Ec-27_006420.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006420.1
Unique NameEc-27_006420.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length240
Homology
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BLAST of Ec-27_006420.1 vs. uniprot
Match: D8LAT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT7_ECTSI)

HSP 1 Score: 431 bits (1108), Expect = 5.590e-152
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 1 
Query:    1 MNLFGKAKAKPQAADTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM 717
            MNLFGKAKAKPQAADTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM
Sbjct:    1 MNLFGKAKAKPQAADTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM 239
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BLAST of Ec-27_006420.1 vs. uniprot
Match: A0A6H5KZ84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ84_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 1.120e-83
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 1 
Query:  286 MNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM 717
            MNMQTFNAMRSGAKAM+ ARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVP+GYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM
Sbjct:    1 MNMQTFNAMRSGAKAMEGARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPQGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM 144
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BLAST of Ec-27_006420.1 vs. uniprot
Match: A0A836CAA0_9STRA (Snf7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAA0_9STRA)

HSP 1 Score: 257 bits (656), Expect = 4.370e-83
Identity = 163/250 (65.20%), Postives = 186/250 (74.40%), Query Frame = 1 
Query:    1 MNLFGKAK--AKPQAADTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAA-----------PQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDARALRELEASM 711
            MNLFGK K  A     D T TI+KL+ET+D+L+KRE H+QKKIKAQLL+AKAKS   DK+GALFALKRKKMYE E+NK+NGAR+TLE Q IALEGSN N+QTF AM SG KAMQ ARG+LDVD VD VMDDI++EMDIA+QIG+AIARPA+ LFDDD LL EL  +EEA++EE LLA PAVP   P+A           P G  QP  A S    G +LPSVP T  V  P A EEDED RALRELEASM
Sbjct:    1 MNLFGKKKSAASGTPTDPTPTIMKLQETIDTLEKRETHLQKKIKAQLLEAKAKSQT-DKKGALFALKRKKMYEAEINKINGARITLEQQKIALEGSNTNLQTFQAMNSGRKAMQAARGQLDVDDVDAVMDDIQEEMDIADQIGEAIARPAEGLFDDDDLLAELGAMEEAEMEETLLAAPAVPARPPSAAMAAGSPTLVVPGGARQPVAAGSGS-SGMDLPSVP-TGDVRVPAA-EEDEDLRALRELEASM 246
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BLAST of Ec-27_006420.1 vs. uniprot
Match: A0A1W0A9Q0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9Q0_9STRA)

HSP 1 Score: 198 bits (503), Expect = 5.140e-60
Identity = 128/244 (52.46%), Postives = 165/244 (67.62%), Query Frame = 1 
Query:    1 MNLFGKAKAKPQA---ADTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADD-LFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDA-RALRELEASMAM 717
            MNLFG+  A P     A+T  TI KLRE LD L+KRE+HI+KKI+AQL +AK KS+AKDKRGA+F LKRKKMYE E+ KL GARMTLE+Q++ LE + +NMQTF A+R+GA  M+   G+++VD VDD+MDDI++EM  A++IG AI++P  + L+DDD L  ELDML E DLE+QL A       +PA  Q    PA A +     +  P  PS    +  V+ + D D    LR LEASMAM
Sbjct:    1 MNLFGRKAAAPVKTGPAETAETIRKLREQLDILEKRESHIEKKIEAQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVMTLESTQVNMQTFTALRTGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDDDELAAELDMLVEEDLEKQLDAA----HQQPAPAQPARVPAQAPATAASMFTFPEAPSHAVTNIKVSGKADADELEELRRLEASMAM 240
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BLAST of Ec-27_006420.1 vs. uniprot
Match: A0A482SS87_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SS87_9ARCH)

HSP 1 Score: 196 bits (498), Expect = 2.290e-59
Identity = 129/245 (52.65%), Postives = 165/245 (67.35%), Query Frame = 1 
Query:    1 MNLFGKAKAKPQAADTTS---TILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLL--APPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPS--TTPV-SAPVAVEEDEDARALRELEASM 711
            MNLFGK K   Q   T S   TI KLRE+L+ L+KRE HI KKI A L +AK KS  KDK GALFALKRKK+YE EV KL GAR+T+E+QI++LE +++N++TF AM++GA AM+  RG +D D+VDDVMD + +E DI + I +AI+RP  DLF+D+ LL+EL  L+  ++E  +     PA P A P  PQ V             +  P+VP+   +PV S PVA EEDED RALRELEASM
Sbjct:    1 MNLFGKKKQAQQPVPTQSPIETIAKLRESLNILEKREEHINKKIDASLQEAKLKSQKKDKNGALFALKRKKLYEAEVAKLQGARITMETQILSLESASVNIETFKAMKTGANAMKAMRGDIDADKVDDVMDALAEEKDIQDAISEAISRPGQDLFNDEELLDELAELDALEMEASVANTVAPAAPVAPP--PQSV-------------FNFPAVPTKAVSPVPSKPVAHEEDEDERALRELEASM 230
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BLAST of Ec-27_006420.1 vs. uniprot
Match: A0A7S3XYN0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYN0_HETAK)

