Ec-27_006820.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-27_006820.1
Unique Name	Ec-27_006820.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	175

Homology

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BLAST of Ec-27_006820.1 vs. uniprot
Match: D7FSY5_ECTSI (Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY5_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 4.610e-23
Identity = 61/66 (92.42%), Postives = 61/66 (92.42%), Query Frame = 1

Query:    1 MSTAAAPAAAAXAVAVEVVEKEELPTNEGSPELLKIRDTSAHVMAMAVQRLFPGTQVTIGPWIDNG 198
            MSTAAAPAA  X  AVEVVEKEELPTNEGSPELLKIR TSAHVMAMAVQRLFPGTQVTIGPWIDNG
Sbjct:   73 MSTAAAPAAXXXXXAVEVVEKEELPTNEGSPELLKIRHTSAHVMAMAVQRLFPGTQVTIGPWIDNG 138

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BLAST of Ec-27_006820.1 vs. uniprot
Match: A0A6H5JBI8_9PHAE (Threonine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBI8_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 5.260e-22
Identity = 61/66 (92.42%), Postives = 61/66 (92.42%), Query Frame = 1

Query:    1 MSTAAAPAAAAXAVAVEVVEKEELPTNEGSPELLKIRDTSAHVMAMAVQRLFPGTQVTIGPWIDNG 198
            MSTAAAPAAA  A AVEVVEKEELPTNE SPELLKIR TSAHVMAMAVQRLFPGTQVTIGPWIDNG
Sbjct:   73 MSTAAAPAAA-PAAAVEVVEKEELPTNESSPELLKIRHTSAHVMAMAVQRLFPGTQVTIGPWIDNG 137

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BLAST of Ec-27_006820.1 vs. uniprot
Match: A0A7S1EQB6_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EQB6_9RHOD)

HSP 1 Score: 77.0 bits (188), Expect = 1.110e-11
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 1

Query:   70 LPTNEGSPELLKIRDTSAHVMAMAVQRLFPGTQVTIGPWIDNG 198
            LPTN+ SPELLKIR T+AHVMAMAVQRLFP  QVTIGPWI+NG
Sbjct:   88 LPTNDSSPELLKIRHTTAHVMAMAVQRLFPDAQVTIGPWIENG 130

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BLAST of Ec-27_006820.1 vs. uniprot
Match: A0A7S0UC53_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UC53_HEMAN)

HSP 1 Score: 76.3 bits (186), Expect = 1.530e-11
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 1

Query:   70 LPTNEGSPELLKIRDTSAHVMAMAVQRLFPGTQVTIGPWIDNG 198
            LPTNE SPELLKIR T+AHVMAMAVQRLFP  QVTIGPWID G
Sbjct:  124 LPTNENSPELLKIRHTTAHVMAMAVQRLFPKAQVTIGPWIDYG 166

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BLAST of Ec-27_006820.1 vs. uniprot
Match: A0A835ZFX3_9STRA (Threonine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFX3_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.320e-11
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 1

Query:   25 AAAXAVAVEVVEKEELPTNEGSPELLKIRDTSAHVMAMAVQRLFPGTQVTIGPWIDNG 198
            AAA A+A EVV  E LPTN+ S  LLKIR T+AHVMAMAVQ+LFP TQVTIGPWID+G
Sbjct:   76 AAAPAIAEEVVPIE-LPTNKNSENLLKIRHTTAHVMAMAVQKLFPETQVTIGPWIDSG 132

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BLAST of Ec-27_006820.1 vs. uniprot
Match: A0A1Y1IJ25_KLENI (Threonine--tRNA ligase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJ25_KLENI)

HSP 1 Score: 76.6 bits (187), Expect = 3.200e-11
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1

Query:   58 EKEELPTNEGSPELLKIRDTSAHVMAMAVQRLFPGTQVTIGPWIDNG 198
            E+ ELPTN+ S  LLKIR TSAHVMAMAVQ+LFPGTQVTIGPWI+ G
Sbjct:  126 ERVELPTNDSSETLLKIRHTSAHVMAMAVQKLFPGTQVTIGPWIEKG 172

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BLAST of Ec-27_006820.1 vs. uniprot
Match: A0A7S1DHG6_HEMAN (Threonine--tRNA ligase n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DHG6_HEMAN)

HSP 1 Score: 76.3 bits (186), Expect = 4.240e-11
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 1

Query:   70 LPTNEGSPELLKIRDTSAHVMAMAVQRLFPGTQVTIGPWIDNG 198
            LPTNE SPELLKIR T+AHVMAMAVQRLFP  QVTIGPWID G
Sbjct:  129 LPTNENSPELLKIRHTTAHVMAMAVQRLFPKAQVTIGPWIDYG 171

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BLAST of Ec-27_006820.1 vs. uniprot
Match: A0A7S0BRC3_9RHOD (Threonine--tRNA ligase (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BRC3_9RHOD)

HSP 1 Score: 75.1 bits (183), Expect = 6.170e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 1

