Ec-27_006530.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006530.1
Unique NameEc-27_006530.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length264
Homology
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BLAST of Ec-27_006530.1 vs. uniprot
Match: D8LAS6_ECTSI (Flavin_Reduct domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAS6_ECTSI)

HSP 1 Score: 516 bits (1330), Expect = 5.110e-185
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1 
Query:    1 MMTTARRDWHAAVNAFVLLVLLGTFGEAFVAQSVAPSSSSSSRSTSERHRSSSRCHDPTGASSPNRGSTSSTGRSGSVSFLRATEGEAGDRALPSLTKHHAPPALSVPVFSLATVNEDGSTNMNIVTYASPVGIEPERLWMVSLFKSTLSYENFVREGWGVMQLLQRNHAPLVPILGQSGGRDTDKAGRCAEQAFPWDEPSCMNVAIIPGCGSYVTLHMVSKQSAGDHDAIICRIGNIFGPDEAASSRLEVLESGHLRKAGII 789
            MMTTARRDWHAAVNAFVLLVLLGTFGEAFVAQSVAPSSSSSSRSTSERHRSSSRCHDPTGASSPNRGSTSSTGRSGSVSFLRATEGEAGDRALPSLTKHHAPPALSVPVFSLATVNEDGSTNMNIVTYASPVGIEPERLWMVSLFKSTLSYENFVREGWGVMQLLQRNHAPLVPILGQSGGRDTDKAGRCAEQAFPWDEPSCMNVAIIPGCGSYVTLHMVSKQSAGDHDAIICRIGNIFGPDEAASSRLEVLESGHLRKAGII
Sbjct:    1 MMTTARRDWHAAVNAFVLLVLLGTFGEAFVAQSVAPSSSSSSRSTSERHRSSSRCHDPTGASSPNRGSTSSTGRSGSVSFLRATEGEAGDRALPSLTKHHAPPALSVPVFSLATVNEDGSTNMNIVTYASPVGIEPERLWMVSLFKSTLSYENFVREGWGVMQLLQRNHAPLVPILGQSGGRDTDKAGRCAEQAFPWDEPSCMNVAIIPGCGSYVTLHMVSKQSAGDHDAIICRIGNIFGPDEAASSRLEVLESGHLRKAGII 263
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BLAST of Ec-27_006530.1 vs. uniprot
Match: A0A7S2RNZ4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RNZ4_9STRA)

HSP 1 Score: 145 bits (365), Expect = 3.030e-39
Identity = 74/182 (40.66%), Postives = 108/182 (59.34%), Query Frame = 1 
Query:  298 HAPPALSVPVFSLATVNEDGSTNMNIVTYASPVGIEPERLWMVSLFKSTLSYENFVREGWGVMQLLQRNHAPLVPILGQSGGRDTDKAGRCAEQAFPW---------DEPSCMNVA--IIPGCGSYVTLHMVSKQ--SAGDHDAIICRIGNIFGPDEA-----ASSRLEVLESGHLRKAGII 789
            ++PP + VP ++LATV  DG+TNMNI+TYA+P+ I P+R+W + LFK TLS+ENF R G  ++QLL  +H+ LVP LG + GRD DK     +  FPW         DE   +     ++PGC  Y+ L +V  +   AG HD  +C++  +F  D+      AS++   L +  LR+ GII
Sbjct:   26 NSPPLIDVPTYALATVCRDGTTNMNILTYATPISIRPDRIWSIGLFKGTLSHENFQRTGRAILQLLDESHSKLVPSLGGTCGRDVDKRAESEKLNFPWVKLPNSSENDEKDELQQQPLVLPGCPHYIVLSLVDGKLIDAGSHDVALCKVDEMFVSDDCELDDTASTKASYLSTNRLREKGII 207
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BLAST of Ec-27_006530.1 vs. uniprot
Match: A0A7S2E2S7_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2E2S7_9EUKA)

HSP 1 Score: 143 bits (361), Expect = 1.870e-38
Identity = 73/176 (41.48%), Postives = 105/176 (59.66%), Query Frame = 1 
Query:  283 SLTKHHAPPALSVPVFSLATVNEDGSTNMNIVTYASPVGIEPERLWMVSLFKSTLSYENFVREGWGVMQLLQRNHAPLVPILGQSGGRDTDKAGRCAEQAFPWDEPS------CMNVAIIPGCGSYVTLHMVSK-QSAGDHDAIICRIGNIFGPDEAASSRLEVLESGHLRKAGII 789
