Ec-27_006980.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006980.2
Unique NameEc-27_006980.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length179
Homology
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BLAST of Ec-27_006980.2 vs. uniprot
Match: D7FY37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY37_ECTSI)

HSP 1 Score: 330 bits (846), Expect = 2.330e-94
Identity = 165/167 (98.80%), Postives = 167/167 (100.00%), Query Frame = 3 
Query:  267 ILQDLFGGEGVLVKMATAPTEPIRIRTKGLAVRVTTVDKHDIYHISDVDMTTSEASPRPLMTITSTMKEIIQFAPFVEHPVLVRRKSGLIAEGNGSDIPAEPSNRQQQPSHARSGRFITISADLPDYPEGHLDASAGLLLASSQPSPPNTVSLDEQTAGMLHVLLAC 767
            ++QDLFGGEGVLVKMATAPTEPIRIRTKGLAVRVTTVDKHDIYHISDVDMTTSEASPRPLMTITSTMKEIIQFAPFVEHPVLVRRKSGLIAEGNGSDIPAEPSNRQQQPSHARSGRFITISADLPDYPEGHLDASAGLLLASSQPSPPNTVSLDEQTAGMLHVLLAC
Sbjct:  535 VVQDLFGGEGVLVKMATAPTEPIRIRTKGLAVRVTTVDKHDIYHISDVDMTTSEASPRPLMTITSTMKEIIQFAPFVEHPVLVRRKSGLIAEGNGSDIPAEPSNRQQQPSHARSGRFITISADLPDYPEGHLDASAGLLLASSQPSPPNTVSLDEQTAGMLHVLLAC 701
[Close]
BLAST of Ec-27_006980.2 vs. uniprot
Match: A0A6H5KTR2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTR2_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 1.670e-74
Identity = 140/150 (93.33%), Postives = 145/150 (96.67%), Query Frame = 3 
Query:  267 ILQDLFGGEGVLVKMATAPTEPIRIRTKGLAVRVTTVDKHDIYHISDVDMTTSEASPRPLMTITSTMKEIIQFAPFVEHPVLVRRKSGLIAEGNGSDIPAEPSNRQQQPSHARSGRFITISADLPDYPEGHLDASAGLLLASSQPSPPNT 716
            ++QDLFGGEGVLVKMATAPTEPIRIRTKGLAVRVTTVDKHDIYHISDVDMTT EASPRPLMTIT+TMKEIIQFAPFVEHPVLVRRKSGLIA+GNGS IPAEPS RQQQPS ARSGRFITISA+LPDYPE HLDASAGLLLASSQPSPPNT
Sbjct:  718 VVQDLFGGEGVLVKMATAPTEPIRIRTKGLAVRVTTVDKHDIYHISDVDMTTCEASPRPLMTITTTMKEIIQFAPFVEHPVLVRRKSGLIAQGNGSVIPAEPSKRQQQPSQARSGRFITISAELPDYPEAHLDASAGLLLASSQPSPPNT 867
[Close]
BLAST of Ec-27_006980.2 vs. uniprot
Match: D7FY38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY38_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 6.550e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 
Query: 2704 EEQLHPLVSVKVNANLHGAAAAVASPADSEDASSVTSSQASANSRSSSILRRRPSVFNAPPPLPTPSAWERGGDSSE 2934
            EEQLHPLVSVKVNANLHGAAAAVASPADSEDASSVTSSQASANSRSSSILRRRPSVFNAPPPLPTPSAWERGGDSSE
Sbjct:   14 EEQLHPLVSVKVNANLHGAAAAVASPADSEDASSVTSSQASANSRSSSILRRRPSVFNAPPPLPTPSAWERGGDSSE 90
[Close]
BLAST of Ec-27_006980.2 vs. uniprot
Match: A0A6H5JMD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMD3_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.280e-17
Identity = 52/79 (65.82%), Postives = 57/79 (72.15%), Query Frame = -2 
Query: 1599 CSGAAAPVPLLRC-----RCGQS*HDQNRPAPSVHALVAVLPSRFLAFSLVALKVLGLKILAPKGQLAHSARHHLSPPP 1820
            CSGAAAPVPLLRC             +  P   VHALVAVL SRFLAFSLVAL++LGL+I+A KGQ A SARHHLSPPP