Query:   67 ELPTNEGSPELLKIRDTSAHVMAMAVQRLFPGTQVTIGPWIDNG 198
            ELPTNE + ELL++R T+AHVMAMAVQRLFP  QVTIGPWIDNG
Sbjct:   65 ELPTNENNEELLRMRHTTAHVMAMAVQRLFPNAQVTIGPWIDNG 108

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BLAST of Ec-27_006820.1 vs. uniprot
Match: W7TW93_9STRA (Threonine--tRNA ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TW93_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.080e-10
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 1

Query:   25 AAAXAVAVEVVEKEELPTNEGSPELLKIRDTSAHVMAMAVQRLFPGTQVTIGPWIDNG 198
            AAA +  V   +  +LP+N+ SP LL+IR TSAHVMAMAVQRLFP  QVTIGPWI+NG
Sbjct:  110 AAATSTEVRPTQAVKLPSNDQSPNLLRIRHTSAHVMAMAVQRLFPSVQVTIGPWIENG 167

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BLAST of Ec-27_006820.1 vs. uniprot
Match: A0A7R9Y5H9_9VIRI (Threonine--tRNA ligase n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y5H9_9VIRI)

HSP 1 Score: 74.7 bits (182), Expect = 1.230e-10
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1

Query:   67 ELPTNEGSPELLKIRDTSAHVMAMAVQRLFPGTQVTIGPWIDNG 198
            ELPTNE S  LL++R TS+HVMAMAVQ+L+PG QVTIGPWIDNG
Sbjct:   63 ELPTNESSDRLLRLRHTSSHVMAMAVQKLYPGAQVTIGPWIDNG 106

The following BLAST results are available for this feature:

BLAST of Ec-27_006820.1 vs. uniprot

BLAST of Ec-27_006820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FSY5_ECTSI	4.610e-23	92.42	Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculo...	[more]
A0A6H5JBI8_9PHAE	5.260e-22	92.42	Threonine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP...	[more]
A0A7S1EQB6_9RHOD	1.110e-11	83.72	Hypothetical protein (Fragment) n=1 Tax=Timspurcki...	[more]
A0A7S0UC53_HEMAN	1.530e-11	86.05	Hypothetical protein (Fragment) n=1 Tax=Hemiselmis...	[more]
A0A835ZFX3_9STRA	2.320e-11	74.14	Threonine--tRNA ligase n=1 Tax=Tribonema minus Tax...	[more]
A0A1Y1IJ25_KLENI	3.200e-11	78.72	Threonine--tRNA ligase n=1 Tax=Klebsormidium niten...	[more]
A0A7S1DHG6_HEMAN	4.240e-11	86.05	Threonine--tRNA ligase n=3 Tax=Hemiselmis andersen...	[more]
A0A7S0BRC3_9RHOD	6.170e-11	79.55	Threonine--tRNA ligase (Fragment) n=1 Tax=Rhodosor...	[more]
W7TW93_9STRA	1.080e-10	65.52	Threonine--tRNA ligase n=1 Tax=Nannochloropsis gad...	[more]
A0A7R9Y5H9_9VIRI	1.230e-10	77.27	Threonine--tRNA ligase n=1 Tax=Prasinoderma coloni...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_27	contig	chr_27:6247019..6258077 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	114.8
Seed ortholog evalue	4.1e-23
Seed eggNOG ortholog	2880.D7FSY5
Length	1334
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01868
KEGG Reaction	R03663
KEGG Pathway	ko00970,map00970
KEGG Module	M00359,M00360
Hectar predicted targeting category	other localisation
Gene id	Ec-27_006820.1
GOs	GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004829,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006435,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.	threonyl-tRNA aminoacylation
EggNOG OGs	COG0441@1,KOG1637@2759
EC	6.1.1.3
COG Functional cat.	J
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-27_006820	Ec-27_006820	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_27 6247019..6258077 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_006820.1	Ec-27_006820.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_27 6247019..6257268 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_006820.1.1	Ec-27_006820.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 6247019..6247215 +
Ec-27_006820.1.2	Ec-27_006820.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 6247281..6247465 +
Ec-27_006820.1.3	Ec-27_006820.1.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 6256523..6256589 +
Ec-27_006820.1.4	Ec-27_006820.1.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 6257193..6258077 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_006820.1	CDS:Ec-27_006820.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_27 6247019..6247215 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_006820	3UTR:Ec-27_006820.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_27 6257269..6258077 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_27:6247019..6258077+
coding sequence from alignment at chr_27:6247019..6258077+

mRNA sequence

>Ec-27_006820.1 ID=Ec-27_006820.1|Name=Ec-27_006820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=175bp
MSTAAAPAAAAPAVAVEVVEKEELPTNEGSPELLKIRDTSAHVMAMAVQR
LFPGTQVTIGPWIDNGGEDDVVRRFSGNGERPVDFAPVLQGQHLKGATGS
GRTKTGGFAALGVWGSDGMNEEFWPATARPPRVLKRGRFHVQETRCYDMC
LSRPFHTPLGRVHVHHSPQPAPNR*