            +L    APP L+ PVFSL+T+N DG+TNM I+TYA+PVGI P+R W VSL++ TL++ NF ++  G++Q+L   HA +V  LG   G D+DKA  CA   F W +P         +  ++PGC  Y+ L  V + Q  G+HD  IC + ++ G       R   L + HLR+ G+I
Sbjct:   44 ALMPTEAPPLLNSPVFSLSTLNADGTTNMQILTYATPVGIGPKRTWGVSLYRPTLTHANFCKQRSGILQVLCEPHAAIVFALGGKSGNDSDKAAACAAAGFEWIKPPESWGGPTRSPLLLPGCSRYLRLSQVGELQPCGEHDLAICAVEDMLGLPPEDELRAVALSTAHLRELGLI 219
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BLAST of Ec-27_006530.1 vs. uniprot
Match: A0A7S0HHD5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HHD5_9EUKA)

HSP 1 Score: 141 bits (355), Expect = 5.670e-38
Identity = 77/176 (43.75%), Postives = 104/176 (59.09%), Query Frame = 1 
Query:  280 PSLTKHHAPPALSVPVFSLATVNEDGSTNMNIVTYASPVGIEPERLWMVSLFKSTLSYENFVREGWGVMQLLQRNHAPLVPILGQSGGRD--TDKAGRCAEQAFPWDEPS-CMNVAIIPGCGSYVTLHMVSKQ-SAGDHDAIICRIGNIFGPDEA--ASSRLEVLESGHLRKAGII 789
            P+L    APP LS PVFSLAT+  DG T+MN++TYA+P+ + PERLW +SLF+ T S+ N+ R G GV+Q L   HAPL   LG +   D   DKA  CA   + W E   C    ++PGC +YV L    +   AG H+  IC++   FG  EA   ++R   L +  LR+AG+I
Sbjct:   17 PALVPVEAPPLLSSPVFSLATLGADGRTSMNMLTYATPISVRPERLWAISLFRDTQSHANWQRRGTGVLQQLSAEHAPLTSALGGTSSADEGVDKAAACAVLGWEWSEGGECGEEQLLPGCLTYVRLVQQGELIDAGGHEVAICKLERTFGQAEADEPAARGLALSTAELRRAGLI 192
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BLAST of Ec-27_006530.1 vs. uniprot
Match: A0A7S4PWJ3_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4PWJ3_9DINO)

HSP 1 Score: 138 bits (348), Expect = 4.250e-36
Identity = 69/149 (46.31%), Postives = 92/149 (61.74%), Query Frame = 1 
Query:  286 LTKHHAPPALSVPVFSLATVNEDGSTNMNIVTYASPVGIEPERLWMVSLFKSTLSYENFVREGWGVMQLLQRNHAPLVPILGQSGGRDT--DKAGRCAEQAFPWDEPSCMNVAIIPGCGSYVTLHMVSKQS-AGDHDAIICRIGNIFGP 723
            L  H APP L+VPV+SLAT++  G TNMNI+TYASPVGI P R W +SL++ T S+ NF+    GV+QLL  +HAPLV +LG     D   DKA  C  + F W     +   ++P C +Y+ L +  + + AGDHD  ICR+  I  P
Sbjct:   78 LESHDAPPLLNVPVYSLATLDSTGKTNMNILTYASPVGIRPARAWCISLYRKTQSHRNFIERRSGVLQLLGESHAPLVYLLGGQSSEDAGVDKAEGCRAEGFEWVSQEGVEEMLLPRCRAYLRLVLEGEVTDAGDHDVAICRLDQILYP 226
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BLAST of Ec-27_006530.1 vs. uniprot
Match: B7G584_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G584_PHATC)

HSP 1 Score: 137 bits (344), Expect = 5.280e-36
Identity = 78/187 (41.71%), Postives = 103/187 (55.08%), Query Frame = 1 
Query:  283 SLTKHHAPPALSVPVFSLATVNEDGS--------TNMNIVTYASPVGIEPERLWMVSLFKSTLSYENFVREGWGVMQLLQRNHAPLVPILGQSGGRDTDKAGRCAEQAFPW---DEPSCMNVAI--IPGCGSYVTLHMVSKQSAGDHDAIICRI-----GNIFGPDEAASSRLEVLESGHLRKAGII 789