Sbjct:    5 CSGAAAPVPLLRCCFSGAAVASPSTTKLDPLRFVHALVAVLSSRFLAFSLVALRILGLQIVAFKGQPAQSARHHLSPPP 83
[Close]
BLAST of Ec-27_006980.2 vs. uniprot
Match: A0A6H5J7Q0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Q0_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.600e-17
Identity = 56/88 (63.64%), Postives = 61/88 (69.32%), Query Frame = -3 
Query: 1601 APLLDAAAPVPLLRCRCSGAAA--------ASPSTTKIDPLRPYTLSLLSFPVGSSLSPSLHLRFLV*KFSRRRVN*PTQLVTTCPLL 1840
            AP  DA   V LLRCRCSGAAA        A P++T+      YTLSLLS PVGSSLSPSLHL FLV +FSRRR+N P QLV TCPLL
Sbjct:    5 APRFDA---VRLLRCRCSGAAAPVPLWPVLARPNSTRSAS---YTLSLLSIPVGSSLSPSLHLGFLVRRFSRRRINQPKQLVNTCPLL 86
[Close]
BLAST of Ec-27_006980.2 vs. uniprot
Match: A0A6H5LQD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQD8_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.630e-17
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 2 
Query: 1433 VQMRGPHGRRCRQQCPSQFCARRQTPSERWTGTMYTALGLLEGAVLSQ 1576
            V+MRGP GRR RQQCPS  CARRQT SERWTGTMYTALGLLEGAVLSQ
Sbjct:    2 VKMRGPPGRRRRQQCPSHLCARRQTSSERWTGTMYTALGLLEGAVLSQ 49
[Close]
BLAST of Ec-27_006980.2 vs. uniprot
Match: A0A6H5L5E3_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E3_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 7.660e-15
Identity = 36/41 (87.80%), Postives = 36/41 (87.80%), Query Frame = 1 
Query: 1474 MSISVLCAEADAIRKVDGHYVHGPRFARGSCTVSVTWLRHQ 1596
            M IS LCAEAD IRKVDGHYVHGPRFARGSCTVSVTW  HQ
Sbjct:    1 MPISSLCAEADVIRKVDGHYVHGPRFARGSCTVSVTWFCHQ 41
[Close]
BLAST of Ec-27_006980.2 vs. uniprot
Match: A0A6H5KV64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV64_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.690e-14
Identity = 60/124 (48.39%), Postives = 69/124 (55.65%), Query Frame = 3 
Query: 1602 RRGQVVTS*VG*LTLRRENFQTKNLKCNEGESEEPTGKDSNESVY---------GRSGSILVVLGLAAAAPEQRXXXXXXXXXXXXXXAGAHGRRRTVT--HGRTF--CVVKYIPFFFLNIGVY 1934
            RRGQ+VTS +G LTLRRENF TKN  CNEGESEEPTG DSNESVY          R+G      G   AAPEQR                 +  RRT +  + RT   CVV+ + F FLN GV+
Sbjct:   43 RRGQMVTSRLGWLTLRRENFLTKNPMCNEGESEEPTGMDSNESVYEAERVEFGRARTGHS----GTGGAAPEQR-----------------NRSRRTASNRYARTSISCVVQLL-FRFLNTGVW 144
[Close]
BLAST of Ec-27_006980.2 vs. uniprot
Match: A0A6H5JVG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG2_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.810e-14
Identity = 53/112 (47.32%), Postives = 58/112 (51.79%), Query Frame = 3 
Query: 1608 GQVVTS*VG*LTLRRENFQTKNLKCNEGESEEPTGKDSNESVY---------GRSGSILVVLGLAAAAPEQRXXXXXXXXXXXXXXAGAHGRRRTVTHGRTFCVVKYIPFFF 1916
            G V    VG LTLRREN QT+N KCNEGESEEPT KDSNESVY          R+G      G  AAAPEQR              A   G R  ++     C+V Y PFFF