spliced messenger RNA

>Ec-27_006820.1 ID=Ec-27_006820.1|Name=Ec-27_006820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1334bp|location=Sequence derived from alignment at chr_27:6247019..6258077+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACCGCCGCCGCGCCGGCCGCCGCCGCGCCTGCTGTTGCGGTAGA
GGTGGTGGAGAAGGAGGAGCTACCGACAAACGAGGGTTCGCCGGAGCTGT
TGAAGATCCGGGATACATCGGCGCACGTGATGGCCATGGCGGTGCAGCGG
CTGTTTCCGGGGACGCAGGTTACGATCGGACCCTGGATCGACAACGGCGG
CGAGGATGACGTGGTCCGAAGGTTCTCCGGAAACGGGGAACGGCCCGTTG
ACTTCGCTCCTGTGCTTCAAGGGCAACACCTGAAAGGGGCGACAGGATCA
GGACGGACAAAGACAGGAGGGTTTGCTGCCTTGGGAGTTTGGGGTTCCGA
CGGCATGAACGAAGAGTTTTGGCCTGCGACAGCACGACCTCCACGAGTCC
TCAAGCGCGGGCGGTTTCATGTCCAAGAAACACGATGCTATGATATGTGC
CTCTCCCGGCCGTTTCACACCCCGCTCGGCCGAGTTCATGTTCACCACAG
CCCCCAACCGGCCCCAAACCGATAGGAAGTCGGGCGTGGGTGGTGGGTAA
AAAAAGGCTCTGCTCTTAAAGGAGAGGAGAGAGACATGTATCTGGCCAGG
AACGAGTTTTGTTCGTTTCGTGCACATGTGTGAATACTGAAACTGTGTCC
GTCCGTCCTGTTCGATCCATCCACCTTACATGACCAGGTATAGGTACAAT
GTATACACTCGGACGCGGAGTACAGCAGAACCTAGGGACAGCAGTAGTGG
TAGGTGCGTCGGTTGCCCTTGACAACTTCTTGGAATTGCTTACGCTAACC
ACACAGTAAAGGTGTTAGACTGTCGACCTCTAAGATGGTTGAAACATGCA
CACCACCTGCCGTTAACCGCTATGGTCGGAGATTAGCTTGGATCTTGGAT
CTGCAGCGGCACGCCATCGTTGGCGCTCGTTTCCGGCAAGTTTACACGAG
GGAGCACAATTCCCCAATTGCAAATTGGGGTTCCAGCCAGCGCAATCCCG
AAAAAAGCAATAAAGAAATCCCGTCCGAAATTTCGATACTTTTATCGAGT
TAAAAAAACTGACAAAAATCCATACTTTAATCAAGTAAAAAAACTGATCA
AAATCGACTATGCAATCAAGTCGAAAAACTGATCGAGATTCGTGCTGTAT
TCAAGTGAAACGTGTGATGGAGACCGCCACATTTAACAAGTGAAAGCATG
TGATCACATCCGATAGTTAAATCAAGTCAGAAATGTCACACTTTTAAATT
ACTTGGTAGAGTCATATGGAATTGGAATCGTTCATTTATGTCAAGCGTTC
TAAACTCACTGTTTTGGTCTGCGCCAACATGCAC

protein sequence of Ec-27_006820.1

>Ec-27_006820.1 ID=Ec-27_006820.1|Name=Ec-27_006820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=175bp
MSTAAAPAAAAPAVAVEVVEKEELPTNEGSPELLKIRDTSAHVMAMAVQR
LFPGTQVTIGPWIDNGGEDDVVRRFSGNGERPVDFAPVLQGQHLKGATGS
GRTKTGGFAALGVWGSDGMNEEFWPATARPPRVLKRGRFHVQETRCYDMC
LSRPFHTPLGRVHVHHSPQPAPNR*

