Ec-27_007000.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_007000.1
Unique NameEc-27_007000.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length257
Homology
[Close]
BLAST of Ec-27_007000.1 vs. uniprot
Match: D7FY40_ECTSI (GTP cyclohydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY40_ECTSI)

HSP 1 Score: 474 bits (1221), Expect = 2.330e-163
Identity = 255/256 (99.61%), Postives = 255/256 (99.61%), Query Frame = 1 
Query:   70 MLPANNAATSTAXXXXXXRNGAAGPAASPSKGKGAVNGAAEAGPGLKRRRSAPDVRAEEMRRALADDDEGRLDKMQKACSTLLECLGEDVSREGLVKTPSRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEASHMCMVMRGVQKQGATTMTSSVNGCFQADSRTRAEFFSLIGLDR 837
            MLPANNAATSTAXXXXX RNGAAGPAASPSKGKGAVNGAAEAGPGLKRRRSAPDVRAEEMRRALADDDEGRLDKMQKACSTLLECLGEDVSREGLVKTPSRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEASHMCMVMRGVQKQGATTMTSSVNGCFQADSRTRAEFFSLIGLDR
Sbjct:    1 MLPANNAATSTAXXXXXPRNGAAGPAASPSKGKGAVNGAAEAGPGLKRRRSAPDVRAEEMRRALADDDEGRLDKMQKACSTLLECLGEDVSREGLVKTPSRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEASHMCMVMRGVQKQGATTMTSSVNGCFQADSRTRAEFFSLIGLDR 256
[Close]
BLAST of Ec-27_007000.1 vs. uniprot
Match: A0A835YJ24_9STRA (GTP cyclohydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ24_9STRA)

HSP 1 Score: 293 bits (750), Expect = 1.440e-92
Identity = 143/195 (73.33%), Postives = 169/195 (86.67%), Query Frame = 1 
Query:  253 RALADDDEGRLDKMQKACSTLLECLGEDVSREGLVKTPSRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEASHMCMVMRGVQKQGATTMTSSVNGCFQADSRTRAEFFSLIGLDR 837
            R  +  +E RL  M  A STLL C+GED +REGLV+TP RMA+ALL CT+GY + L D++N A+FEE HHEMILVKDI+++S+CEHH+VPF G+ HIAYIPRSK++GLSKLARIADMYA+RLQVQERLT+QIAEAI EA++PLGVGVVVEA+HMCMVMRGVQK GATT+TSSV GCFQAD RTRAEFFSLIGL +
Sbjct:   46 RRSSQTEEERLATMTAAVSTLLTCMGEDPTREGLVRTPYRMARALLDCTKGYEKRLDDVINGAIFEEHHHEMILVKDIDVYSMCEHHLVPFYGRAHIAYIPRSKVLGLSKLARIADMYAQRLQVQERLTKQIAEAIYEAINPLGVGVVVEATHMCMVMRGVQKSGATTVTSSVLGCFQADPRTRAEFFSLIGLSK 240
[Close]
BLAST of Ec-27_007000.1 vs. uniprot
Match: A0A448YXU5_9STRA (GTP cyclohydrolase 1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YXU5_9STRA)

HSP 1 Score: 273 bits (698), Expect = 2.790e-84
Identity = 129/182 (70.88%), Postives = 158/182 (86.81%), Query Frame = 1 
Query:  280 RLDKMQKACSTLLECLGEDVSREGLVKTPSRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEASHMCMVMRGVQKQGATTMTSSVNGCFQADSRTRAEFFSLI 825
            +L+KMQ AC T+LEC+GED SREGL+KTP R AKAL+  T+GY+Q+  ++ N AVF EDH EM++V++I IHSLCEHHMVPFTG++HI YIP  K+IGLSKLARIA+++ARRLQVQERLT QIA+AI EAV+PLGV VVVE SHMCMVMRGVQK+G +T TSSV GCFQ++S+TRAEFFS+I
Sbjct:   87 QLEKMQDACKTILECIGEDPSREGLLKTPLRWAKALMFMTKGYAQTCQEVTNNAVFSEDHDEMVVVRNISIHSLCEHHMVPFTGRIHIGYIPNGKVIGLSKLARIAEVFARRLQVQERLTSQIADAIVEAVEPLGVAVVVECSHMCMVMRGVQKEGTSTATSSVRGCFQSNSKTRAEFFSII 268
[Close]
BLAST of Ec-27_007000.1 vs. uniprot
Match: A0A0P1B1V7_PLAHL (GTP cyclohydrolase 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B1V7_PLAHL)

HSP 1 Score: 270 bits (691), Expect = 1.140e-83
Identity = 128/186 (68.82%), Postives = 163/186 (87.63%), Query Frame = 1 
