Ec-27_006880.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006880.1
Unique NameEc-27_006880.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length458
Homology
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BLAST of Ec-27_006880.1 vs. uniprot
Match: D7FY28_ECTSI (Phosphotriesterase-related protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY28_ECTSI)

HSP 1 Score: 881 bits (2277), Expect = 0.000e+0
Identity = 457/457 (100.00%), Postives = 457/457 (100.00%), Query Frame = 2 
Query:  155 MIPTVLLPVAADAVAGACSSREELLHRATTSSMTAFQDNPITLANLCEARSSGDADRFRLFSFDEGVQELASLKDAGGGLLVECSTAAEGRDPSGLAEISRRTGLGIVLGASCQQTNGTAQYEASPETISKELEHQLLFGEHGASSAAPSFAPSPAGAAVAESASAPARIQAGFLLVKLSSSCCRSPAAVRVETPAATATAGSPAQDTHGGLGRAAAIELEGAAMAQQATGAPLMIACSHFVRWPMVVAALVIATAHWGSSQDGTAXXXXXXXSRKVIVAGMHGGVSQSLHHQASLLSKGIVLCFDCFGRVEWLPGPDYYPSDEESAVRIAELVRQGFAERIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGLMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGFDADAAASK 1525
            MIPTVLLPVAADAVAGACSSREELLHRATTSSMTAFQDNPITLANLCEARSSGDADRFRLFSFDEGVQELASLKDAGGGLLVECSTAAEGRDPSGLAEISRRTGLGIVLGASCQQTNGTAQYEASPETISKELEHQLLFGEHGASSAAPSFAPSPAGAAVAESASAPARIQAGFLLVKLSSSCCRSPAAVRVETPAATATAGSPAQDTHGGLGRAAAIELEGAAMAQQATGAPLMIACSHFVRWPMVVAALVIATAHWGSSQDGTAXXXXXXXSRKVIVAGMHGGVSQSLHHQASLLSKGIVLCFDCFGRVEWLPGPDYYPSDEESAVRIAELVRQGFAERIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGLMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGFDADAAASK
Sbjct:    1 MIPTVLLPVAADAVAGACSSREELLHRATTSSMTAFQDNPITLANLCEARSSGDADRFRLFSFDEGVQELASLKDAGGGLLVECSTAAEGRDPSGLAEISRRTGLGIVLGASCQQTNGTAQYEASPETISKELEHQLLFGEHGASSAAPSFAPSPAGAAVAESASAPARIQAGFLLVKLSSSCCRSPAAVRVETPAATATAGSPAQDTHGGLGRAAAIELEGAAMAQQATGAPLMIACSHFVRWPMVVAALVIATAHWGSSQDGTAXXXXXXXSRKVIVAGMHGGVSQSLHHQASLLSKGIVLCFDCFGRVEWLPGPDYYPSDEESAVRIAELVRQGFAERIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGLMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGFDADAAASK 457
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BLAST of Ec-27_006880.1 vs. uniprot
Match: A0A329S0I0_9STRA (Phosphotriesterase-related protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S0I0_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.620e-25
Identity = 63/141 (44.68%), Postives = 83/141 (58.87%), Query Frame = 2 
Query: 1088 EWLPGPDYYPSDEESAVR-IAELVR--QGFAERIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGLMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGF 1501
            E +   D  P  +   V+ IA LV+    ++ +I+LS+ V +R    R+GG GY +       RLLR GVSA   GL+ R+N++ LL WY PP    IPK+YL C  C+K FEP+EGEYF KF F+YC  KCLR H    F
Sbjct:  296 ESMDNEDQQPPPDSRLVKWIASLVKIKPQYSSQILLSTNVHQRIQYRRYGGGGYTYLFEHFKHRLLRQGVSAAQWGLIMRENVVDLLAWYVPPEAPPIPKNYLQCSICEKYFEPIEGEYFTKFTFIYCGTKCLRRHSRQKF 436
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BLAST of Ec-27_006880.1 vs. uniprot
Match: A0A8K1CPN4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPN4_PYTOL)

HSP 1 Score: 119 bits (298), Expect = 4.830e-25
Identity = 136/498 (27.31%), Postives = 193/498 (38.76%), Query Frame = 2 
