Ec-27_006800.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006800.1
Unique NameEc-27_006800.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length56
Homology
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BLAST of Ec-27_006800.1 vs. uniprot
Match: D7FSY5_ECTSI (Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY5_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.470e-6
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:    1 MARFPQQRGLVSALAVGLAMTTRVASF 81
            MARFPQQRGLVSALAVGLAMTTRVASF
Sbjct:    1 MARFPQQRGLVSALAVGLAMTTRVASF 27
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BLAST of Ec-27_006800.1 vs. uniprot
Match: A0A6H5JBI8_9PHAE (Threonine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBI8_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 7.110e-6
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 MARFPQQRGLVSALAVGLAMTTRVASF 81
            MARFPQQRGLVSALAVGLAM TRVASF
Sbjct:    1 MARFPQQRGLVSALAVGLAMATRVASF 27
The following BLAST results are available for this feature:
BLAST of Ec-27_006800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSY5_ECTSI1.470e-6100.00Threonine--tRNA ligase n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JBI8_9PHAE7.110e-696.30Threonine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:6233595..6233975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length168
Hectar predicted targeting categorysignal peptide
Gene idEc-27_006800.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006800Ec-27_006800Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 6232527..6244194 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006800.1.1Ec-27_006800.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6233595..6233677 +
Ec-27_006800.1.2Ec-27_006800.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6233891..6233975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006800.1CDS:Ec-27_006800.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 6233595..6233677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006800.1Ec-27_006800.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 6233595..6233975 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006800.1 ID=Ec-27_006800.1|Name=Ec-27_006800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=56bp
MARFPQQRGLVSALAVGLAMTTRVASFSHPCGLSVELWVSPACNSSVMLY
KDRTS*
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spliced messenger RNA

>Ec-27_006800.1 ID=Ec-27_006800.1|Name=Ec-27_006800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=168bp|location=Sequence derived from alignment at chr_27:6233595..6233975+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGATTCCCGCAGCAGAGAGGACTCGTCTCAGCCCTTGCGGTGGG
CCTTGCGATGACCACGAGGGTGGCTTCTTTCAGTCACCCTTGTGGGTTGT
CGGTGGAGTTGTGGGTGTCACCGGCATGCAACAGCAGCGTCATGTTGTAC
AAGGATCGGACGTCCTGA
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protein sequence of Ec-27_006800.1

>Ec-27_006800.1 ID=Ec-27_006800.1|Name=Ec-27_006800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=56bp
MARFPQQRGLVSALAVGLAMTTRVASFSHPCGLSVELWVSPACNSSVMLY
KDRTS*
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mRNA from alignment at chr_27:6233595..6233975+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006800.1 ID=Ec-27_006800.1|Name=Ec-27_006800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=381bp|location=Sequence derived from alignment at chr_27:6233595..6233975+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGCGATTCCCGCAGCAGAGAGGACTCGTCTCAGCCCTTGCGGTGGG
CCTTGCGATGACCACGAGGGTGGCTTCTTTCAGGTGAATTGTGAATACAG
CAGTTGGTTCAGAACGTACGTGAGGCCCTCTCTGTCATCGCATCTCATTG
ACTGCTACTTTGTACACGCTGACAACATACAAACCAACACTGCCTGTTGC
TGCTGCTGCTGCTAGTGCTTCACTTAGGCGTCGTTCGTGCGGCACGGCCT
GACAATCATGGACGTTGCTTACTGTGGGAATAGTTTAAACTGTCAGTCAC
CCTTGTGGGTTGTCGGTGGAGTTGTGGGTGTCACCGGCATGCAACAGCAG
CGTCATGTTGTACAAGGATCGGACGTCCTGA
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Coding sequence (CDS) from alignment at chr_27:6233595..6233975+

>Ec-27_006800.1 ID=Ec-27_006800.1|Name=Ec-27_006800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=168bp|location=Sequence derived from alignment at chr_27:6233595..6233975+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGCGATTCCCGCAGCAGAGAGGACTCGTCTCAGCCCTTGCGGTGGG
CCTTGCGATGACCACGAGGGTGGCTTCTTTCAGTCACCCTTGTGGGTTGT
CGGTGGAGTTGTGGGTGTCACCGGCATGCAACAGCAGCGTCATGTTGTAC
AAGGATCGGACGTCCTGA
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Synonyms
The feature 'Ec-27_006800.1' has the following synonyms
Synonym
Esi241_0058
Esi_241_0058