Query:  268 DDEGRLDKMQKACSTLLECLGEDVSREGLVKTPSRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEASHMCMVMRGVQKQGATTMTSSVNGCFQADSRTRAEFFSLI 825
            DD+ +L+KM  A +TLLEC+GED  REGLVKTP RMAKALL  T+GYSQSL+D++NEAVFEEDH EM++V+DI+++S+CEHHMVPFTGKVHI YIP  K++GLSKLAR++++++RRLQVQERLT+QIA AI   ++P GV VV+EA+HMCMVMRGV+K GA+T+TSSV G F++DSRTR+EF SLI
Sbjct:   58 DDKAKLEKMAAAVTTLLECIGEDPHREGLVKTPMRMAKALLYNTKGYSQSLADVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKVLGLSKLARVSEVFSRRLQVQERLTKQIATAIMGVIEPKGVAVVIEATHMCMVMRGVEKSGASTVTSSVLGVFKSDSRTRSEFMSLI 243
[Close]
BLAST of Ec-27_007000.1 vs. uniprot
Match: A0A7S0PWZ8_9STRA (GTP cyclohydrolase 1 n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PWZ8_9STRA)

HSP 1 Score: 270 bits (691), Expect = 1.700e-83
Identity = 127/182 (69.78%), Postives = 160/182 (87.91%), Query Frame = 1 
Query:  280 RLDKMQKACSTLLECLGEDVSREGLVKTPSRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEASHMCMVMRGVQKQGATTMTSSVNGCFQADSRTRAEFFSLI 825
            ++ KM  AC T+LEC+GED  REGLVKTPSR AKALL  T+GY+Q+ +++ N+A+F EDH EM++V+DI IHSLCEHHMVPF GKVHI YIP  KIIGLSKLARIA++Y+RRLQVQERLT+QIA+AI +AV+PLGV V++E+SH+CMVMRGVQK G++T+TSSV GCF+A+S+TRAEFFS+I
Sbjct:   73 KMTKMMGACHTILECIGEDPKREGLVKTPSRWAKALLFMTKGYAQTCAEVCNDAIFSEDHDEMVVVRDIAIHSLCEHHMVPFMGKVHIGYIPNGKIIGLSKLARIAEIYSRRLQVQERLTKQIADAIVDAVEPLGVAVMIESSHLCMVMRGVQKVGSSTVTSSVRGCFKANSKTRAEFFSII 254
[Close]
BLAST of Ec-27_007000.1 vs. uniprot
Match: A0A6U4KYV2_9STRA (GTP cyclohydrolase 1 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KYV2_9STRA)

HSP 1 Score: 268 bits (685), Expect = 3.270e-83
Identity = 128/187 (68.45%), Postives = 159/187 (85.03%), Query Frame = 1 
Query:  271 DEGRLDKMQKACSTLLECLGEDVSREGLVKTPSRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEASHMCMVMRGVQKQGATTMTSSVNGCFQADSRTRAEFFSLIGL 831
            +E R+ +M  A  T+LEC+GED  REGL KTP R AKA+    +GY+Q+L+D+V +AVF E H EM+LVKDI+++SLCEHH+VPFTGKVHIAYIPR+ ++GLSKLAR+A+MYARRLQVQERLT QI +A++EAV+PLGVGVVVE  H CM MRGVQK GA+T+TSSV GCFQ+D+RTRAEFFSL+GL
Sbjct:   26 EEERMKRMAGAFRTILECVGEDPDREGLAKTPMRAAKAMKFFCKGYNQTLADVVGDAVFHEGHSEMVLVKDIDLYSLCEHHLVPFTGKVHIAYIPRADVVGLSKLARVAEMYARRLQVQERLTYQICQAVQEAVNPLGVGVVVECQHFCMCMRGVQKPGASTITSSVLGCFQSDARTRAEFFSLVGL 212
[Close]
BLAST of Ec-27_007000.1 vs. uniprot
Match: A0A1V9ZNG1_9STRA (GTP cyclohydrolase 1 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZNG1_9STRA)

HSP 1 Score: 266 bits (679), Expect = 2.400e-82
Identity = 124/186 (66.67%), Postives = 159/186 (85.48%), Query Frame = 1 
Query:  268 DDEGRLDKMQKACSTLLECLGEDVSREGLVKTPSRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEASHMCMVMRGVQKQGATTMTSSVNGCFQADSRTRAEFFSLI 825
            +D+ +L+KM  A   LLEC+GEDV REGL+KTP RMAKALL CT+GY+Q+L D++N+AVF ED+ EM++V+DIE++SLCEHHMVPF GKVHI YIP  K++GLSKLARI+D++ARRLQVQERLT +IA+ + +A+  LGVGVV+EA+HMCM MRGV+K GA+T+TSSV GCFQ+D RTRAEF S +
Sbjct:   25 NDKKKLEKMAAAVKVLLECIGEDVDREGLIKTPMRMAKALLYCTKGYTQTLEDVLNDAVFTEDYSEMVIVRDIELYSLCEHHMVPFVGKVHIGYIPNGKVLGLSKLARISDVFARRLQVQERLTIEIAQGLMKAIGALGVGVVIEATHMCMTMRGVEKSGASTVTSSVLGCFQSDPRTRAEFMSHV 210
[Close]