mRNA from alignment at chr_27:6247019..6258077+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-27_006820.1 ID=Ec-27_006820.1|Name=Ec-27_006820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=11059bp|location=Sequence derived from alignment at chr_27:6247019..6258077+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGCACCGCCGCCGCGCCGGCCGCCGCCGCGCCTGCTGTTGCGGTAGA
GGTGGTGGAGAAGGAGGAGCTACCGACAAACGAGGGTTCGCCGGAGCTGT
TGAAGATCCGGGATACATCGGCGCACGTGATGGCCATGGCGGTGCAGCGG
CTGTTTCCGGGGACGCAGGTTACGATCGGACCCTGGATCGACAACGGGTA
AGAGTTACCGCTGTAGCGGTTTCAAACTTCGGCAGCGACGGGACGGTCTA
TCTTGTACTCAGCGGCGAGGATGACGTGGTCCGAAGGTTCTCCGGAAACG
GGGAACGGCCCGTTGACTTCGCTCCTGTGCTTCAAGGGCAACACCTGAAA
GGGGCGACAGGATCAGGACGGACAAAGACAGGAGGGTTTGCTGCCTTGGG
AGTTTGGGGTTCCGACGGCATGAACGAAGAGTTTTGGCCTGCGACAGGTG
AGGACGAAAGGGGGCAGAGATTGTGGCCTGCCTCTGTCTTGACATTGACA
CATCCATGCCATGCCCTGTGTCGAAAATGCCTCAAGCAGGACGTGCCGCT
TACATACCGCTAATGTTATCCTAAAGCAAACGCACAAGATGTCACCGCTA
AAAAATTTCATTCGGCTGAGAAGTCCATCTGCGTGACCCCCCCCCCTGGG
CTGGTGCGATGCACAACGCACACCCGAGGGCGCAGACCCAGGAGTCCGGT
GTAGAAGTGATGGGCGGAAGACAGCTTCATACCACACGGTACGAAATCTC
CATGCTGTACCACACTCTTCATTTTGGTACCGCAATATCGGATCACTTGC
GGGCGGCACGATTTGCCCTCGCTCGGAGCTACAAGTACACATACCTTGCT
CCGCGGGGGCAATGCGGATTGACATTGATTAGGTAACCCCGTCGTCATCT
ATTCGCGGCACGTATTCCCGACGTCTCGTTTCTCGGAACTCGCCAAAAAG
CGAGAACGGAAGTTAAAAAGATACCGCACGCAGCCGCAAGTCTCACTTCA
TGTTGCCCCTGACACCAAAGCTCCTGATGGAGATGCTAACCCAAGGCGGG
GTGCGCCCGAAAACAACAGTAAAGGGGACGAACGTTTCTGATCTACCAGT
ATGGTCTACACAAAATCATCTTCGCGCGCGACCCTCGAACGTGACACACT
GCTGTCGGGGGTAGGGTCTGCATCAATCACCTTGACGGCGGTGATGCCAG
GGGTGTGGAAAATGTAGTCCAAGGTGTCGATGAACGGGTCCCAGTCCTCC
ACCTGCGAGAAGACAAAACGGCAGCATCGGCCATGGCATCAGCAGAAGGA
GCGGCACACACTATTTAGGTGGATCACTCTTTCCCAAATGGTCGTGCCGA
CACCCCCTGACTTCAGCACGCCAGGAATCGATTATTGACCAAAAAGGAAA
ACCCTGCTAGTTTGCATCACGAGCCGTCCTACTGCTGGACCTGACACCAT
GTCCAATACAGATCAGACTCTCACGTGAACTTTTCGGGCTCTTGCTTCGC
GCGGAACCTTTGTAACGAATGCAATTTAAAGCTCTTTCTTATACCGACGA
CGCCTCCGAACAGTGCGACGGGCTGAGAGAGCGAAAGTGCACGGAAACAG
ATAATCGAGAGAATCTTAACGTATGTCTAGCTAGCAAGTGCTTCATACGA
GTATACCTTAGCATTGTTGGTGAAATCCGGCTCCTTCCCATCCACTTGCT
TGTAGGCGCTCTGGAGGCAAACCCCAGTCTTGGGCGTCCAGTCCTTCTCC
CACTCAGGCCGAACCGGGAAGTCGCCGCTGCTTTCAGGCAAGTCGCCTGT
TGTTTTTTTGGCGATTATAGTATATGGTTGTCGGTTTGACGACCAACGGA
CGGAGGAAACAAATCAACGCTCAAGGGGGGGCAGGTGGGCACTACAGTTA
TATGAGTCAGTCGGAGACAAGACAATATCCGCAGGAATACCATTCGACCC
AACCATTTGACGCTTCAAACATCGGACATACATACATCTCCAGACAAACA
GCTGTGCTCCAGACCCCCCACGCCGTGCTCGAAAACAAAACAAAACAAAT
CATTCCTGACACGATTGCGCGGCGGGGGGAAAGGATCTGCGGCCTCTCAC
CTTCAACCGCGAGTTTGTAGCAATCCGAGTCAGGGTTAAAGTTGAAGTCC
CCCGCGAACACAAGCGGATCAGGTCCCGCCAGCTTGGCTAAGTGCCTTAT
GGCTAGCGATGTGTGCATGACCATCACAGGCCGGATGTTGAATAGGCACG
GCATGTGGTACGTCCCTACGCAGAAGGTGCCCCCGTTGGGCAAGTCAGCC
GAGCCCGTCTTGGGGCGGAGGCGGGCGAACAGCACCTGGTTGAAATGCCT
CTCCGCGATCTGCAGTCAGTTTTCGTCGGTTGAATAGTTCGGCGAGGAGC
ACGCGGGGAAAATAATGGCGGTTCGCGTAGATGAGAAAAATAAATGTGAT
AATGTGATTTTGTGGTGTTGGCAAGTGGTTTGATGTCGCTGTGGTTGTTG
TCCTCGTTGATGGCGATCTATTTCCATCTACACAAGTGTCAAAAGTTAAC