            S T+   PP L  PVFSLATV+ DG+        TNMNI+TYA+PV + P+RLW++ L+K T++Y+NFV    G +QLL+  HA L+P+LG   GRDTDK   C    F W   +  S  N     +P C  Y+ L  V    AG HD  IC++      N    DE + +R   L +  LR  GII
Sbjct:   29 SFTETLKPPLLDSPVFSLATVSPDGTLSTASPSTTNMNILTYATPVSMSPDRLWVIGLYKGTVTYDNFVASRRGTLQLLRPEHATLIPVLGGKSGRDTDKYNACKSLGFSWVASEMQSANNEEPWRLPSCSCYLQLECVELCEAGSHDVAICKVVGMQTDNSSNDDEDSGTRGTHLGTQALRSMGII 215
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BLAST of Ec-27_006530.1 vs. uniprot
Match: A0A8J2SL81_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SL81_9STRA)

HSP 1 Score: 138 bits (348), Expect = 9.430e-36
Identity = 75/163 (46.01%), Postives = 101/163 (61.96%), Query Frame = 1 
Query:  307 PALSVPVFSLATVNEDGSTNMNIVTYASPVGIEPERLWMVSLFKSTLSYENFVREGWGVMQLLQRNHAPLVPILGQSGGRDTDKAGRCAEQAFPWDEPSCMNVAIIPGCGSYVTLHMVSKQ-SAGDHDAIICRI-GNIFGPDEAASSRLEVLESGHLRKAGII 789
            P L  PV+SLAT++E G TNMN+VTYA+PVGI PER W +SLFKST+S  NF R   GV+QLL+  HAPLV  LG +   D DKA  C    F W E S  +  ++P C +YV+L  V +    GDH+  +CR+   + G D + ++      +G LR+ G+I
Sbjct:   58 PLLDGPVYSLATLDEAGDTNMNVVTYATPVGIRPERRWALSLFKSTVSRANFARRRRGVLQLLRPEHAPLVYALGGTSAADADKAAACYGAGFAW-ESSDWDERVLPRCAAYVSLEAVGEPVDCGDHEVYVCRVVDGVAGFDASHAT------TGDLRERGLI 213
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BLAST of Ec-27_006530.1 vs. uniprot
Match: A0A7S4NG52_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4NG52_9EUKA)

HSP 1 Score: 131 bits (329), Expect = 4.430e-34
Identity = 69/164 (42.07%), Postives = 96/164 (58.54%), Query Frame = 1 
Query:  301 APPALSVPVFSLATVNEDGSTNMNIVTYASPVGIEPERLWMVSLFKSTLSYENFVREGWGVMQLLQRNHAPLVPILGQSGGRDTDKAGRCAEQAFPWDEPSCMNVAIIPGCGSYVTLHMVSK-QSAGDHDAIICRIGNIFGPDEAASSRLEVLESGHLRKAGII 789
            APP L+ PVF+LATV+  G+TNMNI+TYA+PVGI P R W++SLF+ T ++ NF R   GV+QLL+  HA LV  LG S  RD DK   C E  F W      +  ++P C +Y  L +     +AG+HD  +C +  +F PD         L++   R  G++
Sbjct:   23 APPPLNNPVFALATVDATGATNMNILTYATPVGIGPRR-WVISLFRKTETHGNFCRRRTGVLQLLRPCHAALVHTLGGSSARDVDKETACRELGFEWARFDGHDELLLPDCAAYYRLTLDGDVTNAGEHDVALCLLDGVFVPDADVGPADAALDTRECRALGLV 185
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BLAST of Ec-27_006530.1 vs. uniprot
Match: A0A7S2V2S1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2S1_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.770e-33
Identity = 72/195 (36.92%), Postives = 102/195 (52.31%), Query Frame = 1 
Query:  265 GDRALPSLTKHHAPPALSVPVFSLATVNEDGS-TNMNIVTYASPVGIEP--------------ERLWMVSLFKSTLSYENFVREGWGVMQLLQRNHAPLVPILGQSGGRDTDKAGRCAEQAFPWDEPSCMN-----VAIIPGCGSYVTLHMVSKQSAGDHDAIICRIGNIFGPDEAASSRLEVLESGHLRKAGII 789