Query:  155 MIPTVLLPVAADAVAGACS---SREELLHRATTSSMTAFQDNPITLAN-------------LCEARSSGDADRFRLFSF---DEGVQELASLK--DAGGGLLVECSTAAEGRDPSGLAEISRRTGLGIVLGASCQQ-----TNGTAQYEASPETISKELEHQLLFGEHGASSAAPSFAPSPAGAAVAESASAPARIQAGFLL----------VKLSSSCCRSPAAVRVETPAATATAGSPAQDTHGGLGRAAAIELEGAAMAQQATGAPLMIACSHFVRWPMVVAALVIATA-HWGSSQDGTAXXXXXXXSRKVIVAGMHGGVSQSLHHQASLLSKGIVLCFDCFGRVEW----LPGPDYY------PSDEESAVRIAELVRQ-GFAERIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLR-LGVSAKDIGLMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGF 1501
            M+ TV   VAA++ +G+ S     E L+HR  +  +T  Q  PI  A              L E R +  A   R       DE  +E+ +L     G G++V+ +T +EGRD + L  ++ R    +V   S  +       G    EA  E ++K LE +L+FG  G                          + AG +           V L     R  A V+  T      + S A+ T                  QQA+   ++      ++       +VI  A HW                              ++     L  +G++L FD  G        L  P         P D   A  IA L+   G  +++++S+ V+ R    R+GG GY +  R    RL    GV+      + RDN LGLL WYTPP    IPK +L C  CKK FEP+ GEYF KFQF+YC  KCLR H   GF
Sbjct:    4 MLMTVRGAVAAESHSGSVSWVLPHEHLIHR-ISKRLTHAQSPPIAGATDASKIGDEIQMDQLHELRMNPSAYGGRNLIMEREDEVFREVEALTTFQPGVGVVVDVTTVSEGRDLAKLRRLAERLQCHVVASTSYDEHAIKTLPGDLIIEAKAERVAKTLETELMFGVEGTDP----------------------NVNAGVIYQQIHLDSSRDVLLDEVLARGLAMVQANTTVPVYLSFSSAEST------------------QQASSQRILDWIDALIKANATPQRIVICHADHW----------------------------CDNIAFLVELGRRGVMLSFDAIGLYTVSDVSLTSPSLDRDSSEPPRDSTIARAIASLINNHGLTQQLLVSTNVTLRTQFQRYGGGGYAYLFRHFKGRLAEDFGVTEAHWTQIVRDNALGLLTWYTPPEAAAIPKHFLLCSICKKPFEPIVGEYFTKFQFIYCGTKCLRKHSKLGF 432
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BLAST of Ec-27_006880.1 vs. uniprot
Match: A0A485LDY2_9STRA (Phosphotriesterase-related protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LDY2_9STRA)

HSP 1 Score: 118 bits (295), Expect = 7.140e-25
Identity = 70/160 (43.75%), Postives = 88/160 (55.00%), Query Frame = 2 
Query: 1052 GIVLCFDCFGRV---EWLPGP-----DYYPSDEESAVRIAELVRQG--FAERIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGLMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGF 1501
            G+ L FD  G     + LP P     D  P D +    + +L+      A R++++S VS+    +R GG G  HAL +   RL   GV+A     MT  N L LL  YTPPPP E+PKDYL C  C + FEP+ GEYF KF FVYC+ KCLR HR  GF
Sbjct:  237 GVYLSFDLLGLYAVSDHLPFPSSSSQDGPPRDADIVSCLVQLLAMNPAHAVRLLVTSTVSQTIQYTRHGGGGMTHALTSGRARLAAAGVTADQWNAMT--NPLSLLQCYTPPPPAELPKDYLVCSICARPFEPIVGEYFTKFAFVYCSTKCLRKHRIAGF 394
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BLAST of Ec-27_006880.1 vs. uniprot
Match: A0A2D4BQ76_PYTIN (Phosphotriesterase-related protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQ76_PYTIN)

HSP 1 Score: 116 bits (290), Expect = 4.850e-24
Identity = 118/412 (28.64%), Postives = 178/412 (43.20%), Query Frame = 2 
Query:  344 DEGVQELASLKDA--GGGLLVECSTAAEGRDPSGLAEISRRTG-LGIVLGASCQQT-----NGTAQYEASPETISKELEHQLLFGEHGASSAAPSFAPSPAGAAVAESASAPARIQAGFLLVKLSSSCCRSPAAVRVETPAATATAGSPAQDTHGGLGRAAAIELEGAAMAQQATGAPLMIACSHFVRWPMVVAALVIATAHWGSSQDGT---AXXXXXXXSRKVIVAGMHGGVSQSLHHQASLLS---------KGIVLCFDC--FGRVEWLPGPDYYPSDEESAVRIAELVRQGFAE-RIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRL---GVSAKDIGLMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGF 1501