AACAAACATCGCCTTGTGCATATCGTCTCCTAAAAACCAAAAATTGCTTA
ATTACTTGAGATTGTATGGATTAATTAAATATGCCAGAGCAGTGGCAAGT
GTGAGAGGATTCGTAGAAGAACTGTTCCTCCGTACACGATTTCGCTCATA
CAGAAGCCGGGCTGCACTGACTGACACCTGGTACCAAGGCTATTCGTTGT
TTTTTTGCTGTTGAGAAAGGACTTTTTCACCCTGAGTTGTACCGAAGTGT
GGGGCGCGTGTGTGCTAGGGGACAGACTTCTGTCCGTGAGCTTACCCGCC
TTGAGTTCGATTCCCCCGACTTTTGCGATTTTTGCACATGGCCAACGAGC
GTCGACCGCAAGGCGCTTGCGTCCGAAATATAATTGATCCTGCCTCCATA
TATGTACTCCCCAAACCCAAAAACAATTAATTAAATCAAACACCCCCATA
TATTAATTAATTAAATCAAACTGTGGATGACAGGTGTAGAAGTGCTGTAA
CCATTGGTGTTGCACATACCAAAGTAGGACCAAGATACGATCCGAACGGA
GGATCTTACTGATGGTTGATCAGCAAGAGACCCGACTGTGGATGCGTCCC
TCTTGGCGCCACCTGTGGAGCTTGGGAATCCGAGACCCTCGGGCTTGGTC
TCCCTTGCCCCTTCGGCGGCACACTCTCCCTTGTCTCTCTCTTCTGAGAC
CCTCTCCTCTCTAAATCTCGACGAAGAGAACTGCCAGCCCTTAGTAGTGG
GAAAAGACTACTGCGACCTGGGCCTCCCCCCCAACGAGGGAAGCCTGTGT
CCTTATTGGCGTCGACGAATTAAAAGATACTCTGCTGGTACTGGAGGTAG
AGGTAAGAGATGCCGAAAAAATCAGCCGTGCAACGCGCTCGCGATAAGGC
GGACGCGGCGGAGGAAAAGAGCCTCAAGGAGCAGCAACGCCGCCTTGAGC
TGGAGGCTGAGCTAGATCAGCTCAAGCAACGCCTCGCCTCCAAACACCCG
ACAACCCCGCTAGCGCGTGGGACACCCTCGGAACGCGTGCCGGCTTCACG
CCCCTCGGGTGATAGCAGCCTTCTTGAGGAACAGTCGGATGACCCTGAGG
GTGCCGACCGCGCGAGTGCCACCAGCGGCGGTGAAGATGGCGGTGATCCC
GGTGAGCGCGACACGTTTGACGACGGCGAGAGGGGAGACGAGTATGAGGA
TGTTCCTCCTGCCGCCGGCCGGCAGCAGCAGGGGCGTTGGGCAGATGAGG
AGGAACCCGAAGATGAGGAGCCCGAGGTTCTTACGTCTCCGGCTGGCGCA
CCCATTGTGGAGATGCTGAAACAGCACCACCGTGATGGAACCGAACCTCC
CGAATGGCTTATGTCCATTGTACTGCCCGCCAACTCGCGAAAGGTGAATA
CTGCAGGTGGTAGCATGCCTGCTGTCCGACACGAACCCAACGTTGGTAGC
GAGGGTAGTGCCCGCCCGAACCTCCGGCGTGACAACAGCATACCATCTAA
TTTTGCTTCACAGCAGTCACCTATCCCGTCTCGGCAATTAGTAAACGATT
TTTCTCCGCAATCCGTGGAGACCCCGCGAGAAATCGACAACACCAGCAGG
ACTAGCGACCCTCTAGTGATGTCGAATGCCTCACCTACACACTCTAATGT
GCGCGCTGATGAACACCCGTCAGCGCACACTACGGGTACGTCTGCTCGTT
TCGTCTTAAAACCCGCAGACCTACCCAAAGATCTTGTTTTCTCAGGGGCA
CCTGGGCAAGATATTGTAGAACTTTTGGCGCAATACCGTGCACGTGTGAA
ACTGAACTCAGTCGACAACTGCCCTGACCATGTAGTCGACCAACGTGCTG
TGCGATACCTCCCGCTGTGTGTGACGTGCAGAGCGCGTACCACCAGATAC
CCGTTGCAGCAGCGGAGCAAGAGAAGACCGCCTTTGTAACTCAAAAAGGA
AAATGGGTTTTTAAACGTCTCCCTTTTGGAATTGCGAACGCTCCGTTTTT
ATTTGCTCGCATGATGTCATTAGCATTTGCACATTTTGGACCCCGAAGTG
GCCTCCTTGTTTACATGGACGACATCATTTGCTGTAGTTCGACTTGGGAA
AGTCATCTAACATTGTTAGAAAATACATTTCAAGCCCTTCAAGCCGCAGG
GCTCACATTGAAACCTTCCAAGGTACAATTCGGGCCAAGGGAAGTAAAAT
ATTTAGGTCACATTTTGTCTGCGAAAGGAATTCGAATCGGAGACGACCGC
ATTATAGCTATTGTTGACCTGCCCGCTCCTAAAACGATCAAAGAACTCCG
TTCAGTTTTAGGCATGATCAATTTTGTGAGGAAATTTCTCCCAGATTTGT
CCACGGTGGTAGCGCCGTTGGTAGACCTCACTAAAAAAGAGCACGTAAAA
TCGATTGCAAAACGTTGGCGAAACGACCATGATGAGGCGTTTGCGACAGT
CAAACGACTGCTCACGGAAGCACCTATTTTACACTTTCCTGATTTTACAA
AAGACTTCGTCGTGCACGTGGATGCCAGCGAAGCAGGTGCTGGAGCTTTC
CTTGCGCAGCAAACAGGAGATGACCTCAACATTATTGCGTATTTCAGCCA
ACGATTCAACAATGCTCAGCGCCACTATTCCCCAACCATGAAAGAATGTT
ACGCCGTCGTACTAGCAATACAGCACTGGCGGCCCTATTTATGGGGCAGA
CATTTTGAAGTTGTGACGGACCATGCTGCGCTGAGATACTTGTACACCAT
GCAGGACACTTCAAATTTGCTGACTAGGTGGGCTATCGCTCTGCAGTCCT