            GD + P L++   PP LSVPVFSLAT+N     TNMNIVTYA PVG                 E+ W++SL++ TLS+ NF+  GWGV+Q+L +   P+V +LG+  G   DK        F W     +      V ++ GC +Y+T+  + +  AGDHD + C +   FG +        VL +  LRK  I+
Sbjct:   73 GDLSFPLLSRTTGPPPLSVPVFSLATINPSTKKTNMNIVTYACPVGTTTSSAAGEEGSGAGAGEKRWVLSLYRGTLSHRNFMESGWGVLQVLTKKQTPVVNLLGKQTGSKVDKRELSKVMGFEWTPFKGLRAPYDQVELMRGCAAYLTVKKIDRLDAGDHDVVFCHMDGSFGCEFMEGPSDPVLYTNQLRKLNIL 267
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BLAST of Ec-27_006530.1 vs. uniprot
Match: B8BV75_THAPS (Flavin_Reduct domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BV75_THAPS)

HSP 1 Score: 123 bits (309), Expect = 7.300e-31
Identity = 67/182 (36.81%), Postives = 103/182 (56.59%), Query Frame = 1 
Query:  304 PPALSVPVFSLATVN----EDGST---NMNIVTYASPVGIEPERLWMVSLFKSTLSYENFVREGWGVMQLLQRNHAPLVPILGQSGGRDTDKAGRCAEQAFPWDEPSCMN----------VAIIPGCGSYVTLHMVSKQ-SAGDHDAIICRIGNIFGPD--EAASSRLEVLESGHLRKAGII 789
            PP + VP +SL+T+     +DGS+    MN++TYA+P+ I+P R+W +SL+K T+++EN+ RE  GV+QLL   HA L+  LG S GRD DK   CA+  F W+    ++            ++P C  Y+ L MV      G H+  +CR+  +   D  + A+  L+ L +  LR+ GII
Sbjct:   27 PPLIDVPTYSLSTLGVDNGDDGSSVTSTMNVLTYATPISIQPFRMWSISLYKGTITHENWTRERRGVLQLLGPCHAELIRTLGGSSGRDVDKRAICAQLGFDWESLDVLDGEESDERVQWPLVLPSCLYYLQLEMVGDLIDCGSHEVALCRVVKMIADDGVQVAADELDCLNTRKLREMGII 208
The following BLAST results are available for this feature:
BLAST of Ec-27_006530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAS6_ECTSI5.110e-185100.00Flavin_Reduct domain-containing protein n=2 Tax=Ec... [more]
A0A7S2RNZ4_9STRA3.030e-3940.66Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2E2S7_9EUKA1.870e-3841.48Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S0HHD5_9EUKA5.670e-3843.75Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7S4PWJ3_9DINO4.250e-3646.31Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
B7G584_PHATC5.280e-3641.71Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A8J2SL81_9STRA9.430e-3646.01Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4NG52_9EUKA4.430e-3442.07Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S2V2S1_9STRA3.770e-3336.92Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B8BV75_THAPS7.300e-3136.81Flavin_Reduct domain-containing protein n=1 Tax=Th... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:6011625..6014907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score519.6
Seed ortholog evalue8.4e-145
Seed eggNOG ortholog2880.D8LAS6
Length792
Hectar predicted targeting categorychloroplast
Gene idEc-27_006530.1
EggNOG free text desc.Flavin reductase like domain