            DE  +EL SL  +  G G++++ +T+ EGR    L  +S+R   + IV   S Q +     +    +E   E I+K LE +LLFG   +S                        ++AG +  ++        AA+ + T           +D          +   G A+AQ  T AP+ ++ S+      ++  +    AH  S +      A       S +V++        + L H+  L+S           + L   C   G VE        P+D   A  I +LV Q   E +I++SSGV++R    R+GG G+ HAL     RL+     G+S     ++TR+  + LL WYTPP    IPK +L C  C   FEP+ GEYF KF F+YC  KCLR H   GF
Sbjct:   80 DEVFRELESLSKSVTGHGIVLDTTTSEEGRSADQLRRLSKRLPQVDIVAATSFQPSEIRSLSADLSFEQKAERIAKFLETELLFGITDSSE----------------------EVRAGVIYQQVD-------AALAMTT-----------EDD---------LLARGLALAQANTRAPIFLSFSYASTNDAILGWVSRLEAHGASMECVVVCHADRWCDSDSGEVLL--------RELGHRRMLVSFDWIGLYTISDVALVNPCHSIGHVE-------PPNDRAIARCILKLVHQHNMEHQIMISSGVTQRLQFQRYGGGGFSHALLHFRRRLMTQEXPGLSPSQWRIITRETPMRLLAWYTPPEAAPIPKHFLLCSICATPFEPIVGEYFTKFSFIYCGTKCLRKHSKMGF 427
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BLAST of Ec-27_006880.1 vs. uniprot
Match: W2PXT5_PHYPN (Phosphotriesterase-related protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2PXT5_PHYPN)

HSP 1 Score: 114 bits (285), Expect = 2.130e-23
Identity = 58/131 (44.27%), Postives = 76/131 (58.02%), Query Frame = 2 
Query: 1115 PSDEESAVRIAELVRQG--FAERIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGLMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGF 1501
            PSD   A  IA L++    ++ +I+LS+ V +R    R+GG GY +       RLLR G+S      + R N++ LL WY PP    IPK+YL C  C+K FEP+EGEYF KF F+YC  KCLR H    F
Sbjct:  295 PSDSRLAKWIAGLMKTKPQYSSQILLSTNVHQRIQYRRYGGGGYTYLFEYFKHRLLRQGISEAQWDQIVRTNVVDLLAWYVPPEAPPIPKNYLQCSICEKYFEPIEGEYFTKFTFIYCGTKCLRRHSRQKF 425
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BLAST of Ec-27_006880.1 vs. uniprot
Match: A0A5D6Y6N1_9STRA (Phosphotriesterase-related protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y6N1_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.630e-22
Identity = 141/481 (29.31%), Postives = 203/481 (42.20%), Query Frame = 2 
Query:  137 PAGSSIMIPTVLLPVAADAVAGACSSREELLHR-ATTSSMTAFQDNPITLANLCEARSSGDADRFRLFSFDEGVQELASLK--DAGGGLLV--ECSTAAEGRDP--SGLAEISRRTGLGIVLGASCQQTNGTAQYEAS------PETISKELEHQLLFGEHGASSAAPSFAPSPAGAAVAESASAPARIQAGFLLVKLSSSCCRSPAAVRVETPAATATAGSPAQDTHGGLGRAAAIELEGAAMAQQATGAPLMIACSHFVRWPMVVAALVIATAHWGSSQDGTAXXXXXXXSRKVIVAGMH--------GGVSQSLH---HQASLLSKGIVLCFDCFGRVEWLPGPDYYPSDEESAVRIAELVRQGFAE--RIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGLMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGF 1501
            PA + +   +V   VA DAVA      E +LHR A   + +A       L  L  A ++ D     L   D+  +EL +LK   A G  LV  + +  +EGRD   +  A ++ R G+ IV  A+C     +A +          E ++K LE +L+FG   A + A  + P   GA   +  +A   + A   +V        + A V+  T A    + S A D  GG       E E     QQ     L +  +H V      A +V+  A      +  A        R V+  G+           VS ++      A + S+  VL           P     P D   A  IA L+R   A   +++LS+ + +R    R GG GY         RL R GV+ +    + R N + LL WYTPP    +PK++L C  C + FEPV GEYF KF+F+YC  KCLR H   GF