TTGACTTTACCGTGCGACACAAGCCGGGGAGGTTACACGTTGTTCCGGAT
ACCTTATCTCGGTTGTTTGCTTTTGAGTACCAGCAACACTTAGAAGCCCC
GAAACTAACACCGATTTGTAGGAATGTCCCCAAGGATCCTGCTTTGCATG
TAGCTGTACCGAACAGACCTTATCAAGTGGCCGCAGACCGCCTGGAAAAT
TTGAAACCAGTGCAAAGTGATCGCGAATTGTTTACCATTAATTCGGTTTA
CATCAGCGCGACCAACGTTTTTGAAACGATGAACCGAGACATCTTGCGAA
AGAAACAAGCAGCCGAGTATGGGAAATACATCGACTATCTTGTGGGGGAA
AACGCACGAGTTCCGGACCACGAAACAGCAACAACCATGTCCTATTATTT
TGTACGAGACGGATTGCTGTTCAAATCGTATTTACCAGGTTACCTCAGGA
AACGGAGTACTTTCACTGATCAATTAGTATTGCCACAAGCTCTCACGGGC
TTAGTTTTGCACGCTTACCATGATCACGTTTTGTCCGGAGGTCACCTAGC
ATCTAGACCGACTTATGACAAGATCCGCCAAAAATATTGGTGGCCGACCA
TGAGTCGTGACGTTCGCACTTGGTGTCAGGAGTGCCAAGCATGCCAACGT
CGGAAAACCGCGCACAATCGCACCAAACTGCCAACTGGACACGTACCAGT
ACAACGACCGTTTGAGCGAGTTTCAGTGGACTTAATTGAATACAAGAGCG
AATCGATGTCAGCCGCCGGCGTACGATGCAAATATGTCCTATCCATGATG
GACCATCTAACCCGATTCACCGTGTTGACTCCGATTCCGAATAAATCAGC
TGTCACAGTTGCTCAGGCTATCATTGACCGCATCATAGGCATTTTTGGAC
CGCCTGAGATGTTGCATTCTGATCAAGGGCCTGAATTTGAGAATAGTGTG
ATCCACCAGTTACAGAGTATTCTGAACTACAAGAAAACCCGCACAACACC
ATATCGTCTGCAAGGGAATTCTGTGTCGGAACGACTACATTCAACGATGC
ACGCAATGCTTGCCATGCATAGTTCAATGAAGCGTGATAACTGGGCATCG
CTACTACCTTTCATACAACTGGCGCATAACACTTCTTTTAGTGCTACCAT
GCATGAAACTCCATTTTTCCTCATGTTTGGCAGACAACCACGACTACCTG
TCGATATCATTCTCGGTATTCCTCATGTAGGAACAACAGCCAATACCGAA
GAACTAGCGAAGGACACGCGGGAAAATTTACAAATTGCTTTCGAATTAGC
GCGCCGAAACTTAACGGAACGTACACAAAAGCAAGCGGCGAGTAATTCAA
AACTGAGACCGATTCCCGTGTTTAAACCTGGCGATCAAGTACTGGTATAC
AGACCATATCAGGATTCCGATGGTCCCAACCCGAAATTGCTGTTACCTTG
GCGGGGACCATACGTCGTCTGCTCGCAACTATCACCCGTAGTATACCGAG
TGAGACGCCCCAAAGAAACTCGAGAAGTTTCGGTTCACCTAGCCCATATT
AAACGATATTTTGCGAGGAAAACACCGCCTGCGCCCGACTTTGATAAACT
CGCTGAGTTCTTTTTAGGGCGACAGATTCCGTTACCCGCTATCGACCACC
CTGATGAGGCCCAACCAAGAATTGAGTCTTATGTTGTAGACAAAGTGGTA
AGCCACAAAAGTGGTCGGGGTCCGAGGACTCCGTTTAATTACCGATACCG
TTTGCGTCTTCGAGGGTATGGCCCGGAGTCAGACCTCGAATACCGCGCAG
ATGAGGTACCACAATGTCAAGAAATGATAGCTGCATACCGAATCCGTTGT
GGTTTGGATATTATCGCGCCTCCTAAAACAACTTCGGTTCGCACCCTCAA
CAAGCAGGGGGACGAAGCATCACCCTGCCGAACTAGGAAGCGAAGACGTA
CCGAAGCAAGGAAGTGAGCAACATTGCCAGATATAGAGCGCTCAAAATTT
TTATCTGCTGTTGTTCTGCGGCTCAAATTTGTTTCATTTTTACGTTAAGT
TTTATTTTTAACGACAGAGGGACGAGTCAAAACTGTCTTTTTCCATGTCC
TTGTGACATGGAGATAGTAATGACACGTTAACACTATCTTTTTCCATATC
CTTGTGACACGGAGATAGTAATGAAACGTTAACACTATCTTTTTCCATAT
CCTTGTGACATGGAGATAGTAATGACACGTTAACACTATCTTTTTCCATA
TCCTTGTGACACGGAGATAGTAATGAAACGTTAACACTATCTTTTTCCAT
ATCCTTGTGACATGGAGATAGTAATGAAACGTTAACACTATCTTTTTCCA
TATCCTTGTGACATGGAGATAGTAATGACACGTTAACACTATCTTTTTCC
ATATCCTTGTGACATGGAGATAGTAATGAAACGTTAACACTATTTTTTTC
CATATCCTTGTGACATGGAGATAGTAATGAAACGTTAACACTATCTTTTT
CCATATCCTTGTGACATGGAGATAGTAATGACACGTTAACACTATTTTTT
TCCATACCCTCGGGACATGGAGATAGTGACGGTGAAAGGGGTTTTTGTAC
ATTTTTTGGTACACCCTATTTTATTTTATTTTCAGTGTTCTTGGGAAAAC
ACTGGCGAGGAGAGAGTCTTATGACTTTTTGTTGCTGTCAGCTTTGTTCC
AGAAACCAACGGAAACCACGCGACGTGTGGATACGTTTTACGGTTTCAAC
AAGCGAACGACAGATCGATTTCACCGGCCCCCGTTTACGTTGTGTCCACT
CCTTGGTTCTCGGCTATATCTTGAGTGAGTTTTCGACGAAGATCCATTCA
