Ec-27_006800.3 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006800.3
Unique NameEc-27_006800.3
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length144
Homology
The following BLAST results are available for this feature:
BLAST of Ec-27_006800.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:6233595..6234729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length922
Hectar predicted targeting categoryother localisation
Gene idEc-27_006800.3
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006800Ec-27_006800Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 6232527..6244194 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006800.3.1Ec-27_006800.3.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6233595..6233677 +
Ec-27_006800.3.2Ec-27_006800.3.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6233891..6234729 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0068005UTR:Ec-27_006800.3Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_27 6233595..6233677 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006800.3CDS:Ec-27_006800.3Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 6234296..6234727 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0068003UTR:Ec-27_006800.3Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_27 6234728..6234729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006800.3Ec-27_006800.3Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 6234296..6234727 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006800.3 ID=Ec-27_006800.3|Name=Ec-27_006800.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=144bp
MPLPPLPLSPFLFSVSMYNETAPNTKASRREKINGSPTTAVDTRESLTAH
TKKMPSPHLSLSFRSPFPCDCPHPLPFPVSVSYRLCPPLPPFSLVINFSH
PISVLLRLPLIISCSPSLFLSLSLPFFLSFFLSLSLPFFLSFFL
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spliced messenger RNA

>Ec-27_006800.3 ID=Ec-27_006800.3|Name=Ec-27_006800.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=922bp|location=Sequence derived from alignment at chr_27:6233595..6234729+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGATTCCCGCAGCAGAGAGGACTCGTCTCAGCCCTTGCGGTGGG
CCTTGCGATGACCACGAGGGTGGCTTCTTTCAGTCACCCTTGTGGGTTGT
CGGTGGAGTTGTGGGTGTCACCGGCATGCAACAGCAGCGTCATGTTGTAC
AAGGATCGGACGTCCTGAAGTAGAGGCGCCCTGGTCTGAGGGCGAGGGTG
GGAGATATATGGAAGTAGAGATGGTTGTAGTAAGGTATTGAACAGTATCG
GGGGATACCAAGAGGGTGACGCTGTGGTGGTTGATGGTGACGTACAGGGA
CGTCATCACGCCCGAATTTAGTATGATTCCTGAAAAAAATATATATTATT
AGTAGGCACAAACATGATTAAATGCACTCTGTTGCATTAACCGCACCGAA
GACGAACGCAGCAGACGCGAAAAAGTGGACGGAACTGGTACTGCAGCAGT
TGACAGCAGGGAAAGCTTGACTTCGCAACACAAAGAAGATGCCTCTCCCT
CCCCTCCCTCTCTCTCCCTTCCTTTTCTCCGTCTCAATGTACAATGAAAC
CGCACCAAACACGAAGGCAAGCAGACGCGAAAAAATAAACGGAAGTCCTA
CGACAGCAGTTGACACCAGGGAAAGCTTGACTGCGCACACGAAGAAGATG
CCCTCTCCACACCTCTCTCTCTCCTTTCGCTCTCCCTTTCCGTGTGACTG
TCCTCACCCTCTCCCATTCCCTGTATCCGTTTCATACCGTCTCTGCCCAC
CCCTCCCCCCTTTTTCTCTCGTTATCAATTTTTCCCACCCTATATCTGTC
CTTCTCCGTCTCCCTCTTATTATTTCCTGTTCCCCCTCACTTTTTCTCTC
CCTTTCTCTGCCTTTCTTTCTCTCTTTCTTTCTCTCCCTTTCTCTGCCTT
TCTTTCTCTCTTTCTTTCTGTC
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protein sequence of Ec-27_006800.3