Sbjct: 1197 PAAAVLNSTSVRGDVAPDAVA-LVLPHEYVLHRIALGPAASAAGLRSEDLRELRVAPAALDGQNLVLEKEDDAFRELEALKALTATGQTLVVVDVTVPSEGRDEFMAKRARLAERLGVHIVTVATCDVIAASAGFPLGLAPLEKGERLAKALETELVFGFGAADTTAARYCP---GAIYQQVHAASPALSADGSVVA------HAIALVQQRTTAPVYLSFSLATDDSGGNSGGPQRETEH----QQLVLNWLRVLLAHGVD----SAKIVVCHADQWCETEEAAGGTPYGFLRSVLQLGVRLLFTMVGLAAVSDAIMINPRLAGVPSRAAVLA----------PTAREPPRDSSIARCIAWLIRDKDASVRQLLLSTNIQQRVQYLRHGGGGYAFLFSHFRERLARYGVTDRHFQQLVRTNPVELLGWYTPPVAAAVPKEFLRCSICSRDFEPVVGEYFTKFEFIYCGTKCLRKHSRQGF 1649
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BLAST of Ec-27_006880.1 vs. uniprot
Match: A0A662Y8Z7_9STRA (Phosphotriesterase-related protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y8Z7_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.960e-22
Identity = 55/137 (40.15%), Postives = 74/137 (54.01%), Query Frame = 2 
Query: 1115 PSDEESAVRIAEL-VRQGFAERIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGLMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGFDADAAAS 1522
            P D   A  +A   ++  +  +I+LS+ V +R    R+GG GY +      PRL RLG++      + R N + LL WY PP    IPK+YL C  C   FEP+EGEYF KF F+YC+ KCLR H    F    A +
Sbjct:  349 PPDSRLAKWVASFAIQHKYLHQILLSTNVHQRIQYRRYGGGGYTYVFEYFQPRLQRLGITVAQWDQLVRGNAVELLAWYVPPEAPPIPKNYLQCTICGNFFEPIEGEYFTKFAFIYCSTKCLRRHSRQKFATPPATA 485
[Close]
BLAST of Ec-27_006880.1 vs. uniprot
Match: D0N4W7_PHYIT (Phosphotriesterase-related protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N4W7_PHYIT)

HSP 1 Score: 107 bits (268), Expect = 1.460e-21
Identity = 52/120 (43.33%), Postives = 66/120 (55.00%), Query Frame = 2 
Query: 1142 IAELVRQGFAERIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGLMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGF 1501
            I  L    +  +++LS+ V +R    R+GG GY +      PR LR GVS      + R N++ LL WY PP    IPK+YL C  C   FEP+EGEYF KF F+YC  KCLR H    F
Sbjct:  245 IGLLAVSDYCSQLLLSTNVHQRIQYRRYGGGGYTYLFDHFKPRFLRRGVSEAQWEQIVRSNVVDLLAWYEPPEAPPIPKNYLQCSICANYFEPIEGEYFTKFTFIYCGTKCLRRHSRQKF 364
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BLAST of Ec-27_006880.1 vs. uniprot
Match: A0A484EDX9_BRELC (Phosphotriesterase-related protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDX9_BRELC)

HSP 1 Score: 106 bits (264), Expect = 1.040e-20
Identity = 56/140 (40.00%), Postives = 77/140 (55.00%), Query Frame = 2 
Query: 1094 LPGPDYY--PSDEESAVRIAELVRQG--FAERIILSSGVSRRFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGLMTRDNMLGLLDWYTPPPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGF 1501
            LPG +    PS    A  IA +++    +  +++LS+ V +R    R+GG GY +  +     +L  GVSA     + R N++ L  WY PP    IPK+YL C  C+K FEP+EGEYF KF F+YC  KCLR H    F
Sbjct:  289 LPGTNSQEPPSHRCIARTIANIIKINPQYCHQLLLSTNVHQRIQYRRYGGGGYTYLFKYFKTYVLGQGVSAAQWDQIVRGNVVKLWAWYVPPEVPPIPKNYLQCSICEKHFEPIEGEYFSKFTFIYCGTKCLRRHSRQNF 428
The following BLAST results are available for this feature:
BLAST of Ec-27_006880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY28_ECTSI0.000e+0100.00Phosphotriesterase-related protein n=2 Tax=Ectocar... [more]
A0A329S0I0_9STRA1.620e-2544.68Phosphotriesterase-related protein n=2 Tax=Phytoph... [more]
A0A8K1CPN4_PYTOL4.830e-2527.31Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485LDY2_9STRA7.140e-2543.75Phosphotriesterase-related protein n=1 Tax=Aphanom... [more]
A0A2D4BQ76_PYTIN4.850e-2428.64Phosphotriesterase-related protein n=1 Tax=Pythium... [more]
W2PXT5_PHYPN2.130e-2344.27Phosphotriesterase-related protein n=8 Tax=Phytoph... [more]
A0A5D6Y6N1_9STRA2.630e-2229.31Phosphotriesterase-related protein n=1 Tax=Pythium... [more]
A0A662Y8Z7_9STRA3.960e-2240.15Phosphotriesterase-related protein n=2 Tax=Nothoph... [more]
D0N4W7_PHYIT1.460e-2143.33Phosphotriesterase-related protein n=2 Tax=Phytoph... [more]
A0A484EDX9_BRELC1.040e-2040.00Phosphotriesterase-related protein n=1 Tax=Bremia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:6306483..6309899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue8.3e-23
Seed eggNOG ortholog4792.ETI40698
Length2122
KEGG koko:K07048
Hectar predicted targeting categoryother localisation
Gene idEc-27_006880.1
EggNOG free text desc.zinc ion binding
EggNOG OGs2RDJM@2759,3QEFP@4776,COG1735@1
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006880Ec-27_006880Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 6306483..6309899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006880.1Ec-27_006880.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 6306638..6309306 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006880.1.1Ec-27_006880.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6306483..6306982 +
Ec-27_006880.1.2Ec-27_006880.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6307482..6308203 +
Ec-27_006880.1.3Ec-27_006880.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6308692..6308941 +
Ec-27_006880.1.4Ec-27_006880.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6309250..6309899 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0068805UTR:Ec-27_006880.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_27 6306483..6306637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006880.1CDS:Ec-27_006880.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 6306638..6306982 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0068803UTR:Ec-27_006880.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_27 6309307..6309899 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006880.1 ID=Ec-27_006880.1|Name=Ec-27_006880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=458bp
MIPTVLLPVAADAVAGACSSREELLHRATTSSMTAFQDNPITLANLCEAR
SSGDADRFRLFSFDEGVQELASLKDAGGGLLVECSTAAEGRDPSGLAEIS
RRTGLGIVLGASCQQTNGTAQYEASPETISKELEHQLLFGEHGASSAAPS
FAPSPAGAAVAESASAPARIQAGFLLVKLSSSCCRSPAAVRVETPAATAT
AGSPAQDTHGGLGRAAAIELEGAAMAQQATGAPLMIACSHFVRWPMVVAA
LVIATAHWGSSQDGTAAAAAAATSRKVIVAGMHGGVSQSLHHQASLLSKG
IVLCFDCFGRVEWLPGPDYYPSDEESAVRIAELVRQGFAERIILSSGVSR
RFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGLMTRDNMLGLLDWYTP
PPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGFD
ADAAASK*
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spliced messenger RNA

>Ec-27_006880.1 ID=Ec-27_006880.1|Name=Ec-27_006880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2122bp|location=Sequence derived from alignment at chr_27:6306483..6309899+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GCCGCACATGACCGAGTTGCGTGGGTTCATGGTTCATGGGTTGCTCCCTT
GCCCTGTCTCTCCTACAGCTAGCTGTGTACGAAGCAGCAGACAGCATGTA
AGCACACACACCTCAGTCCTGACCATAGACTATATATCCAGCTGGCAGTT
CCATCATGATTCCCACGGTATTATTACCGGTAGCCGCAGACGCTGTTGCC
GGCGCCTGCAGCTCGCGGGAAGAGCTGCTGCACAGGGCGACTACCTCTAG
CATGACGGCATTCCAAGACAACCCCATCACCCTGGCTAACCTTTGCGAAG
CAAGAAGCAGCGGTGACGCAGACCGCTTCCGATTGTTCTCGTTCGACGAA
GGCGTTCAGGAGCTAGCGTCGTTGAAGGATGCCGGGGGTGGGTTGTTGGT
AGAGTGCTCGACGGCCGCAGAGGGACGGGATCCCTCAGGCCTGGCAGAGA
TTTCAAGGAGAACCGGTTTGGGGATTGTGCTGGGCGCTTCGTGCCAACAG
ACCAACGGGACAGCCCAATACGAGGCATCACCAGAAACAATCAGCAAGGA
GCTTGAGCACCAGCTTCTGTTCGGGGAACACGGCGCCTCCTCTGCCGCTC
CTTCCTTTGCACCTTCCCCTGCTGGCGCTGCCGTGGCGGAATCTGCCAGT
GCGCCTGCCAGGATCCAGGCGGGCTTTCTCCTTGTCAAGCTGAGCAGCAG
TTGTTGCCGCAGTCCAGCTGCAGTCCGCGTAGAGACGCCAGCAGCGACGG
CTACAGCGGGGTCTCCTGCTCAAGACACCCACGGGGGACTTGGGAGAGCC
GCCGCAATCGAGCTGGAAGGTGCGGCAATGGCGCAGCAAGCCACGGGAGC
ACCGCTCATGATAGCATGCTCTCATTTCGTTCGTTGGCCAATGGTGGTGG
CCGCCCTGGTGATCGCAACCGCACACTGGGGAAGCTCACAAGACGGCACC
GCTGCTGCTGCTGCTGCTGCTACGAGTAGGAAGGTTATCGTGGCAGGGAT
GCATGGGGGCGTGTCTCAATCTCTCCACCACCAAGCTTCGCTACTGAGCA
AAGGCATTGTATTGTGCTTCGACTGTTTCGGGAGGGTGGAGTGGTTGCCT
GGGCCGGACTACTACCCTTCGGACGAGGAGAGCGCGGTGCGGATTGCGGA
GCTTGTTCGTCAGGGATTCGCAGAGCGGATTATCTTATCGTCGGGAGTGT
CAAGGCGCTTTCATCTGTCCAGATTCGGGGGTTACGGCTACGGCCACGCC
TTGCGGACGGTCCCACCACGCCTACTACGACTCGGGGTTAGCGCGAAAGA
CATCGGGCTTATGACAAGGGATAACATGCTGGGCCTTCTGGACTGGTACA
CCCCGCCTCCTCCAATAGAGATCCCGAAGGATTACTTGCCGTGCTGTTGG
TGCAAGAAGCGCTTCGAACCGGTGGAGGGGGAGTACTTCCATAAGTTTCA
GTTCGTGTACTGCAACATCAAGTGCCTGCGAGCTCATCGAGACACCGGGT
TCGATGCTGATGCTGCCGCCAGTAAGTAGGGCGGCGTAGCAAGGGATCGG
AATTTCTTCTTGCCACGCCGGTCCTCATTTAGGTGCTGCTGTAAATTGAT
AGTTGTTCTGGGAATTGTTGCGAATGCGTCCATATTTCCTTCATGTAGTA
ACAAACAAGGAATGTTTACAGAGCCGTGCGGTCGTCGTGCCGACTACCGC
TATAGCACAACAGCTCACTCACGTTGACAACACTGGCATCACAGATATCT
TCACCGGCTAATGAGTCAGCTGAAGAAGGTTACCGGAAGTTGCTCCAGGT
GGATGTATCATCATCCATCTAGCCCGGAGGATGATGTCCGTTGAAAGAGG
CGTGGGTCCATCAGGCGGCGAAACGTAATCGCCGACGCGGCTCTTGGGTT
CAGCTTGGCCTCACTCCAGTTTGCGGAGGCACCGTTGAAACCATGCTTTC
GCAAGCGACAGCCCATGGGCTCCGCAGTGAGTGGTGCGTCTACGTACGCC
GCCGTAGATAACTGCCGGTCATTTTGGGCCGACCGGGTTTCGCAGCACAA
CGTAAATCGCTCATTGCTCCTCACGCAATGACATCATCAAAGACATGAAA
TTCGCTCGAAAAGGATATCCGC
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protein sequence of Ec-27_006880.1

>Ec-27_006880.1 ID=Ec-27_006880.1|Name=Ec-27_006880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=458bp
MIPTVLLPVAADAVAGACSSREELLHRATTSSMTAFQDNPITLANLCEAR
SSGDADRFRLFSFDEGVQELASLKDAGGGLLVECSTAAEGRDPSGLAEIS
RRTGLGIVLGASCQQTNGTAQYEASPETISKELEHQLLFGEHGASSAAPS
FAPSPAGAAVAESASAPARIQAGFLLVKLSSSCCRSPAAVRVETPAATAT