AGTAAAAAGACGGAATCAAGATATTAACACGGTTGGCCACGCGACCAATT
TTCCGTGATTGTTTGTCATTTTGCGACATTTTGTTATTTTTGCACCATCA
TCCAGCAAGCGCCTGATCCACGCGTGCGATGACGAACAGTGCATGAGTAA
AATGAGTTACCAGTTTCCGTGACATCGGTAAACTGTTTTGTAGCCAATTT
TTTTTTTTTTTTTTTCCCAGGCATGGTATATTAAGCTATCAGTTTCAAAC
TGTTTTGTAGCTGAAACCATGTTTGCTATTCAACTGCGTGAACACAATCT
GGGTATGGCCACCCTAGAATATATCTGAACGGAAGAAATTATTTTCTGTC
AGAATCATGCAGGAGATAAAGCATCTTTTATTTTTAGTTTGATTTCTGTA
CTTTTGCTATGGACCACATCTTCAACTGAGCTTGACGAACTCGTGTTTTC
TCAACACGGAAAATCTGACTCAGACACGGTTGAAGATGTTGCAACACAGA
ATGACAAAACTTCCAACACCTGTTTCCATGTATATCGTCCAAGGCCTCTA
GGAACGCCAAAATACATCCTTAGCAAAGATGAATTTGTGGCGCATAAAGG
GGGGGGTGATGTGGATGACAGGTGTAGAAGTGCTGTAACCATTGTTGTTG
CACATACCAAAGTAGGACCAAGATACGATCCGAACGGAGGATCTTACTGA
TGGTTGATCAGCAAGAGACCCGACTGTGGATGCGTCCCTCTTGGCGCCAC
CTGTGGAGCTTGGGAATCCGAGACCCTCGGGCTTGGTCTCCCTTGCCCCT
TCGGCGGCACACTCTCCCTTGTCTCTCTCTTCTGAGACCCTCTCCTCTCT
AAATCTCGACGAAGAGAACTGCCAGCCCTTAGTAGTGGGAAAAGACCACT
GCGACCTGGGCCTCCCCCCCAACGAGGGAAGCCTGTGTCCTTAAAACACC
CCCATATATATATCATTTCAGTTTGTAGTTGCTCTCTTCCGATTAGCCCC
ACACTGGGCGCGCTAGGTCCAAATACAGGCACCCCTTGCTGGGGAATTAT
ATGGGGTGTTTGATTTAATTGATTGTTTTTGGGTTTGGGGAGTACATATC
CAGTACCTAACACATATCATCTGCACCTTCCCAACATAACATATATATAT
ATATAGGGGTGTTTGATTTAATTAATTGTTTTTGGGTTTGGGGAGTACAT
ATGGATATATATATAGGGGTGTTTGATTTAATTAATTGTTTTTGGGTTCA
CCACCGCCGTCCCGACGAGCACCACCACAACTGCTGCCGCCCTCGACCCA
GCAGCACGACCTCCACGAGTCCTCAAGCGCGGGCGGTTTCATGTCCAAGA
AACACGATGCTATGATATGTGGTGAGTGTTTTCGTGGGCTCGGGAATCGT
TGCTTTGTGCACAGGTAGGTGTACGGACGCGCGACCGGACATGGGCCGGC
TACATATCGTACTAGCTGGAATTGCTGACGTGTATTTCTGCCTCATCGCG
ATGGTGTTGTATTGTTGTGTACATGTACAGCACTAGATACATGTACCCCA
GAACACTCGGCGGTCTCGAGGAGCTGCAACCGCTAACGCTCGTGTGAAGT
CGCATCACCAAGCTCAAGCCCAACCGAAGAGATGCCGCTGAGAGGTACAT
CTAGATATGCATAGAGCGAGCACGAGCATCACACAGAGAAAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGATCCCAAATGCC
TTCACGGACACCTTGTGTGACAGAACACAGAACATGTACCGCACCCTACC
AAGGCACCACCAACTGAAACCCATCCCAGCTAAACACTGTTGGCTCCCGC
GCACCCAAACGTAATACCTCCCACGGGTTCTCCGGTGCCCTCTCCCTCTC
CGCCGCCGCCTTCCCGTTACTGCTGCTGTTGCCATTGCTGTTGCCACTGC
TGCCGCTGCCGCTGCCGCTGTCAGCCTCTCCCGGCCGTTTCACACCCCGC
TCGGCCGAGTTCATGTTCACCACAGCCCCCAACCGGCCCCAAACCGATAG
GAAGTCGGGCGTGGGTGGTGGGTAAAAAAAGGCTCTGCTCTTAAAGGAGA
GGAGAGAGACATGTATCTGGCCAGGAACGAGTTTTGTTCGTTTCGTGCAC
ATGTGTGAATACTGAAACTGTGTCCGTCCGTCCTGTTCGATCCATCCACC
TTACATGACCAGGTATAGGTACAATGTATACACTCGGACGCGGAGTACAG
CAGAACCTAGGGACAGCAGTAGTGGTAGGTGCGTCGGTTGCCCTTGACAA
CTTCTTGGAATTGCTTACGCTAACCACACAGTAAAGGTGTTAGACTGTCG
ACCTCTAAGATGGTTGAAACATGCACACCACCTGCCGTTAACCGCTATGG
TCGGAGATTAGCTTGGATCTTGGATCTGCAGCGGCACGCCATCGTTGGCG
CTCGTTTCCGGCAAGTTTACACGAGGGAGCACAATTCCCCAATTGCAAAT
TGGGGTTCCAGCCAGCGCAATCCCGAAAAAAGCAATAAAGAAATCCCGTC
CGAAATTTCGATACTTTTATCGAGTTAAAAAAACTGACAAAAATCCATAC
TTTAATCAAGTAAAAAAACTGATCAAAATCGACTATGCAATCAAGTCGAA
AAACTGATCGAGATTCGTGCTGTATTCAAGTGAAACGTGTGATGGAGACC
GCCACATTTAACAAGTGAAAGCATGTGATCACATCCGATAGTTAAATCAA
GTCAGAAATGTCACACTTTTAAATTACTTGGTAGAGTCATATGGAATTGG
AATCGTTCATTTATGTCAAGCGTTCTAAACTCACTGTTTTGGTCTGCGCC
AACATGCAC