EggNOG OGs2DIVT@1,2S5ZD@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006530Ec-27_006530Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 6011599..6015744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006530.1Ec-27_006530.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 6011625..6014907 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006530.1.1Ec-27_006530.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6011625..6011936 +
Ec-27_006530.1.2Ec-27_006530.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6012534..6012659 +
Ec-27_006530.1.3Ec-27_006530.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6013228..6013318 +
Ec-27_006530.1.4Ec-27_006530.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6013672..6013811 +
Ec-27_006530.1.5Ec-27_006530.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 6014785..6014907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006530.1CDS:Ec-27_006530.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 6011625..6011936 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006530.1 ID=Ec-27_006530.1|Name=Ec-27_006530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=264bp
MMTTARRDWHAAVNAFVLLVLLGTFGEAFVAQSVAPSSSSSSRSTSERHR
SSSRCHDPTGASSPNRGSTSSTGRSGSVSFLRATEGEAGDRALPSLTKHH
APPALSVPVFSLATVNEDGSTNMNIVTYASPVGIEPERLWMVSLFKSTLS
YENFVREGWGVMQLLQRNHAPLVPILGQSGGRDTDKAGRCAEQAFPWDEP
SCMNVAIIPGCGSYVTLHMVSKQSAGDHDAIICRIGNIFGPDEAASSRLE
VLESGHLRKAGII*
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spliced messenger RNA

>Ec-27_006530.1 ID=Ec-27_006530.1|Name=Ec-27_006530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=792bp|location=Sequence derived from alignment at chr_27:6011625..6014907+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGACCACGGCAAGACGAGATTGGCATGCTGCGGTCAACGCGTTCGT
TCTTTTGGTCTTACTGGGAACGTTCGGAGAAGCATTCGTCGCTCAGTCTG
TGGCACCATCGTCATCATCGTCATCGCGATCGACTTCGGAGAGACACCGC
AGCAGCAGCAGATGTCATGATCCAACAGGAGCCAGCAGTCCAAACCGAGG
CAGTACGAGCAGCACCGGTAGGAGCGGTAGCGTCTCCTTCCTTCGAGCTA
CTGAGGGAGAAGCAGGGGATCGTGCGCTGCCGAGCTTGACGAAGCACCAC
GCACCTCCTGCGCTCAGCGTGCCGGTTTTCAGCCTTGCAACTGTGAACGA
GGACGGGTCGACGAACATGAACATCGTCACCTACGCTTCGCCGGTGGGTA
TCGAGCCGGAACGACTGTGGATGGTATCCTTGTTCAAGAGCACTTTGAGC
TACGAAAACTTCGTTCGAGAAGGCTGGGGTGTGATGCAGCTCTTGCAACG
AAATCACGCCCCGCTCGTGCCGATACTAGGGCAGAGCGGCGGGAGGGACA
CGGACAAGGCGGGAAGATGCGCGGAACAGGCGTTTCCGTGGGACGAGCCA
TCATGCATGAACGTTGCCATTATCCCTGGCTGTGGTTCCTACGTCACGCT
GCACATGGTCAGCAAACAGTCTGCAGGAGATCATGACGCCATAATCTGCC
GAATTGGGAACATTTTCGGACCTGATGAAGCCGCAAGTTCGCGGTTGGAG
GTTCTGGAATCGGGACATCTCCGCAAAGCTGGAATAATTTGA
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protein sequence of Ec-27_006530.1

>Ec-27_006530.1 ID=Ec-27_006530.1|Name=Ec-27_006530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=264bp
MMTTARRDWHAAVNAFVLLVLLGTFGEAFVAQSVAPSSSSSSRSTSERHR
