATCAATGTCCTCTTCGT
CATCGTCTTCGTCATCGTCTTGCACCGACGATGACGTCGAGGAGGGGACG
CCGTGGTCTGCTGCTATAACCACGGGGGGGGGGGAAGGGGCGCCGTGGCC
GCGCGACCCTTCGACGTGCTTGATGTGGTGCGCGATCGCTCTGGGAGCCC
TCGTACGAGGCTGCCCCGTGGAGCACGTGGAGTCCTACGTAGACCTGGCA
CAGGAGTCGCTGGCGACCTTTAGGGACCAGGCCAACCTCGATACGGCTAG
GTAA
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Synonyms
The feature 'Ec-27_007030.1' has the following synonyms
Synonym
Esi0339_0034
Esi_0339_0034