HSP 1 Score: 191 bits (485), Expect = 2.370e-57
Identity = 118/242 (48.76%), Postives = 163/242 (67.36%), Query Frame = 1 
Query:    1 MNLFGKAK--AKPQAADTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEED-EDARALRELEASMAM 717
            MNLFGK K  A P A +T  TI++LR T+++LDKRE  I  KI  Q  +AKAK   KD+RGA+F LKRKKMYE E++KLNGA++ LE QI ALEG+++N + F A R+   A++ ARG +D D V++ +DDI +EM++A +IG+AI+RPA +LF+D+ LL+EL  LEE  +EE LLA PA P   P A       AVAE      Y+LP+ P+    ++ +  + D +D  ALR LEA +A+
Sbjct:    1 MNLFGKKKKAAVPAATNTADTIIRLRGTIETLDKRETFIAAKIVQQTNEAKAKLKKKDQRGAMFCLKRKKMYEKEIDKLNGAKLQLEQQIFALEGAHINTEAFEASRAAVGALKAARGNIDADTVEETLDDINEEMELANEIGEAISRPAQELFEDEELLDELRELEELGVEEDLLAAPAAPVRAPPAA------AVAEEAKQPAYDLPAAPTGAVAASAIQGDVDADDLDALRALEAELAV 236
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BLAST of Ec-27_006420.1 vs. uniprot
Match: A0A7S3NK50_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NK50_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.070e-55
Identity = 117/244 (47.95%), Postives = 154/244 (63.11%), Query Frame = 1 
Query:    1 MNLFGKAKAKPQAA-----DTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADDLFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM 717
            MNLFGK KA          D   TIL+LR T+++L+KR+ H+ KKI+ QL +AK K + KDKRGAL+ LKRKKMYEGE+ K+NGAR+TLE Q+IA+EG+  N +T  AM +G  AM  AR  + VD V ++MDDI DE++ A  I +AI+ PA+ + DD+ LL EL+ LEE +LE QLL  PAVP                        +LP VP+ TP       +ED D +ALRELEA+MA+
Sbjct:    1 MNLFGKKKAAGSGTGGGNVDPAQTILQLRNTVETLEKRQVHLDKKIEQQLAEAKVKIAKKDKRGALYCLKRKKMYEGEIEKINGARLTLEQQMIAIEGTVTNSETVKAMTAGKDAMAKARAGVTVDDVGELMDDITDEVEQANDIAEAISAPANQVLDDEDLLNELNELEELELESQLLDAPAVPAT--------------------AIDLPDVPTATPEIPVQQNQEDADTKALRELEAAMAL 224
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BLAST of Ec-27_006420.1 vs. uniprot
Match: A0A418AQT0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A418AQT0_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.880e-55
Identity = 121/244 (49.59%), Postives = 162/244 (66.39%), Query Frame = 1 
Query:    1 MNLFGK---AKAKPQAADTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADD-LFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDA-RALRELEASMAM 717
            MNLFG+   A  +   ADT  TI K+RE LD+L+KRE HI+KK++ QL +AK KS+AKDKRGA+F LKRKKMYE E+ KL GARMTLE+Q++ LE + +NM TF A+RSGA  M+   G+++VD VDD+MDDI++EM  A++IG AI++P  + L+D+D L ++L  L++  +EEQL  P  V     A PQ   Q A A+      + LP VP+       V  + D D    LR LEASMAM
Sbjct:   24 MNLFGRKAPAPVRTSPADTAETIRKIREQLDTLEKREAHIEKKMELQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVMTLESTQVNMATFTALRSGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDEDELEQQLRELDDLAMEEQLATPSPVAAPVQARPQPA-QAAPAQQPAQAMFNLPEVPTHAVSQVKVTGKADADELEELRRLEASMAM 266
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BLAST of Ec-27_006420.1 vs. uniprot
Match: A0A6G0XHZ3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHZ3_9STRA)