Sbjct:    2 GTVPPFFVGWLTLRRENLQTENPKCNEGESEEPTEKDSNESVYEAERVEFGRARTGHS----GTGAAAPEQRHRSMRT--------ASNRGARTNIS-----CIVNYFPFFF 96
[Close]
BLAST of Ec-27_006980.2 vs. uniprot
Match: A0A6H5JRJ0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ0_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.500e-12
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 2 
Query: 1601 EEGTGGDELSGLVDPSAREFSDQEP*VQRGRKRGTDWEGQQR 1726
            EEGTGGDEL GLVDPSAR+F  QEP VQRGRKRGTDWEGQQR
Sbjct:    5 EEGTGGDELIGLVDPSARQFLVQEPKVQRGRKRGTDWEGQQR 46
The following BLAST results are available for this feature:
BLAST of Ec-27_006980.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY37_ECTSI2.330e-9498.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTR2_9PHAE1.670e-7493.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FY38_ECTSI6.550e-36100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMD3_9PHAE1.280e-1765.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7Q0_9PHAE1.600e-1763.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LQD8_9PHAE3.630e-1787.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5E3_9PHAE7.660e-1587.80Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV64_9PHAE1.690e-1448.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVG2_9PHAE6.810e-1447.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRJ0_9PHAE1.500e-1288.10Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:6382870..6389195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score332.0
Seed ortholog evalue1.7e-88
Seed eggNOG ortholog2880.D7FY37
Length4238
Hectar predicted targeting categoryother localisation
Gene idEc-27_006980.2
EggNOG OGs2EA2X@1,2SGCE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006980Ec-27_006980Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 6372888..6389195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006980.2Ec-27_006980.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 6383104..6385728 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006980.2.1Ec-27_006980.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6382870..6383220 +
Ec-27_006980.2.2Ec-27_006980.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6383561..6383734 +
Ec-27_006980.2.3Ec-27_006980.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6384328..6384416 +