AGSPAQDTHGGLGRAAAIELEGAAMAQQATGAPLMIACSHFVRWPMVVAA
LVIATAHWGSSQDGTAAAAAAATSRKVIVAGMHGGVSQSLHHQASLLSKG
IVLCFDCFGRVEWLPGPDYYPSDEESAVRIAELVRQGFAERIILSSGVSR
RFHLSRFGGYGYGHALRTVPPRLLRLGVSAKDIGLMTRDNMLGLLDWYTP
PPPIEIPKDYLPCCWCKKRFEPVEGEYFHKFQFVYCNIKCLRAHRDTGFD
ADAAASK*
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mRNA from alignment at chr_27:6306483..6309899+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006880.1 ID=Ec-27_006880.1|Name=Ec-27_006880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3417bp|location=Sequence derived from alignment at chr_27:6306483..6309899+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GCCGCACATGACCGAGTTGCGTGGGTTCATGGTTCATGGGTTGCTCCCTT
GCCCTGTCTCTCCTACAGCTAGCTGTGTACGAAGCAGCAGACAGCATGTA
AGCACACACACCTCAGTCCTGACCATAGACTATATATCCAGCTGGCAGTT
CCATCATGATTCCCACGGTATTATTACCGGTAGCCGCAGACGCTGTTGCC
GGCGCCTGCAGCTCGCGGGAAGAGCTGCTGCACAGGGCGACTACCTCTAG
CATGACGGCATTCCAAGACAACCCCATCACCCTGGCTAACCTTTGCGAAG
CAAGAAGCAGCGGTGACGCAGACCGCTTCCGATTGTTCTCGTTCGACGAA
GGCGTTCAGGAGCTAGCGTCGTTGAAGGATGCCGGGGGTGGGTTGTTGGT
AGAGTGCTCGACGGCCGCAGAGGGACGGGATCCCTCAGGCCTGGCAGAGA
TTTCAAGGAGAACCGGTTTGGGGATTGTGCTGGGCGCTTCGTGCCAACAG
GTATGGGTGTTGTATACATGGTGCGGTTCATGCCTTTTGCAGCAGTGCCT
AAAATTAGAGGTCCAATCTCCCCCTGTTGCTGAACATAGAGGTCCAATCT
CTCCCTGTTGCTGAACCTGTGGTCGTATTTTTGGTAGGGACCGCGGAACA
GGTCGTCGACAATCTGTCATTCCAGCGCCGCCCACGATTTCACACCTCAA
CAACAATAACTCGGGTCACATGCATCGCTTCATATGAAAAGCTGTGCGTC
TACTTGCAGTTTTCGACTCTGCTATCTACCGCGCGCGAGCTGGCCTGGTT
GAAGTTTAGAGAAAGAACACGCCGTGCCTGCCCCGAAGAAGAATGCAATT
AACATGGAGTGTGAGTGTCTAATGGTAGGGCCCCGGCAGAAAGATGTTTC
AGCAAGCATGCTGCTGCTCAAATGTTTGCTGCTCTCAAGGCTACAGTAGA
TCGTATCCGTGTTGCGCCCCATCCCTGTGTGTTCTTGTAAACCTACCAGA
CCAACGGGACAGCCCAATACGAGGCATCACCAGAAACAATCAGCAAGGAG
CTTGAGCACCAGCTTCTGTTCGGGGAACACGGCGCCTCCTCTGCCGCTCC
TTCCTTTGCACCTTCCCCTGCTGGCGCTGCCGTGGCGGAATCTGCCAGTG
CGCCTGCCAGGATCCAGGCGGGCTTTCTCCTTGTCAAGCTGAGCAGCAGT
TGTTGCCGCAGTCCAGCTGCAGTCCGCGTAGAGACGCCAGCAGCGACGGC
TACAGCGGGGTCTCCTGCTCAAGACACCCACGGGGGACTTGGGAGAGCCG
CCGCAATCGAGCTGGAAGGTGCGGCAATGGCGCAGCAAGCCACGGGAGCA
CCGCTCATGATAGCATGCTCTCATTTCGTTCGTTGGCCAATGGTGGTGGC
CGCCCTGGTGATCGCAACCGCACACTGGGGAAGCTCACAAGACGGCACCG
CTGCTGCTGCTGCTGCTGCTACGAGTAGGAAGGTTATCGTGGCAGGGATG
CATGGGGGCGTGTCTCAATCTCTCCACCACCAAGCTTCGCTACTGAGCAA
AGGCATTGTATTGTGCTTCGACTGTTTCGGGAGGGTGGAGTGGTTGCCTG
GGCCGGACTACTACCCTTCGGACGAGGAGAGCGCGGTGCGGATTGCGGAG
CTTGTTCGTCAGGGATTCGCAGAGCGGATTATCTTATCGTCGGGAGTGTC
AAGGCGCTTTCATCTGTCCAGGTGGGAACCTACCCAGAGACACATGCAGA
CAGACGTAACGATGCGGTTGATTGCTGGGAAGCTCTTATTACTCTGGCTC
AGGAGAAAAATTCGAGTAGCATCTCCTACGCGGTGTGCAAATCAAATATT
AAAGTAGGTGTTTGCCCCTTAAGTTGGTGATCGCCCCTCTCTTCGAACAC
AAGGCGTTCAGAGGCCAATCGGTGCGTAGATGGGCACCACACGTTGTTTT
GCGTCTACAGCCTTGTGAGGTCAGACATCTTTGCTACCCTTGCCTACGGT
GTCCGTAAGGACCCCCGCTTCCTGCACCTCTTTTCCCCTATGATACGTGC
AGCGCTCGCCACCTCCAGCTAGAATTCCTGTAAACGTCAACTTTACAGCA
TGCAACCACAAGTGCTCCTGTCGGTCACGTGTTCTATGACCTATACTCAA
CTTCGCACCACCATTGTGTGAACCCCTAATCTCGCGCTTGTTCATGAACC
CACCCAAAGATTCGGGGGTTACGGCTACGGCCACGCCTTGCGGACGGTCC
CACCACGCCTACTACGACTCGGGGTTAGCGCGAAAGACATCGGGCTTATG
ACAAGGGATAACATGCTGGGCCTTCTGGACTGGTACACCCCGCCTCCTCC