BLAST of Ec-27_007000.1 vs. uniprot
Match: D0NDK8_PHYIT (GTP cyclohydrolase 1 n=13 Tax=Phytophthora TaxID=4783 RepID=D0NDK8_PHYIT)

HSP 1 Score: 266 bits (681), Expect = 3.530e-82
Identity = 126/186 (67.74%), Postives = 161/186 (86.56%), Query Frame = 1 
Query:  268 DDEGRLDKMQKACSTLLECLGEDVSREGLVKTPSRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEASHMCMVMRGVQKQGATTMTSSVNGCFQADSRTRAEFFSLI 825
            +D+ +L+KM  A +TLLEC+GED  REGLVKTP RMAKALL  T+GY QSLSD++NEAVFEEDH EM++V+DI+++S+CEHHMVPFTGKVHI YIP  K++GLSKLAR++++++RRLQVQERLT+QIA AI   ++P GV VV+EA+HMCMVMRGV+K GA+T+TSSV G F++D RTR+EF SLI
Sbjct:   58 EDKEKLEKMAAAVTTLLECIGEDPQREGLVKTPMRMAKALLYNTKGYGQSLSDVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKVLGLSKLARVSEVFSRRLQVQERLTKQIANAIMGVIEPKGVAVVIEATHMCMVMRGVEKSGASTVTSSVLGVFKSDPRTRSEFMSLI 243
[Close]
BLAST of Ec-27_007000.1 vs. uniprot
Match: F0WAZ1_9STRA (GTP cyclohydrolase 1 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WAZ1_9STRA)

HSP 1 Score: 266 bits (681), Expect = 5.990e-82
Identity = 127/182 (69.78%), Postives = 157/182 (86.26%), Query Frame = 1 
Query:  280 RLDKMQKACSTLLECLGEDVSREGLVKTPSRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEASHMCMVMRGVQKQGATTMTSSVNGCFQADSRTRAEFFSLI 825
            +L+KM  A  TLLEC+GEDV REGL KTP RMAKALL  T+GYSQSLS ++N+AVFEEDH EM++V+DI+++SLCEHH+VPF GKVHI YIP  K++GLSKLAR++D++ARRLQVQERLT+QIA+AI   + P GVGVV+EA+HMCMVMRGV+K GA+T+TSSV GCF+ D RTR+EF SLI
Sbjct:   78 KLNKMADAVKTLLECMGEDVEREGLRKTPLRMAKALLYNTKGYSQSLSQVLNQAVFEEDHDEMVIVRDIDLYSLCEHHVVPFIGKVHIGYIPNGKVLGLSKLARVSDVFARRLQVQERLTKQIAQAIMGVIQPRGVGVVIEATHMCMVMRGVEKSGASTVTSSVLGCFKTDPRTRSEFMSLI 259
[Close]
BLAST of Ec-27_007000.1 vs. uniprot
Match: A0A484DTW1_BRELC (GTP cyclohydrolase 1 n=2 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTW1_BRELC)

HSP 1 Score: 266 bits (679), Expect = 8.000e-82
Identity = 126/187 (67.38%), Postives = 161/187 (86.10%), Query Frame = 1 
Query:  265 DDDEGRLDKMQKACSTLLECLGEDVSREGLVKTPSRMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMVPFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREAVDPLGVGVVVEASHMCMVMRGVQKQGATTMTSSVNGCFQADSRTRAEFFSLI 825
            D D+ +L+KM  A  TLLEC+GED +REGLVKTP RMAKALL  T+GY Q+L+D++NEAVFEEDH EM++V+DI+++S+CEHHMVPFTGKVHI YIP  K++GLSKLAR+++++ARRLQVQERLT+QIA AI   ++P GV VV+EA+HMCMVMRGV+K GA+T+TSSV G F++D RTR+EF SLI
Sbjct:   61 DKDQEKLEKMAGAVITLLECIGEDPTREGLVKTPMRMAKALLYNTKGYGQTLADVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKVLGLSKLARVSEVFARRLQVQERLTKQIANAIMGVIEPKGVAVVIEATHMCMVMRGVEKSGASTVTSSVLGVFKSDPRTRSEFMSLI 247
The following BLAST results are available for this feature:
BLAST of Ec-27_007000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY40_ECTSI2.330e-16399.61GTP cyclohydrolase 1 n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YJ24_9STRA1.440e-9273.33GTP cyclohydrolase 1 n=1 Tax=Tribonema minus TaxID... [more]
A0A448YXU5_9STRA2.790e-8470.88GTP cyclohydrolase 1 n=1 Tax=Pseudo-nitzschia mult... [more]
A0A0P1B1V7_PLAHL1.140e-8368.82GTP cyclohydrolase 1 n=1 Tax=Plasmopara halstedii ... [more]