Ec-27_006980.2.4Ec-27_006980.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6385572..6389195 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0069805UTR:Ec-27_006980.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_27 6382870..6383103 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006980.2CDS:Ec-27_006980.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 6383104..6383220 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0069803UTR:Ec-27_006980.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_27 6385729..6389195 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006980.2 ID=Ec-27_006980.2|Name=Ec-27_006980.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=179bp
MLEYCLNIYCTILQDLFGGEGVLVKMATAPTEPIRIRTKGLAVRVTTVDK
HDIYHISDVDMTTSEASPRPLMTITSTMKEIIQFAPFVEHPVLVRRKSGL
IAEGNGSDIPAEPSNRQQQPSHARSGRFITISADLPDYPEGHLDASAGLL
LASSQPSPPNTVSLDEQTAGMLHVLLAC*
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spliced messenger RNA

>Ec-27_006980.2 ID=Ec-27_006980.2|Name=Ec-27_006980.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4238bp|location=Sequence derived from alignment at chr_27:6382870..6389195+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTCTTGTTTGTAGCG
AGAAACGCGGTGTGTTTGGTAAGAGAACGGTTGACAGGTGCAAATATGAG
CTTCTTCGAATAGTTCCTTAGCACTGCTGTGACCTGTACCGTCCGCTGCT
GCTGCTGCTCGCTCTGCTACACCAGATACGCACCGGGGTTGTCGTTCGTC
TGTCTTATGAAATACCCTGTACTTTGATTCAATCATGCTTGAATATTGCT
TGAATATTTATTGTACAATACTGCAGGATTTGTTCGGCGGGGAAGGTGTG
CTAGTGAAGATGGCCACGGCACCCACCGAGCCAATCAGGATTCGCACCAA
GGGTCTGGCGGTGAGAGTGACGACGGTGGACAAGCACGACATCTACCACA
TCTCCGACGTAGACATGACCACATCCGAAGCCTCGCCCCGGCCTCTGATG
ACCATCACCAGCACCATGAAGGAGATTATCCAGTTCGCACCGTTTGTTGA
GCATCCGGTGCTCGTGCGGCGTAAGTCCGGGCTGATCGCCGAAGGGAATG
GTTCGGACATCCCTGCGGAACCCTCAAACAGGCAGCAGCAGCCTTCGCAC
GCCAGGAGTGGAAGGTTCATTACGATATCAGCGGACCTTCCCGACTACCC
AGAGGGCCACCTAGACGCCTCTGCGGGACTGCTGCTGGCCTCATCCCAGC
CATCTCCTCCCAACACGGTGAGCCTAGACGAACAAACGGCTGGAATGCTA
CATGTGCTGCTGGCATGCTGAACAGAGGAAATGATGCCCCTCTCGCCCTC
GAGTGTTGTCTGTTGTTGTTCGTAATAATGATGATGATAATGATTTGCCT
TGTAGTTTGGTTTTGTTGTCATTGTTGTAGCTGTTGGTTGATGATGATGG
TGGGCTAGGGTTGTTCTGTCTGTTGTTAGGGGGTTGTTTGGGTTTTCGAT
AGCGTAATGCACAGTGCTTGACTTATCGGGAGTCGTCCTTCGTTGCACTT
AACGGCCACTTAACCCAGCACCGTTTGATTCTTCACATGTACAAGCCAGC
CCCCCCCCCCCCCCCCATTTTTTTTGCACAAGTATTTTATTCCACTTTCT
ACACAATAAAGTGTGCGGCTTACTCAAGGGCACTCACTACCTCTCTCTCT
GAGCCATTCCCTCTCTTCTTCCATTGTAAAGTACCATGATACATAGGCAA
TAGATAAGACTGTACCGGATATCTAATCTTGCTCTACTAGTCTTCGTTCT
TCCCCTCGCTGCCTCGGCAAGGCTTTTGCTTAGGCATGGCCCATAGCGAG
GGGGGGGGGTCGTTCTAGCGAGCATGGGTTAGACTCACCCTCAAAGGACC
GATACCTTCTTGCTGCGGCGCACCCGCCGCGAGGCGTGCGTAGTGGTAGA
GTTGGGGTCGGCACTGGTGCGCGTCAGGTACAAAGTGCAGATGCGCGGGC
CTCATGGCCGTCGGTGTAGACAGCAATGTCCATCTCAGTTTTGTGCGCGG
AGGCAGACGCCATCAGAAAGGTGGACGGGCACTATGTACACGGCCCTAGG
TTTGCTAGAGGGAGCTGTACTGTCTCAGTAACCTGGCTTCGCCATCAATG
GGGAGGAGGGGACAGGTGGTGACGAGCTGAGTGGGCTAGTTGACCCTTCG
GCGCGAGAATTTTCAGACCAAGAACCTTAAGTGCAACGAGGGAGAAAGCG
AGGAACCGACTGGGAAGGACAGCAACGAGAGCGTGTACGGACGGAGCGGG
TCGATTTTGGTCGTGCTAGGACTGGCCGCAGCGGCACCGGAGCAGCGGCA