AATAGAGATCCCGAAGGATTACTTGCCGTGCTGTTGGTGCAAGAAGCGCT
TCGAACCGGTGGAGGGGGAGTACTTCCATAAGTTTCAGTTCGTGTACTGC
AACATCAAGGTGGGCCGCCGCAATAGTTTTAGCACGGCATGGCATGGCGC
ATTAAACGACGCGAGAGGCCTTTACCCCCAAGCGCTGCGATTTCCTGGAG
TTGTACTGCCTTCGTTGAGTTGTATCTGCCGTAGAGCGCCGCAGCAGGCG
CGCGACGCGCCGCGTGACATACTGTACCACGTTCTTCCCGACAGTCGCAT
GCATGGTGTTTTGTGCCAGGTACATATTATTATCTTCTACTGACATTTTT
GCTGACTCGAATATCTCGGCCTCCTTTGTACCCACGCGTGTCTTCGAAAC
TCCCTCCTCTGCCCAAGTGCCTGCGAGCTCATCGAGACACCGGGTTCGAT
GCTGATGCTGCCGCCAGTAAGTAGGGCGGCGTAGCAAGGGATCGGAATTT
CTTCTTGCCACGCCGGTCCTCATTTAGGTGCTGCTGTAAATTGATAGTTG
TTCTGGGAATTGTTGCGAATGCGTCCATATTTCCTTCATGTAGTAACAAA
CAAGGAATGTTTACAGAGCCGTGCGGTCGTCGTGCCGACTACCGCTATAG
CACAACAGCTCACTCACGTTGACAACACTGGCATCACAGATATCTTCACC
GGCTAATGAGTCAGCTGAAGAAGGTTACCGGAAGTTGCTCCAGGTGGATG
TATCATCATCCATCTAGCCCGGAGGATGATGTCCGTTGAAAGAGGCGTGG
GTCCATCAGGCGGCGAAACGTAATCGCCGACGCGGCTCTTGGGTTCAGCT
TGGCCTCACTCCAGTTTGCGGAGGCACCGTTGAAACCATGCTTTCGCAAG
CGACAGCCCATGGGCTCCGCAGTGAGTGGTGCGTCTACGTACGCCGCCGT
AGATAACTGCCGGTCATTTTGGGCCGACCGGGTTTCGCAGCACAACGTAA
ATCGCTCATTGCTCCTCACGCAATGACATCATCAAAGACATGAAATTCGC
TCGAAAAGGATATCCGC
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Coding sequence (CDS) from alignment at chr_27:6306483..6309899+

>Ec-27_006880.1 ID=Ec-27_006880.1|Name=Ec-27_006880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1374bp|location=Sequence derived from alignment at chr_27:6306483..6309899+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATTCCCACGGTATTATTACCGGTAGCCGCAGACGCTGTTGCCGGCGC
CTGCAGCTCGCGGGAAGAGCTGCTGCACAGGGCGACTACCTCTAGCATGA
CGGCATTCCAAGACAACCCCATCACCCTGGCTAACCTTTGCGAAGCAAGA
AGCAGCGGTGACGCAGACCGCTTCCGATTGTTCTCGTTCGACGAAGGCGT
TCAGGAGCTAGCGTCGTTGAAGGATGCCGGGGGTGGGTTGTTGGTAGAGT
GCTCGACGGCCGCAGAGGGACGGGATCCCTCAGGCCTGGCAGAGATTTCA
AGGAGAACCGGTTTGGGGATTGTGCTGGGCGCTTCGTGCCAACAGACCAA
CGGGACAGCCCAATACGAGGCATCACCAGAAACAATCAGCAAGGAGCTTG
AGCACCAGCTTCTGTTCGGGGAACACGGCGCCTCCTCTGCCGCTCCTTCC
TTTGCACCTTCCCCTGCTGGCGCTGCCGTGGCGGAATCTGCCAGTGCGCC
TGCCAGGATCCAGGCGGGCTTTCTCCTTGTCAAGCTGAGCAGCAGTTGTT
GCCGCAGTCCAGCTGCAGTCCGCGTAGAGACGCCAGCAGCGACGGCTACA
GCGGGGTCTCCTGCTCAAGACACCCACGGGGGACTTGGGAGAGCCGCCGC
AATCGAGCTGGAAGGTGCGGCAATGGCGCAGCAAGCCACGGGAGCACCGC
TCATGATAGCATGCTCTCATTTCGTTCGTTGGCCAATGGTGGTGGCCGCC
CTGGTGATCGCAACCGCACACTGGGGAAGCTCACAAGACGGCACCGCTGC
TGCTGCTGCTGCTGCTACGAGTAGGAAGGTTATCGTGGCAGGGATGCATG
GGGGCGTGTCTCAATCTCTCCACCACCAAGCTTCGCTACTGAGCAAAGGC
ATTGTATTGTGCTTCGACTGTTTCGGGAGGGTGGAGTGGTTGCCTGGGCC
GGACTACTACCCTTCGGACGAGGAGAGCGCGGTGCGGATTGCGGAGCTTG
TTCGTCAGGGATTCGCAGAGCGGATTATCTTATCGTCGGGAGTGTCAAGG
CGCTTTCATCTGTCCAGATTCGGGGGTTACGGCTACGGCCACGCCTTGCG
GACGGTCCCACCACGCCTACTACGACTCGGGGTTAGCGCGAAAGACATCG
GGCTTATGACAAGGGATAACATGCTGGGCCTTCTGGACTGGTACACCCCG
CCTCCTCCAATAGAGATCCCGAAGGATTACTTGCCGTGCTGTTGGTGCAA
GAAGCGCTTCGAACCGGTGGAGGGGGAGTACTTCCATAAGTTTCAGTTCG
TGTACTGCAACATCAAGTGCCTGCGAGCTCATCGAGACACCGGGTTCGAT
GCTGATGCTGCCGCCAGTAAGTAG
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Synonyms
The feature 'Ec-27_006880.1' has the following synonyms
Synonym
Esi0339_0010
Esi_0339_0010