A0A7S0PWZ8_9STRA1.700e-8369.78GTP cyclohydrolase 1 n=1 Tax=Asterionellopsis glac... [more]
A0A6U4KYV2_9STRA3.270e-8368.45GTP cyclohydrolase 1 n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1V9ZNG1_9STRA2.400e-8266.67GTP cyclohydrolase 1 n=4 Tax=Saprolegniaceae TaxID... [more]
D0NDK8_PHYIT3.530e-8267.74GTP cyclohydrolase 1 n=13 Tax=Phytophthora TaxID=4... [more]
F0WAZ1_9STRA5.990e-8269.78GTP cyclohydrolase 1 n=1 Tax=Albugo laibachii Nc14... [more]
A0A484DTW1_BRELC8.000e-8267.38GTP cyclohydrolase 1 n=2 Tax=Bremia lactucae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:6396239..6400923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score478.0
Seed ortholog evalue2.7e-132
Seed eggNOG ortholog2880.D7FY40
Preferred nameGCH1
Length1757
KEGG rclassRC00263,RC00294,RC00323,RC00945,RC01188
KEGG koko:K01495
KEGG ReactionR00428,R04639,R05046,R05048
KEGG Pathwayko00790,ko01100,map00790,map01100
KEGG ModuleM00126,M00841,M00842,M00843
Hectar predicted targeting categoryother localisation
Gene idEc-27_007000.1
GOsGO:0000166,GO:0000278,GO:0001505,GO:0001882,GO:0001883,GO:0002027,GO:0002164,GO:0002165,GO:0002168,GO:0002237,GO:0002376,GO:0003008,GO:0003013,GO:0003018,GO:0003674,GO:0003824,GO:0003924,GO:0003933,GO:0003934,GO:0005488,GO:0005509,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005829,GO:0006066,GO:0006082,GO:0006520,GO:0006570,GO:0006575,GO:0006582,GO:0006584,GO:0006585,GO:0006725,GO:0006728,GO:0006729,GO:0006732,GO:0006760,GO:0006766,GO:0006767,GO:0006807,GO:0006809,GO:0006950,GO:0006952,GO:0006955,GO:0006979,GO:0007049,GO:0007275,GO:0007389,GO:0007591,GO:0008015,GO:0008016,GO:0008150,GO:0008152,GO:0008217,GO:0008270,GO:0008277,GO:0008363,GO:0009058,GO:0009072,GO:0009108,GO:0009110,GO:0009396,GO:0009605,GO:0009607,GO:0009617,GO:0009712,GO:0009713,GO:0009790,GO:0009791,GO:0009880,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009987,GO:0010033,GO:0010460,GO:0010632,GO:0010646,GO:0012505,GO:0014916,GO:0016020,GO:0016043,GO:0016053,GO:0016462,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0018958,GO:0019001,GO:0019222,GO:0019238,GO:0019438,GO:0019748,GO:0019751,GO:0019752,GO:0019889,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0023051,GO:0030234,GO:0030334,GO:0030742,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0031410,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032496,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032768,GO:0032770,GO:0032879,GO:0032991,GO:0033301,GO:0033555,GO:0033993,GO:0034097,GO:0034311,GO:0034312,GO:0034341,GO:0034612,GO:0034641,GO:0035150,GO:0035185,GO:0035296,GO:0035639,GO:0036094,GO:0040003,GO:0040012,GO:0042133,GO:0042136,GO:0042221,GO:0042303,GO:0042311,GO:0042335,GO:0042337,GO:0042364,GO:0042398,GO:0042416,GO:0042417,GO:0042423,GO:0042438,GO:0042440,GO:0042558,GO:0042559,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043085,GO:0043095,GO:0043167,GO:0043168,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043473,GO:0043603,GO:0043604,GO:0043648,GO:0043650,GO:0043933,GO:0044057,