CCGGAGCAGCGGCACCGGAGCAGCGGCATCGAGCAACGGCGCCGGAGCAC
ACGGACGACGTCGAACCGTGACGCACGGACGAACATTTTGTGTTGTCAAA
TATATTCCGTTTTTTTTCCTGAACATTGGTGTGTATGTGACGACGTCACG
GGCTTTGTAGAGAGACGCGGCAGAGATGGCGCGGATAGCCCGGGTGACTT
TTTTGTGTACCTGCATCGTGGAAGACCCCTTCAATGTGGAATGATTTCTA
GTCAGTGTCGATTATTTACACTGCTGTGTCCAACACAGATGATCAGGGGT
AGATTCGGTGATTGTCAATTGCAATGATGGCTTTGGTTGGTTGTTCTTTT
TCACTGTAAATTTATGCCCACGGACGCATTCTGACAGCACTTCAGACAGC
AGTTGCGCGCCCCGAACTTGTGCCATGCCTACCATGGTGTTAATTGTACA
GACAGCACTCCAGACAGCTGTAGTCGACAGTCGACATTCATTTTGGTAAA
GTGTAGGACAGGGGGGGTGATGCTGCTGTAGTCGAATGTAGTGTGTGGAC
GGGTAGTTCAGTTTTTGGGCACGCAAACGTGCTGCAGGGATGTAGGTGTA
CCTCTTCGGGCTTGTGTACCCTTTTCTTGCTAGTTTGCGTGTTCTTTGGA
TCTTCTGATGGCTCTAGCATTTTTGTGACCACGGACCGCGTCTTTGCTAG
ATTTTGGGATTAGCAACTGACACGAGTTAAATGTGAAGACAACAACAACA
ACAACAACTCGCGCCTCTTGATGTCTTTTTTAAGGAATATTCGTACAAGA
AAAATACTACCCGTTGGAAATAACCATAGCTCTCAGTCGTTTTTTGTCAT
CCTCTCTTAGAACCCTGCCGCTGCACTCGCTGTCCGCTCTTGTCTTGGAT
GACAGGAGGAACAACTACACCCGCTGGTGTCGGTAAAGGTTAACGCCAAC
CTCCACGGCGCTGCCGCAGCAGTCGCCTCACCCGCAGACAGCGAGGACGC
TAGCAGCGTCACGTCCAGCCAGGCGTCCGCAAACAGCCGGAGCAGCAGCA
TCCTCCGCAGGCGGCCGTCGGTGTTCAACGCGCCGCCGCCGTTGCCGACG
CCCTCCGCCTGGGAGCGGGGAGGAGATAGTTCCGAGTCCGAACCAGACAC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAAGAACCTTATCCTGTCGAGCGAGTTTCA
ACCAGCGATGGGGAGGGGAGTGAGGGGGAGGGGGGGGCGGGGGTTAGACC
CTAACGGCCCCGGAGAATACGGTAGGCGGTGTTTTCTCCGTGTCTTCTAG
CGTCCCCGAGTACAGCATGCATGGATATTTTGTGGGTGATTGAGGGGGTT
CTTGCTTGCGCCTACGGCCGATAACGTTGTGCGTGCGTTCTGGACCAGAC
CACATTTGGCGCCCCCCCCCCGAAAGCAGGAACTAGTACCAGTGTAGACC
GGTAAGCATGACTACGATTCGAGAGTGTTCTTCGACGACGGTGGGGGGGG
GAAGTGTTTTCGTGTGTGCTTGTTCAAAGAAAAGTGAAGTTTAGTTTATT
GCGTTTGTCATGGGACGGAGGGAATGTGTGGTATTCAAGTGTATATCAGC
TTGATATAACACGAAACGGTGACGTTCTGTATTCGTTGCAAGACGTGTCT
TGCAGTTTGTTTGTAAAGGAGTGGTACTGCTGTTGGTCTTTATGGACTGA
TTTGTTAGCCCTGGGGGGAGTTGTCTGGCAACGAAAGGGCTTGTATTGTG
TCGTATTGTCACTCACGTGTTACAACCCTGTTGAACTGTGTTGATTGTTT
TCCTTGTGGAGTCTCACGGTAGCGTTTCTTTCGTGTACGATCGCATCATC
ATCGTACAATATCATCATCACGATGTCCCCCGTATCTCTTTTTTGCAAGA
GTTGATCAATCACAAGTAGCTAAAGTCGTGCTGCCTGCCTGGTGCACAAA
AAGTTAATACGCCCGGTTTTCTCTTCCAGCCATAAAACATGAAAGCCACA
GGACGAGCAATCGTCTTCCCGCCATAAAAATCATGAAAGCCACGGGACGC
AGCTGTGATTGCTCGTCTTATCGCAACAGTATCGCAAGTAGAACAGCAGT
GCCACCAAACCTCCAAATGTAGAGACACCGAACAGCTGAACATGTCAACA
GCGGAACCTCGGCGTCGTAGCGTCGCGGTCATGCGGGGGGGGGGGCGGCG
GGTTACAAATCCTTCAGAAATAGATACAGGCGGGAGAGAACTTGTGATAT
TGTCATCGACGCCATGCACTAAACTTGAATGGTGGCCGGTCAGAAAGACC
AAAAGGCTCGATCACCCACTACTAGCTACTGCACATCGCGTTCCACGCTG
GACGCGTATATTAACTGCCGAACGAATTTACTGCAGGG
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protein sequence of Ec-27_006980.2

>Ec-27_006980.2 ID=Ec-27_006980.2|Name=Ec-27_006980.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=179bp