Coding sequence (CDS) from alignment at chr_27:6247019..6258077+

>Ec-27_006820.1 ID=Ec-27_006820.1|Name=Ec-27_006820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=525bp|location=Sequence derived from alignment at chr_27:6247019..6258077+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGCACCGCCGCCGCGCCGGCCGCCGCCGCGCCTGCTGTTGCGGTAGA
GGTGGTGGAGAAGGAGGAGCTACCGACAAACGAGGGTTCGCCGGAGCTGT
TGAAGATCCGGGATACATCGGCGCACGTGATGGCCATGGCGGTGCAGCGG
CTGTTTCCGGGGACGCAGGTTACGATCGGACCCTGGATCGACAACGGCGG
CGAGGATGACGTGGTCCGAAGGTTCTCCGGAAACGGGGAACGGCCCGTTG
ACTTCGCTCCTGTGCTTCAAGGGCAACACCTGAAAGGGGCGACAGGATCA
GGACGGACAAAGACAGGAGGGTTTGCTGCCTTGGGAGTTTGGGGTTCCGA
CGGCATGAACGAAGAGTTTTGGCCTGCGACAGCACGACCTCCACGAGTCC
TCAAGCGCGGGCGGTTTCATGTCCAAGAAACACGATGCTATGATATGTGC
CTCTCCCGGCCGTTTCACACCCCGCTCGGCCGAGTTCATGTTCACCACAG
CCCCCAACCGGCCCCAAACCGATAG

Synonyms

The feature 'Ec-27_006820.1' has the following synonyms


Synonym
Esi241_0060
Esi_241_0060