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044306,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044550,GO:0045087,GO:0045428,GO:0045429,GO:0045448,GO:0045776,GO:0045823,GO:0046146,GO:0046148,GO:0046165,GO:0046173,GO:0046189,GO:0046209,GO:0046394,GO:0046483,GO:0046655,GO:0046656,GO:0046872,GO:0046914,GO:0046983,GO:0048037,GO:0048066,GO:0048067,GO:0048069,GO:0048072,GO:0048265,GO:0048518,GO:0048522,GO:0048583,GO:0048856,GO:0050662,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050877,GO:0050880,GO:0050884,GO:0050896,GO:0050905,GO:0050999,GO:0051000,GO:0051019,GO:0051066,GO:0051171,GO:0051173,GO:0051186,GO:0051188,GO:0051239,GO:0051240,GO:0051259,GO:0051260,GO:0051270,GO:0051291,GO:0051336,GO:0051341,GO:0051353,GO:0051704,GO:0051707,GO:0051716,GO:0060308,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071396,GO:0071704,GO:0071840,GO:0072593,GO:0080134,GO:0080135,GO:0090066,GO:0090322,GO:0097159,GO:0097164,GO:0097367,GO:0097458,GO:0097708,GO:0097746,GO:0097755,GO:0098772,GO:0120025,GO:0120038,GO:1900407,GO:1901031,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901615,GO:1901617,GO:1901700,GO:1901701,GO:1902882,GO:1903409,GO:1903426,GO:1903428,GO:1903522,GO:1903524,GO:1904407,GO:1905627,GO:2000026,GO:2000121,GO:2000145,GO:2000274,GO:2000377,GO:2000379,GO:2001057
EggNOG free text desc.7,8-dihydroneopterin 3'-triphosphate biosynthetic process
EggNOG OGsCOG0302@1,KOG2698@2759
EC3.5.4.16
COG Functional cat.H
BiGG ReactioniMM904.YGR267C,iND750.YGR267C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_007000Ec-27_007000Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 6396239..6400923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_007000.1Ec-27_007000.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 6397154..6400562 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_007000.1.4Ec-27_007000.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6396239..6397286 -
Ec-27_007000.1.3Ec-27_007000.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6398102..6398244 -
Ec-27_007000.1.2Ec-27_007000.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6400068..6400580 -
Ec-27_007000.1.1Ec-27_007000.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6400871..6400923 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0070003UTR:Ec-27_007000.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_27 6396239..6397153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_007000.1CDS:Ec-27_007000.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 6397154..6397286 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0070005UTR:Ec-27_007000.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_27 6400563..6400580 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_007000.1 ID=Ec-27_007000.1|Name=Ec-27_007000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=257bp
MLPANNAATSTAAAAAPPRNGAAGPAASPSKGKGAVNGAAEAGPGLKRRR
SAPDVRAEEMRRALADDDEGRLDKMQKACSTLLECLGEDVSREGLVKTPS
RMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMV
PFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREA
VDPLGVGVVVEASHMCMVMRGVQKQGATTMTSSVNGCFQADSRTRAEFFS
LIGLDR*
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spliced messenger RNA

>Ec-27_007000.1 ID=Ec-27_007000.1|Name=Ec-27_007000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1757bp|location=Sequence derived from alignment at chr_27:6396239..6400923- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TACCCGCAGGGGAGATGTCCCTATATGCTGTCTGGGAAACCGTAGACATA
CAGGACAAGATATACGTACACATGTTGCCCGCAAATAACGCCGCTACATC
AACCGCAGCAGCAGCAGCGCCGCCCAGAAACGGCGCTGCTGGCCCCGCGG
CTTCCCCATCAAAAGGCAAGGGCGCGGTTAACGGCGCAGCGGAAGCAGGG
CCTGGGTTGAAGCGCAGGCGCAGCGCGCCCGACGTTCGCGCGGAAGAGAT
GCGACGTGCGCTGGCGGACGACGACGAGGGTCGACTGGACAAGATGCAGA
AGGCCTGCTCCACTCTGCTGGAATGCCTTGGGGAGGACGTATCAAGGGAG
GGCTTGGTCAAGACTCCCTCGAGGATGGCCAAGGCCTTGCTGGCGTGCAC
CCGGGGGTACAGCCAGAGCCTGTCCGACATCGTGAACGAGGCCGTGTTCG
AAGAGGACCACCATGAGATGATCCTCGTCAAGGACATCGAGATACACAGC
TTGTGCGAGCACCACATGGTTCCGTTCACTGGAAAGGTTCACATCGCCTA
CATCCCCCGATCAAAGATCATCGGCTTGAGCAAGCTGGCTCGAATCGCGG
ACATGTACGCGCGCCGGCTGCAGGTGCAAGAGAGGTTGACGCGTCAGATC
GCGGAAGCCATTCGAGAGGCGGTCGACCCGTTGGGAGTGGGGGTGGTCGT
CGAGGCATCACACATGTGCATGGTCATGCGAGGCGTGCAGAAGCAGGGGG
CAACCACCATGACCAGCAGCGTGAACGGCTGCTTCCAGGCGGATTCTAGA
ACAAGGGCCGAGTTTTTCAGCTTGATCGGGCTCGACCGATAGTGCGCGGG
CTAACCTAAACCGTGTGGTATCTAGCAGGGCAGAAGGTGTTGATCTTTCG
CTACATTCTAGACCCTCTCAGGCACGCCTTTTTTGTTTTGAGGCAAGAGG
TTTCCATCTTGTCGACATGGAACCTTTCTTTGCACGCCTTTGTTTATTTT
GGGCAAGAGTTTTCCATCTTGTCCACATGGAGCCTTAGCCTTTCTATGAA
AGGGGGGTCATTTGTTTTGGGAACATGTAAGCATGTTCTTGGGCGCAAGT
TAATCCGAAACCTAAGGTAGGATCAGTTTGGCTTCTACCCCATCGCCACT
AGTGGGCGACTCGAGGGAGGGTGACATGCATGGGGTCTTGTACCGGAACA
AAAGCTTTTCAACCTCAACGGTCAAGTCATTAGGGAGGCAGTGTCATCCG
GCCTGAATTGCGAAGGCGCAATAGTCAGCAAGAGACTCACCTCTCGTCTC
AACAGCGGGTAGAGTGGGTACGATATGGTCAACCATGAGCGACGAGCGCA
GACGCCCATGTTTGGCAACGGCGGTTGTCTAGCAGTGGACATGGTTCGAA
TTTGCACCAGACGTATGTACGGTAGATACAAAGGTTTCCCGTTCAGCACG
CCTGGGGAGAGGAATTCTGTCAACATGCATCTCACTTGTAAAAACGGTTT
CATTCGTCAGGTTTGACAAAGAAAATGATTGGGAATTTCTCGGCCCCCCT
GAGGGAAGAGGGGCCATATTGTGTGTTTGTTTCACGTGGGCCAGCTGCGC
TTTGGAGTATCAATTTCACGGCGAGGCGGAGGCTCAGCTTGATCGTTTTG
CTTTGCCCCACGAGGCACACGCAACAAGCACCAGGTATATATCACTTCTT
AAGCATGCGGAGGAAAGCGAGGGAATTGGAAAAGCCTGGAAAATTACCCC
GGGCGGG
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protein sequence of Ec-27_007000.1

>Ec-27_007000.1 ID=Ec-27_007000.1|Name=Ec-27_007000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=257bp
MLPANNAATSTAAAAAPPRNGAAGPAASPSKGKGAVNGAAEAGPGLKRRR
SAPDVRAEEMRRALADDDEGRLDKMQKACSTLLECLGEDVSREGLVKTPS
RMAKALLACTRGYSQSLSDIVNEAVFEEDHHEMILVKDIEIHSLCEHHMV
PFTGKVHIAYIPRSKIIGLSKLARIADMYARRLQVQERLTRQIAEAIREA
VDPLGVGVVVEASHMCMVMRGVQKQGATTMTSSVNGCFQADSRTRAEFFS
LIGLDR*
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mRNA from alignment at chr_27:6396239..6400923-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_007000.1 ID=Ec-27_007000.1|Name=Ec-27_007000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4685bp|location=Sequence derived from alignment at chr_27:6396239..6400923- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TACCCGCAGGGGAGATGTCCCTATATGCTGTCTGGGAAACCGTAGACATA