MLEYCLNIYCTILQDLFGGEGVLVKMATAPTEPIRIRTKGLAVRVTTVDK
HDIYHISDVDMTTSEASPRPLMTITSTMKEIIQFAPFVEHPVLVRRKSGL
IAEGNGSDIPAEPSNRQQQPSHARSGRFITISADLPDYPEGHLDASAGLL
LASSQPSPPNTVSLDEQTAGMLHVLLAC*
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mRNA from alignment at chr_27:6382870..6389195+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006980.2 ID=Ec-27_006980.2|Name=Ec-27_006980.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6326bp|location=Sequence derived from alignment at chr_27:6382870..6389195+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTCTTGTTTGTAGCG
AGAAACGCGGTGTGTTTGGTAAGAGAACGGTTGACAGGTGCAAATATGAG
CTTCTTCGAATAGTTCCTTAGCACTGCTGTGACCTGTACCGTCCGCTGCT
GCTGCTGCTCGCTCTGCTACACCAGATACGCACCGGGGTTGTCGTTCGTC
TGTCTTATGAAATACCCTGTACTTTGATTCAATCATGCTTGAATATTGCT
TGAATATTTATTGTACAATACTGCAGGATTTGTTCGGCGGGGAAGGTGTG
CTAGTGAAGATGGCCACGGCACCCACCGAGCCAATCAGGATTCGCACCAA
GGTATGTACATCAGAAGAGAGAGAACAGTAAATCAGAACCAGACACGTAG
CCAGGGGTGGTTGTACTGTGCCTTCCTGCTTCCTGGGTAGGCGCCGTGCC
CTCGGGAGTACTGCTGTGTGGTACCATGTTGGCTACGGCTGTAGCAGACT
GGCAAAGGATGTGCGGGGCGGTAATTAAAGTTTGGCTGCTGTACAAAGAC
CAGACTTCTCCTAACTTCGCGCCCAAGACATCTGATCTGAGGTTCTCGAG
TTACTGCTGTATGGATTTCTGTCTCTCTTCCTTTCCTGTCTTCCGGCACG
ATGTATTCCCATTTTCTCTTGTGGAATTTGTGGTGTTCCAGGGTCTGGCG
GTGAGAGTGACGACGGTGGACAAGCACGACATCTACCACATCTCCGACGT
AGACATGACCACATCCGAAGCCTCGCCCCGGCCTCTGATGACCATCACCA
GCACCATGAAGGAGATTATCCAGTTCGCACCGTTTGTTGAGCATCCGGTG
CTCGTGCGGCGTAAGGTGCGTCAGAAACTGAGTGGTACCGATGCATGCAA
GCACTCCATGTGGCACTTCCCAGGATGGCATACAATGAATAATAGGCTCT
TTCGCTGTATTGACGTAATGAGTGCTGTGAACACGATTCCAAGCACGGCA
AAAGACATAGCCGACTCTGCTGGAAGGGCGACTTAAATTTATGAAGACAA
GGACTGGTTGTGTTTTTTTTTTTCTTGGACTGGGTGCTCTTCAACAGCTG
ACGTACCACATGCGAGACTTTTGTTCGTTTTCACGGTAACCGACCGCGCC
AAAAACGAAAAAATGGCCAGTTTTTCGTGAAGAAAGTGTTGCGTGTTACA
AGACTTTTTTTCGGCATCCCTTCGGACGATGAGCGGCAAGAACGTGCATG
CAGGGTTCAACTGTAACAATCAGTGCGGGCAGTGCATACGTGTAACGGCC
ATGTTGTTTGTTGGTTACTTTTTTGGGGGGTCTTTCGAGGCCATTTTCCC
TCCCGACCCCGCACCCTAAATTCTGCAACCGATGCGTTTTTTTGCTGCAA
AATACACTGTCTATTGCTGTACCGGTTTGGTGCCTCGATGGCCTATAAAT
ATCAATAGTCCGGGCTGATCGCCGAAGGGAATGGTTCGGACATCCCTGCG
GAACCCTCAAACAGGCAGCAGCAGCCTTCGCACGCCAGGAGTGGAAGGTG
AGGCATTGGCGTTGTCTTTTTCGGCAATCAAACTAGAGGACGTATGCATA
CGTACGAGACAGTACGGTCGGACACCATGTAACCCTAACCCTATTTAGAG
CGATCATGAGCGACGCTGTACGATGTTTTTCGATGGTTTTAATCGTACAC
GGGGAGTTATCTCGTGCCCCATGAACGCCCTTAAAAGAAGAGAAGACAGA
AAACGTGTGCTTCCCTGACCTTCCGAGTGTTTTTCTCTATTAGGCGTTTG
TCGTACGCGCTGCTGCAACAGCCACATAACGTCAAGGGGTGTTGTTACCG
ATGCTTCTCTTGTTGTCAAACATTCGGCGAGATTGTGCCGTGTTCCGTGT
TCCGTGTTCCGTGTTCCGTGTTCCGTGTTCCGTGTTCCGTGCTCGGTTGT
TAGCGTTTGCATGCTCCCGGTTATTGGTGCCACTCTAAGCTTATGTAGCG
GCACCACGGATGCTGCGTGCGGAGATGTAGCAACAGCAGTGCATCAGCCG
GTGGTGTGTCGCTAATCGACAAAAGAAGTACAAGTCATAGCAAGTGAAGG