SSSRCHDPTGASSPNRGSTSSTGRSGSVSFLRATEGEAGDRALPSLTKHH
APPALSVPVFSLATVNEDGSTNMNIVTYASPVGIEPERLWMVSLFKSTLS
YENFVREGWGVMQLLQRNHAPLVPILGQSGGRDTDKAGRCAEQAFPWDEP
SCMNVAIIPGCGSYVTLHMVSKQSAGDHDAIICRIGNIFGPDEAASSRLE
VLESGHLRKAGII*
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mRNA from alignment at chr_27:6011625..6014907+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006530.1 ID=Ec-27_006530.1|Name=Ec-27_006530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3283bp|location=Sequence derived from alignment at chr_27:6011625..6014907+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGACCACGGCAAGACGAGATTGGCATGCTGCGGTCAACGCGTTCGT
TCTTTTGGTCTTACTGGGAACGTTCGGAGAAGCATTCGTCGCTCAGTCTG
TGGCACCATCGTCATCATCGTCATCGCGATCGACTTCGGAGAGACACCGC
AGCAGCAGCAGATGTCATGATCCAACAGGAGCCAGCAGTCCAAACCGAGG
CAGTACGAGCAGCACCGGTAGGAGCGGTAGCGTCTCCTTCCTTCGAGCTA
CTGAGGGAGAAGCAGGGGATCGTGCGCTGCCGAGCTTGACGAAGCACCAC
GCACCTCCTGCGGTAAGCACAAGAGCCGTGTCGCCATTGCCTGTCTTGAG
CAATCTCTATCTAAGACAAGGCCAAGCGTGGTGCGCACTCGGTGGCCGCG
GGAATATGTTCCCATCGTTTGATAGATAGTGTCCCATTGGATGGGCAAGA
GAGGGGAAGAAGGAGGGGGTGGGTGGGAAAACATACGCATAAGGATCATG
TTGATGCTGAGAGACGGCGGATCTTGTTGTTGTGGATCGACATGTAGTCT
CTTCACCTGCCTTTCACACGACCCGCCCTGCTTGCTGCACGAGATAACTT
CGAATGTTACAGCCGTTCTACAGAGAGCGCTGGCGGTCCGTTACATGGGG
GAGTTCGACTAGTTGCTTCTTGTGAAAGCACTTCCACATCCTGCTGCTGC
AGCAGGTAGACGAGGCCACCTTCTAATACGCCACGCCACGCAAACACTTG
CTCCCTCCGTATAGGTTGCTGAACTGTAGGCGCCACCAACAGCTCCAGCC
TGGTTTGCTTTGCCCTCGGTTTTCATGGCAACGCTGTTCAACGCATGCAC
ATGGCACCTCCCTCCTTTTCGCCTGTGGCCGCCGCCGATTGCAAAACATA
CAAAAACAGCTCAGCGTGCCGGTTTTCAGCCTTGCAACTGTGAACGAGGA
CGGGTCGACGAACATGAACATCGTCACCTACGCTTCGCCGGTGGGTATCG
AGCCGGAACGACTGTGGATGGTATCCTTGTTCAAGGTGTGGACGGTATAT
ATGTCAAGTTCGTGTGGCGCACAACCTGGTTACTTGCTGCCGGTGTTCTT
TTGCGAACGAACGCGGTGCTCTCGACGTCGGAAGATGGCCCTTTTGTAGC
ACCACCTGGTGCACCATCTTGGATTCGCTAGGTTTGGCGGTTGGCCTTGA
TTTTGGCATGCTTTACGGTTTGTTTTCTTCCCATCTCTAGAGATGTTCGC
ATGCTTCGATTCGACGGTTTGGACGTGGGTCCCGGCCCACCGAAGCCGCA
TCTACTCCTCCGTGAGGTGAACGTCGATCCCTTCATTGCTCTTCGATATT
TCGCGTGACAACATGCCCCAGTGGTATGATGCGGCTGTTGCTGTCAGGTC
GAAACCAAGGCTCTTATCTCCAACAGAGACTTATTCCCGCCGCGGTGCAA
TGATTGAATGGGTGTATACATACGCAAGCAGCGGAAGTTCTCGCCGTAAG
ACTCTAGTCGTGGCTCGATCATCCTTCCTGTCGTCGCTGAAACGCTGCTG
CTCGCGTTCTTGCCGGCAACCACTGTTTTCTCTTTCCCGACGACTGTCTC
AAGAGCACTTTGAGCTACGAAAACTTCGTTCGAGAAGGCTGGGGTGTGAT
GCAGCTCTTGCAACGAAATCACGCCCCGCTCGTGCCGATACTAGGTGAGG
ACCTTGAAGGCATTTGATCAGTTGAGAACCCCAAGGGTCAACCGCTGTTT
ACCCAAGCCCAAGAACACGTCCCCACTTCAGGGCCCGGTTATTTTTCTCA
CTTTGGTGAGCTCTTGAGGAGAGGTGGCGTGCGAACATGTTGAGAGTCTA
CCGGCTTAATGACATACGTGTAGTGGCCCGCAGTGGCCAGGTAGAGAGGG
GCCGGGTTTCAAGGTAGGCGTCCGCAGTAAAAAGTCCTTCACCATGCTGC
TACCAGGTTCCGAACGTTTATCCAATCAGACTCGTTCCGAAAACTCTCTT