CAGGTACTTTCTGACGCTATGAATTTATTGCTAATCTGTCTCAGACTCTT
TTCTATGATAGAGATGGATTCGTTGTGTCAGATTTATTTAGAAAAAAAAA
ATGCGGCGTGATTTCGCGCGAGCTCGAGCCGAAGGCGGCCGGAAGAGGTG
TCGCCGACAGACCAATCATGACCGCCGTGAGCTCGAGAATCCCGCATTTA
CGCACTCAGCCGTAAAATTGCAACGCAGTCCTTGCCCAGCAGCCGACATT
CCCCACCCCTCTCGCCTCCTGTGGTCGCCAACTCGTCGCCCAGGACAAGA
TATACGTACACATGTTGCCCGCAAATAACGCCGCTACATCAACCGCAGCA
GCAGCAGCGCCGCCCAGAAACGGCGCTGCTGGCCCCGCGGCTTCCCCATC
AAAAGGCAAGGGCGCGGTTAACGGCGCAGCGGAAGCAGGGCCTGGGTTGA
AGCGCAGGCGCAGCGCGCCCGACGTTCGCGCGGAAGAGATGCGACGTGCG
CTGGCGGACGACGACGAGGGTCGACTGGACAAGATGCAGAAGGCCTGCTC
CACTCTGCTGGAATGCCTTGGGGAGGACGTATCAAGGGAGGGCTTGGTCA
AGACTCCCTCGAGGATGGCCAAGGCCTTGCTGGCGTGCACCCGGGGGTAC
AGCCAGAGCCTGTCCGACATCGTGAACGAGGCCGTGTTCGAAGAGGACCA
CCATGAGATGATCCTCGTCAAGGACATCGAGATACACAGCTTGTGCGAGC
ACCACATGGTTCCGTTCACTGGAAAGGTTCACATCGCCTACATCCCCCGA
TCAAAGGCAAGTACAATGTACATACGTACCTCTATAGGTAGCACAAGATG
CCACACCTGTGTGGTGACATTTTTGGAGGTTCAAGAAGTATCACACGGGT
GTGGTGTTGTGAAGGGGGTGTGATATCTTGTGTGACCAGTGTCATAAACT
GCACTCACAGGACTCCATCCCACACGGGGGGGTTGACAAGAAGGGGGCGT
GATAAAGATGGGTTGTGATCATTTTCAATTTTCACCCATGGGATGAATTG
AGCCCACCTGACCCCACCTGCAGATGATAAGGAAGGGGTGCAATAATGTC
ACCCGTGGGGTGAAGTGCGCCCACACGACCCAAACCCACAGCGGTATATA
TTTGTGTTTTTTTTTTGTTTTTTCCAGGGACGGTTGCATGAATGTTGCAT
TGTTCAAGCCCGCTCATCTTGCACGTAATACGTCGCCAGTGGCGCATCCT
TCTCGATGTACAGCGCGACGCAAAACAGGAGCGCGTATGCAGCAGCTCTG
CACTAATCCAATCAATATCCATGTGTGCCACGTCAGCACCATCAGGTAAG
ATAAAACTGCACACACACACATACACACTATTGTGTCTTTGATCCGGAGA
ATAGGTTAGTCTCCCCCATGCCGCCCCCTCACGGGGTCCCAGTTAATGGC
ATTTAGAAGTGTTTTGTTCTTGGTTTTCACCCGCACTGAGACCGACGTCT
TTTCATTGGTCAGCCGGTTTGCGCGGTTGATGCTTATAATAAAAACACAC
ACACAAACAAAGCGTGCTCTTGTGCTCTTCTTGTGGACATTCAACCACGA
CCCCCCCCTTTTTTTTGTCATGACTTAAAAATCAGCGCCCACAGTATTTG
TGCCGTTTACTCCAACCCGTGGTCACACACCGAAGGGTCCCTCTCCCTGA
GGCCCCCAACCCAACTCTCTTGCGGTGCTTTGCCTCATATTTTTATTTGA
AGTGCAGCACCCTCTTCCCTCTGTGTACACACGAACAATGAGTGGGCGCT
TTCGCTTTCCACCAAGACCAGAAACAGAAGCTCGCTTACGCCGGGATTCG
AACCCCTGATCCTGCCCACGACAAGGTTTTCGAGGATACCAATTGAACTA
CCGGGGCGACCGGTTCCATGAGTGCAACAAATACCGCTAGAGTAAAGCAG
TGGAGGTCCCTGTAGAATACATAATTTACATCAGAGGTCCTTCTTTAGTG
TCGAGTGTGCGCAGAAAATTCACCATTTACCGGCACTACTGCGTAGAGTG
CCTGGATAGCCCTAAACTGGCACTGTTCGGGGACGAAAAAACCCTCAACC
GGCGCTGTTGAGAGCTTTGGCTGTGCGCACTGAGAATTGGCCGGCATTGG
GCTAAAGTATACCGGCAACCAGCACTGGTGTTCAACCAGCACTATTTATA
GACACGTCTATTTTACCCGCCGCCCAACATCTTCCCAACATCCTCCTCTA
GACCTCCCAAGCGTAACGTAGGGGCTTGTGTTTGCCTTTATCTCGGCTCT
ACCGTGGAATGATTATGTGGTGCTGAGCAACTTTTGCCGTCTCGTGCCTC
CTCTGTTGACGCGGCATTTTTTGGTGTCAAACTTGGAGAGGGTAGATCCA
AATAGACGGAAACACAAAGACACGCAGGAAAGTACAAAGGAGCACAAAAA
ATGGACCAACTCTCTAATAAAACGCGGGACGCAGCAAAAGACCCAAACGC
GGTGTATGTCACATGCATCTTTTTCGTATTTAGCGTATGTGTACGTCATG
TCTGCCGCCCAAGTTCCGCTGTTTGTGTTCGGTGCTGACACGCTCGCTCT
CTCCTTCGCCGTCCGTCCGTGTACCGAAGATCATCGGCTTGAGCAAGCTG
GCTCGAATCGCGGACATGTACGCGCGCCGGCTGCAGGTGCAAGAGAGGTT
GACGCGTCAGATCGCGGAAGCCATTCGAGAGGCGGTCGACCCGTTGGGAG
TGGGGGTGGTCGTCGAGGCATCGTGAGTCGTGCTGCGTTTCTCCGCGTTA
CATGGGTGTTGCCGTGTCGGGTATGCATGGATGTGTTATGGTTTGGATTG
GATGGGTGGGCTGTTCCTACTGTCTGAGGAGATTGATGCACTGGTCTCTT