GGCGGTGCTGAAAGAGACGATGCTGCTTGTCATGTACACCCTCGGCAACC
AACAGCAGGCGCACCCCGCGCAACGGCTTCCCATCCCGGTGTCGTCCGCA
TCATCACTGCTTGTGCTTTGGCAGACAGCGTCAGCACGACGATGCCTTGC
TGTTTTCCTACAGTCAACTCTGTTAAGAGGTTATCATCCGTCAACTCTGT
GTACACTAACTCCTCTTGGAACAGTAGTGCCGCCAAGGAGTTGATTACTA
TGATATGATACAGTATGATACAGCAGTACGGGTACCTGTATTAGGCCGCA
AAGTAGTGCCAAGGGATTCGGCTGTACTGGTACTGGGCACCCTGCACTAT
GTTCAGGGTATGAGACCACTTGAATATTGTTGTCCGTCTGCGTCACGCGA
TTCCACCGGCCTTGCACAGGGCGATTCTACCAGCCTCACTTTTTCCTCCT
TATGCAGCGACCACTACTGCTGTACAGCAGTATTCACCAGGGAATCCAAA
TGCTTGGGATGACGAACTCTGCGTGGTGAAACTGCACTCGTGCACGCTTC
TTTTTTTGTCTTCGTGTTGACTCGTGTACTGTGGTATATACTACTTGCTC
AGGTTCATTACGATATCAGCGGACCTTCCCGACTACCCAGAGGGCCACCT
AGACGCCTCTGCGGGACTGCTGCTGGCCTCATCCCAGCCATCTCCTCCCA
ACACGGTGAGCCTAGACGAACAAACGGCTGGAATGCTACATGTGCTGCTG
GCATGCTGAACAGAGGAAATGATGCCCCTCTCGCCCTCGAGTGTTGTCTG
TTGTTGTTCGTAATAATGATGATGATAATGATTTGCCTTGTAGTTTGGTT
TTGTTGTCATTGTTGTAGCTGTTGGTTGATGATGATGGTGGGCTAGGGTT
GTTCTGTCTGTTGTTAGGGGGTTGTTTGGGTTTTCGATAGCGTAATGCAC
AGTGCTTGACTTATCGGGAGTCGTCCTTCGTTGCACTTAACGGCCACTTA
ACCCAGCACCGTTTGATTCTTCACATGTACAAGCCAGCCCCCCCCCCCCC
CCCCATTTTTTTTGCACAAGTATTTTATTCCACTTTCTACACAATAAAGT
GTGCGGCTTACTCAAGGGCACTCACTACCTCTCTCTCTGAGCCATTCCCT
CTCTTCTTCCATTGTAAAGTACCATGATACATAGGCAATAGATAAGACTG
TACCGGATATCTAATCTTGCTCTACTAGTCTTCGTTCTTCCCCTCGCTGC
CTCGGCAAGGCTTTTGCTTAGGCATGGCCCATAGCGAGGGGGGGGGGTCG
TTCTAGCGAGCATGGGTTAGACTCACCCTCAAAGGACCGATACCTTCTTG
CTGCGGCGCACCCGCCGCGAGGCGTGCGTAGTGGTAGAGTTGGGGTCGGC
ACTGGTGCGCGTCAGGTACAAAGTGCAGATGCGCGGGCCTCATGGCCGTC
GGTGTAGACAGCAATGTCCATCTCAGTTTTGTGCGCGGAGGCAGACGCCA
TCAGAAAGGTGGACGGGCACTATGTACACGGCCCTAGGTTTGCTAGAGGG
AGCTGTACTGTCTCAGTAACCTGGCTTCGCCATCAATGGGGAGGAGGGGA
CAGGTGGTGACGAGCTGAGTGGGCTAGTTGACCCTTCGGCGCGAGAATTT
TCAGACCAAGAACCTTAAGTGCAACGAGGGAGAAAGCGAGGAACCGACTG
GGAAGGACAGCAACGAGAGCGTGTACGGACGGAGCGGGTCGATTTTGGTC
GTGCTAGGACTGGCCGCAGCGGCACCGGAGCAGCGGCACCGGAGCAGCGG
CACCGGAGCAGCGGCATCGAGCAACGGCGCCGGAGCACACGGACGACGTC
GAACCGTGACGCACGGACGAACATTTTGTGTTGTCAAATATATTCCGTTT
TTTTTCCTGAACATTGGTGTGTATGTGACGACGTCACGGGCTTTGTAGAG
AGACGCGGCAGAGATGGCGCGGATAGCCCGGGTGACTTTTTTGTGTACCT
GCATCGTGGAAGACCCCTTCAATGTGGAATGATTTCTAGTCAGTGTCGAT
TATTTACACTGCTGTGTCCAACACAGATGATCAGGGGTAGATTCGGTGAT
TGTCAATTGCAATGATGGCTTTGGTTGGTTGTTCTTTTTCACTGTAAATT
TATGCCCACGGACGCATTCTGACAGCACTTCAGACAGCAGTTGCGCGCCC
CGAACTTGTGCCATGCCTACCATGGTGTTAATTGTACAGACAGCACTCCA
GACAGCTGTAGTCGACAGTCGACATTCATTTTGGTAAAGTGTAGGACAGG
GGGGGTGATGCTGCTGTAGTCGAATGTAGTGTGTGGACGGGTAGTTCAGT
TTTTGGGCACGCAAACGTGCTGCAGGGATGTAGGTGTACCTCTTCGGGCT
TGTGTACCCTTTTCTTGCTAGTTTGCGTGTTCTTTGGATCTTCTGATGGC
TCTAGCATTTTTGTGACCACGGACCGCGTCTTTGCTAGATTTTGGGATTA
GCAACTGACACGAGTTAAATGTGAAGACAACAACAACAACAACAACTCGC
GCCTCTTGATGTCTTTTTTAAGGAATATTCGTACAAGAAAAATACTACCC