CCGTACACCATGTTTTCTTTGCTTCTCTGGTGGTATGAGTATTCCAGGGC
AGAGCGGCGGGAGGGACACGGACAAGGCGGGAAGATGCGCGGAACAGGCG
TTTCCGTGGGACGAGCCATCATGCATGAACGTTGCCATTATCCCTGGCTG
TGGTTCCTACGTCACGCTGCACATGGTCAGCAAACAGGTGGGGCAATAGT
AGCCTTCGCGCCATGGCTTTCACAGCTTGGCGAACAAAAAGTGAAGCAGC
AGTCGCACCACCTGCAGCCATATTCATGGCTTTCCTGTCTCAAAACGTAC
CCTCACACGCGGGCAAGTGTACGTCAGATCCACAGAACGATCACTCACGA
CCCCCGGGTTCAATGGAGGCGAGGTATGCGGTACGTCAAGAGACTCGCCC
TGGGCAGGGGTACCGGAGAAAGGAAGGCCTGGCGGGTAAACCGTGGTATT
TTGCTGGATACTGTCGAGCTCGACCACATGAATCCATACCGTTTCTCTCA
CAGCGGTCTTATCGATCTCCAAACTATTCGTATAATTACTTCGCGTTGTA
GGCTAGGGCCTATGACGTGGATTTCAGATCGTCCCACTTTCGATCGGGTT
CACCAACTACTACAGGAAGCACTGTACCGGATGCAAACGCTACGATATTT
TCCGCAAACCTAGAGTTATACCTGCGCCCACCCACCCCCACCCTCACTCT
TTGGCTTCAGTAGTGAACGACTTGGTACCGCAGTATCCACGTGCTCGCCA
CCCTTTCCTCTTGCGTACAGGCGGGCTTCCTATAAACGAGAACCGACCTC
GTTCTCTGAAGTCAGCGATGAAATGTGCGACTCTGGCCTACCTTTAACCA
TTGTCCTCTTCGCTCTATGTTGGCGAACTTGCGGTCTTCAACAAGAAAAC
GTAGCTTGTTGTCTAGCGCAGTTTCTTTTTTCGCCGCCACCATCGAGGAT
AGTGTAGGGTCTACCGCTGAGCGACGGGGGTCTTTCTTTCCCAAAGCTAT
TTTTGGGAACATCTGAGCCTTTCTCTAACAGAGTTGTTCGTAGTCGCGGA
TCGCAACCAGCTGCTGTGCTTCCTACAGTTCCACAGGTCAGGAAGAGGAG
AGAACGGAAACCATGCTCCCTCTCTCGCAACCCGGTGTTTTTGTTTGATC
TCACACCCAGTCTGCAGGAGATCATGACGCCATAATCTGCCGAATTGGGA
ACATTTTCGGACCTGATGAAGCCGCAAGTTCGCGGTTGGAGGTTCTGGAA
TCGGGACATCTCCGCAAAGCTGGAATAATTTGA
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Coding sequence (CDS) from alignment at chr_27:6011625..6014907+

>Ec-27_006530.1 ID=Ec-27_006530.1|Name=Ec-27_006530.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=792bp|location=Sequence derived from alignment at chr_27:6011625..6014907+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGACCACGGCAAGACGAGATTGGCATGCTGCGGTCAACGCGTTCGT
TCTTTTGGTCTTACTGGGAACGTTCGGAGAAGCATTCGTCGCTCAGTCTG
TGGCACCATCGTCATCATCGTCATCGCGATCGACTTCGGAGAGACACCGC
AGCAGCAGCAGATGTCATGATCCAACAGGAGCCAGCAGTCCAAACCGAGG
CAGTACGAGCAGCACCGGTAGGAGCGGTAGCGTCTCCTTCCTTCGAGCTA
CTGAGGGAGAAGCAGGGGATCGTGCGCTGCCGAGCTTGACGAAGCACCAC
GCACCTCCTGCGCTCAGCGTGCCGGTTTTCAGCCTTGCAACTGTGAACGA
GGACGGGTCGACGAACATGAACATCGTCACCTACGCTTCGCCGGTGGGTA
TCGAGCCGGAACGACTGTGGATGGTATCCTTGTTCAAGAGCACTTTGAGC
TACGAAAACTTCGTTCGAGAAGGCTGGGGTGTGATGCAGCTCTTGCAACG
AAATCACGCCCCGCTCGTGCCGATACTAGGGCAGAGCGGCGGGAGGGACA
CGGACAAGGCGGGAAGATGCGCGGAACAGGCGTTTCCGTGGGACGAGCCA
TCATGCATGAACGTTGCCATTATCCCTGGCTGTGGTTCCTACGTCACGCT
GCACATGGTCAGCAAACAGTCTGCAGGAGATCATGACGCCATAATCTGCC
GAATTGGGAACATTTTCGGACCTGATGAAGCCGCAAGTTCGCGGTTGGAG
GTTCTGGAATCGGGACATCTCCGCAAAGCTGGAATAATTTGA
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Synonyms
The feature 'Ec-27_006530.1' has the following synonyms
Synonym
Esi0000_0005
Esi_0000_0005