AAAAGCTTAGGTACATGACGAAGTTTTTTATGGTAGGGTTCGGGTTTGGC
CGGGCGGGTTGTTCTTTTTTGCAGTGCCGTCGACGAAAAAAATTGCCGGG
GAAAGGTAAAGGTACACATGGCGTGAAAAAGTCGTTCTCTCAGTTTCCTT
TGTACTTTCACCCTCTACCCCCCGGATGGAGTACTGTACACCGTAAGAGT
CAATCAAATCGTGAGATGGCTTTGGGAAACAAGTGTTCGGAATCCGTCAC
CGGGTTGCAGCGCCGGTGACTCTCCGTGTGACTCTCCGATGTTCTTGACT
CCACTACCATTTTTTTTTGCGTCTGCTCGTTTCTGTGAAGCTGCTGTCGT
GTTTTCGCGTTTTCCCCCGCTCGCCAACTCTACAATACGCCGGAGTCAAC
CCGCCATGCCTAATGTTGCTTGCTGGGGGGACCCCAATGGACTAATCTAG
GAATAAGCAACTGCTGTGATGTTTTGATACGACTGCAGCATTCCTCACTC
GCAACACACGCAACACACGACCCCGATCTATCTGGGGGCAGAGAGACTGC
TGTCACGTACGAATCTAGCCCCCCGCTTTTCTACGATATATGTCCCACGG
CCAATACACCAATTTTTTACCCGTCGTCCCGAACGCTACTTTTTTTTTTT
TCGTGCCTGCACCTGGTGATGAAAAAAATCTTGTCAGACACATGTGCATG
GTCATGCGAGGCGTGCAGAAGCAGGGGGCAACCACCATGACCAGCAGCGT
GAACGGCTGCTTCCAGGCGGATTCTAGAACAAGGGCCGAGTTTTTCAGCT
TGATCGGGCTCGACCGATAGTGCGCGGGCTAACCTAAACCGTGTGGTATC
TAGCAGGGCAGAAGGTGTTGATCTTTCGCTACATTCTAGACCCTCTCAGG
CACGCCTTTTTTGTTTTGAGGCAAGAGGTTTCCATCTTGTCGACATGGAA
CCTTTCTTTGCACGCCTTTGTTTATTTTGGGCAAGAGTTTTCCATCTTGT
CCACATGGAGCCTTAGCCTTTCTATGAAAGGGGGGTCATTTGTTTTGGGA
ACATGTAAGCATGTTCTTGGGCGCAAGTTAATCCGAAACCTAAGGTAGGA
TCAGTTTGGCTTCTACCCCATCGCCACTAGTGGGCGACTCGAGGGAGGGT
GACATGCATGGGGTCTTGTACCGGAACAAAAGCTTTTCAACCTCAACGGT
CAAGTCATTAGGGAGGCAGTGTCATCCGGCCTGAATTGCGAAGGCGCAAT
AGTCAGCAAGAGACTCACCTCTCGTCTCAACAGCGGGTAGAGTGGGTACG
ATATGGTCAACCATGAGCGACGAGCGCAGACGCCCATGTTTGGCAACGGC
GGTTGTCTAGCAGTGGACATGGTTCGAATTTGCACCAGACGTATGTACGG
TAGATACAAAGGTTTCCCGTTCAGCACGCCTGGGGAGAGGAATTCTGTCA
ACATGCATCTCACTTGTAAAAACGGTTTCATTCGTCAGGTTTGACAAAGA
AAATGATTGGGAATTTCTCGGCCCCCCTGAGGGAAGAGGGGCCATATTGT
GTGTTTGTTTCACGTGGGCCAGCTGCGCTTTGGAGTATCAATTTCACGGC
GAGGCGGAGGCTCAGCTTGATCGTTTTGCTTTGCCCCACGAGGCACACGC
AACAAGCACCAGGTATATATCACTTCTTAAGCATGCGGAGGAAAGCGAGG
GAATTGGAAAAGCCTGGAAAATTACCCCGGGCGGG
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Coding sequence (CDS) from alignment at chr_27:6396239..6400923-

>Ec-27_007000.1 ID=Ec-27_007000.1|Name=Ec-27_007000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=771bp|location=Sequence derived from alignment at chr_27:6396239..6400923- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTGCCCGCAAATAACGCCGCTACATCAACCGCAGCAGCAGCAGCGCC
GCCCAGAAACGGCGCTGCTGGCCCCGCGGCTTCCCCATCAAAAGGCAAGG
GCGCGGTTAACGGCGCAGCGGAAGCAGGGCCTGGGTTGAAGCGCAGGCGC
AGCGCGCCCGACGTTCGCGCGGAAGAGATGCGACGTGCGCTGGCGGACGA
CGACGAGGGTCGACTGGACAAGATGCAGAAGGCCTGCTCCACTCTGCTGG
AATGCCTTGGGGAGGACGTATCAAGGGAGGGCTTGGTCAAGACTCCCTCG
AGGATGGCCAAGGCCTTGCTGGCGTGCACCCGGGGGTACAGCCAGAGCCT
GTCCGACATCGTGAACGAGGCCGTGTTCGAAGAGGACCACCATGAGATGA
TCCTCGTCAAGGACATCGAGATACACAGCTTGTGCGAGCACCACATGGTT
CCGTTCACTGGAAAGGTTCACATCGCCTACATCCCCCGATCAAAGATCAT
CGGCTTGAGCAAGCTGGCTCGAATCGCGGACATGTACGCGCGCCGGCTGC
AGGTGCAAGAGAGGTTGACGCGTCAGATCGCGGAAGCCATTCGAGAGGCG
GTCGACCCGTTGGGAGTGGGGGTGGTCGTCGAGGCATCACACATGTGCAT
GGTCATGCGAGGCGTGCAGAAGCAGGGGGCAACCACCATGACCAGCAGCG
TGAACGGCTGCTTCCAGGCGGATTCTAGAACAAGGGCCGAGTTTTTCAGC
TTGATCGGGCTCGACCGATAG
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Synonyms
The feature 'Ec-27_007000.1' has the following synonyms
Synonym
Esi0339_0028
Esi_0339_0028