GTTGGAAATAACCATAGCTCTCAGTCGTTTTTTGTCATCCTCTCTTAGAA
CCCTGCCGCTGCACTCGCTGTCCGCTCTTGTCTTGGATGACAGGAGGAAC
AACTACACCCGCTGGTGTCGGTAAAGGTTAACGCCAACCTCCACGGCGCT
GCCGCAGCAGTCGCCTCACCCGCAGACAGCGAGGACGCTAGCAGCGTCAC
GTCCAGCCAGGCGTCCGCAAACAGCCGGAGCAGCAGCATCCTCCGCAGGC
GGCCGTCGGTGTTCAACGCGCCGCCGCCGTTGCCGACGCCCTCCGCCTGG
GAGCGGGGAGGAGATAGTTCCGAGTCCGAACCAGACACTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAAGAACCTTATCCTGTCGAGCGAGTTTCAACCAGCGATGGG
GAGGGGAGTGAGGGGGAGGGGGGGGCGGGGGTTAGACCCTAACGGCCCCG
GAGAATACGGTAGGCGGTGTTTTCTCCGTGTCTTCTAGCGTCCCCGAGTA
CAGCATGCATGGATATTTTGTGGGTGATTGAGGGGGTTCTTGCTTGCGCC
TACGGCCGATAACGTTGTGCGTGCGTTCTGGACCAGACCACATTTGGCGC
CCCCCCCCCGAAAGCAGGAACTAGTACCAGTGTAGACCGGTAAGCATGAC
TACGATTCGAGAGTGTTCTTCGACGACGGTGGGGGGGGGAAGTGTTTTCG
TGTGTGCTTGTTCAAAGAAAAGTGAAGTTTAGTTTATTGCGTTTGTCATG
GGACGGAGGGAATGTGTGGTATTCAAGTGTATATCAGCTTGATATAACAC
GAAACGGTGACGTTCTGTATTCGTTGCAAGACGTGTCTTGCAGTTTGTTT
GTAAAGGAGTGGTACTGCTGTTGGTCTTTATGGACTGATTTGTTAGCCCT
GGGGGGAGTTGTCTGGCAACGAAAGGGCTTGTATTGTGTCGTATTGTCAC
TCACGTGTTACAACCCTGTTGAACTGTGTTGATTGTTTTCCTTGTGGAGT
CTCACGGTAGCGTTTCTTTCGTGTACGATCGCATCATCATCGTACAATAT
CATCATCACGATGTCCCCCGTATCTCTTTTTTGCAAGAGTTGATCAATCA
CAAGTAGCTAAAGTCGTGCTGCCTGCCTGGTGCACAAAAAGTTAATACGC
CCGGTTTTCTCTTCCAGCCATAAAACATGAAAGCCACAGGACGAGCAATC
GTCTTCCCGCCATAAAAATCATGAAAGCCACGGGACGCAGCTGTGATTGC
TCGTCTTATCGCAACAGTATCGCAAGTAGAACAGCAGTGCCACCAAACCT
CCAAATGTAGAGACACCGAACAGCTGAACATGTCAACAGCGGAACCTCGG
CGTCGTAGCGTCGCGGTCATGCGGGGGGGGGGGCGGCGGGTTACAAATCC
TTCAGAAATAGATACAGGCGGGAGAGAACTTGTGATATTGTCATCGACGC
CATGCACTAAACTTGAATGGTGGCCGGTCAGAAAGACCAAAAGGCTCGAT
CACCCACTACTAGCTACTGCACATCGCGTTCCACGCTGGACGCGTATATT
AACTGCCGAACGAATTTACTGCAGGG
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Coding sequence (CDS) from alignment at chr_27:6382870..6389195+

>Ec-27_006980.2 ID=Ec-27_006980.2|Name=Ec-27_006980.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=537bp|location=Sequence derived from alignment at chr_27:6382870..6389195+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTTGAATATTGCTTGAATATTTATTGTACAATACTGCAGGATTTGTT
CGGCGGGGAAGGTGTGCTAGTGAAGATGGCCACGGCACCCACCGAGCCAA
TCAGGATTCGCACCAAGGGTCTGGCGGTGAGAGTGACGACGGTGGACAAG
CACGACATCTACCACATCTCCGACGTAGACATGACCACATCCGAAGCCTC
GCCCCGGCCTCTGATGACCATCACCAGCACCATGAAGGAGATTATCCAGT
TCGCACCGTTTGTTGAGCATCCGGTGCTCGTGCGGCGTAAGTCCGGGCTG
ATCGCCGAAGGGAATGGTTCGGACATCCCTGCGGAACCCTCAAACAGGCA
GCAGCAGCCTTCGCACGCCAGGAGTGGAAGGTTCATTACGATATCAGCGG
ACCTTCCCGACTACCCAGAGGGCCACCTAGACGCCTCTGCGGGACTGCTG
CTGGCCTCATCCCAGCCATCTCCTCCCAACACGGTGAGCCTAGACGAACA
AACGGCTGGAATGCTACATGTGCTGCTGGCATGCTGA
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Synonyms
The feature 'Ec-27_006980.2' has the following synonyms
Synonym
Esi0339_0025
Esi_0339_0025