>Ec-27_006800.3 ID=Ec-27_006800.3|Name=Ec-27_006800.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=144bp
MPLPPLPLSPFLFSVSMYNETAPNTKASRREKINGSPTTAVDTRESLTAH
TKKMPSPHLSLSFRSPFPCDCPHPLPFPVSVSYRLCPPLPPFSLVINFSH
PISVLLRLPLIISCSPSLFLSLSLPFFLSFFLSLSLPFFLSFFL
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mRNA from alignment at chr_27:6233595..6234729+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006800.3 ID=Ec-27_006800.3|Name=Ec-27_006800.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1135bp|location=Sequence derived from alignment at chr_27:6233595..6234729+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGCGATTCCCGCAGCAGAGAGGACTCGTCTCAGCCCTTGCGGTGGG
CCTTGCGATGACCACGAGGGTGGCTTCTTTCAGGTGAATTGTGAATACAG
CAGTTGGTTCAGAACGTACGTGAGGCCCTCTCTGTCATCGCATCTCATTG
ACTGCTACTTTGTACACGCTGACAACATACAAACCAACACTGCCTGTTGC
TGCTGCTGCTGCTAGTGCTTCACTTAGGCGTCGTTCGTGCGGCACGGCCT
GACAATCATGGACGTTGCTTACTGTGGGAATAGTTTAAACTGTCAGTCAC
CCTTGTGGGTTGTCGGTGGAGTTGTGGGTGTCACCGGCATGCAACAGCAG
CGTCATGTTGTACAAGGATCGGACGTCCTGAAGTAGAGGCGCCCTGGTCT
GAGGGCGAGGGTGGGAGATATATGGAAGTAGAGATGGTTGTAGTAAGGTA
TTGAACAGTATCGGGGGATACCAAGAGGGTGACGCTGTGGTGGTTGATGG
TGACGTACAGGGACGTCATCACGCCCGAATTTAGTATGATTCCTGAAAAA
AATATATATTATTAGTAGGCACAAACATGATTAAATGCACTCTGTTGCAT
TAACCGCACCGAAGACGAACGCAGCAGACGCGAAAAAGTGGACGGAACTG
GTACTGCAGCAGTTGACAGCAGGGAAAGCTTGACTTCGCAACACAAAGAA
GATGCCTCTCCCTCCCCTCCCTCTCTCTCCCTTCCTTTTCTCCGTCTCAA
TGTACAATGAAACCGCACCAAACACGAAGGCAAGCAGACGCGAAAAAATA
AACGGAAGTCCTACGACAGCAGTTGACACCAGGGAAAGCTTGACTGCGCA
CACGAAGAAGATGCCCTCTCCACACCTCTCTCTCTCCTTTCGCTCTCCCT
TTCCGTGTGACTGTCCTCACCCTCTCCCATTCCCTGTATCCGTTTCATAC
CGTCTCTGCCCACCCCTCCCCCCTTTTTCTCTCGTTATCAATTTTTCCCA
CCCTATATCTGTCCTTCTCCGTCTCCCTCTTATTATTTCCTGTTCCCCCT
CACTTTTTCTCTCCCTTTCTCTGCCTTTCTTTCTCTCTTTCTTTCTCTCC
CTTTCTCTGCCTTTCTTTCTCTCTTTCTTTCTGTC
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Coding sequence (CDS) from alignment at chr_27:6233595..6234729+

>Ec-27_006800.3 ID=Ec-27_006800.3|Name=Ec-27_006800.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=432bp|location=Sequence derived from alignment at chr_27:6233595..6234729+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCTCTCCCTCCCCTCCCTCTCTCTCCCTTCCTTTTCTCCGTCTCAAT
GTACAATGAAACCGCACCAAACACGAAGGCAAGCAGACGCGAAAAAATAA
ACGGAAGTCCTACGACAGCAGTTGACACCAGGGAAAGCTTGACTGCGCAC
ACGAAGAAGATGCCCTCTCCACACCTCTCTCTCTCCTTTCGCTCTCCCTT
TCCGTGTGACTGTCCTCACCCTCTCCCATTCCCTGTATCCGTTTCATACC
GTCTCTGCCCACCCCTCCCCCCTTTTTCTCTCGTTATCAATTTTTCCCAC
CCTATATCTGTCCTTCTCCGTCTCCCTCTTATTATTTCCTGTTCCCCCTC
ACTTTTTCTCTCCCTTTCTCTGCCTTTCTTTCTCTCTTTCTTTCTCTCCC
TTTCTCTGCCTTTCTTTCTCTCTTTCTTTCTG
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Synonyms
The feature 'Ec-27_006800.3' has the following synonyms
Synonym
Esi241_0058
Esi_241_0058