HSP 1 Score: 185 bits (469), Expect = 8.570e-55
Identity = 122/247 (49.39%), Postives = 161/247 (65.18%), Query Frame = 1 
Query:    1 MNLFGK---AKAKPQAADTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARP-ADDLFDDDALLEELDMLEEADLEEQLL--APPAVPTA-RPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDA-RALRELEASMAM 717
            MNLFG+   A  +   +DT  TI KLRE LD+L+KRE+HI+KKI  QL +AK KS+AKDKRGA+F LKRKKMYE E+ KL GARMTLE+Q++ LE + +NM TF AMR G + M+   G+++V+ VDD+MDDI++EM  A +I  AI++P  + L+DDD L  EL  LE+  +EE+L    P A P A RP A    ++P  A++  P    LP  P+       V  + D D    LR LEASMAM
Sbjct:    1 MNLFGRKAPAPVRTSPSDTAETIRKLREQLDTLEKRESHIEKKIALQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVMTLESTQVNMATFQAMRVGTQQMKAIHGQMNVESVDDIMDDIQEEMATANEIAQAISQPIGNTLYDDDELESELAALEDLAMEEELANATPVAAPAAVRPPAQPVAQRPQPAQAVSPAVLNLPEAPTHAVSQVKVTGKADADELEELRRLEASMAM 247
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BLAST of Ec-27_006420.1 vs. uniprot
Match: A0A067BTB4_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BTB4_SAPPC)

HSP 1 Score: 183 bits (464), Expect = 4.310e-54
Identity = 119/244 (48.77%), Postives = 161/244 (65.98%), Query Frame = 1 
Query:    1 MNLFGKAKAKPQA---ADTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKAKSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQTFNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADD-LFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKVPEGYELPSVPSTTPVSAPVAVEEDEDA-RALRELEASMAM 717
            MN FG+  A P     A+T  TI KLRE LD+L+KRE+HI+KKI+AQL +AK KS+AKDKRGA+F LKRKKMYE E+ KL GARMTLE+Q+I LE + +NMQTF A+R+GA  M+   G+++VD VDD+MDDI++EM  A++IG AI++P  + L+DDD L  EL+ + + +LE+QL +    PT + A P                +  P  P+    +  V+ + D D    LR LEASMAM
Sbjct:    1 MNFFGRKAAAPVKTGPAETAETIRKLREQLDTLEKRESHIEKKIEAQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVITLESTQVNMQTFTALRTGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDDDELAAELESMMDEELEKQLDSSRPTPT-QVAQPARXXXXXXXXXXXXSMFAFPDAPTHPVTNIKVSGKADADELEELRRLEASMAM 243
The following BLAST results are available for this feature:
BLAST of Ec-27_006420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAT7_ECTSI5.590e-152100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZ84_9PHAE1.120e-8397.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAA0_9STRA4.370e-8365.20Snf7-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A1W0A9Q0_9STRA5.140e-6052.46Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A482SS87_9ARCH2.290e-5952.65Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3XYN0_HETAK2.370e-5748.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3NK50_9STRA1.070e-5547.95Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A418AQT0_9STRA1.880e-5549.59Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A6G0XHZ3_9STRA8.570e-5549.39Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067BTB4_SAPPC4.310e-5448.77Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5936805..5941144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score439.5
Seed ortholog evalue1e-120
Seed eggNOG ortholog2880.D8LAT7
Preferred nameCHMP4C
Length720
KEGG koko:K12194,ko:K16075,ko:K17085,ko:K19306
KEGG TC1.A.35.5
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
Hectar predicted targeting categoryother localisation
Gene idEc-27_006420.1
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000278,GO:0000280,GO:0000281,GO:0000815,GO:0000819,GO:0000902,GO:0000904,GO:0000910,GO:0000920,GO:0001894,GO:0001919,GO:0003006,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006620,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006900,GO:0006914,GO:0006950,GO:0006996,GO:0006997,GO:0006998,GO:0007009,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0008333,GO:0008356,GO:0008565,GO:0008593,GO:0009056,GO:0009057,GO:0009268,GO:0009405,GO:0009628,GO:0009653,GO:0009838,GO:0009892,GO:0009894,GO:0009895,GO:0009898,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010035,GO:0010038,GO:0010226,GO:0010256,GO:0010324,GO:0010389,GO:0010458,GO:0010467,GO:0010506,GO:0010507,GO:0010564,GO:0010639,GO:0010646,GO:0010648,GO:0010824,GO:0010941,GO:0010948,GO:0010972,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016241,GO:0016242,GO:0016322,GO:0016358,GO:0016485,GO:0017145,GO:0019058,GO:0019068,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0019953,GO:0021700,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030117,GO:0030154,GO:0030163,GO:0030182,GO:0030425,GO:0030447,GO:0030496,GO:0031090,GO:0031175,GO:0031224,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031468,GO:0031505,GO:0031967,GO:0031975,GO:0031982,GO:0032465,GO:0032466,GO:0032501,GO:0032502,GO:0032504,GO:0032509,GO:0032511,GO:0032886,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034059,GO:0034613,GO:0034622,GO:0035690,GO:0036176,GO:0036177,GO:0036178,GO:0036257,GO:0036258,GO:0036293,GO:0036294,GO:0036438,GO:0036452,GO:0036477,GO:0039702,GO:0040007,GO:0040008,GO:0040012,GO:0040017,GO:0042058,GO:0042059,GO:0042078,GO:0042221,GO:0042493,GO:0042551,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043328,GO:0043632,GO:0043900,GO:0043901,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044087,GO:0044088,GO:0044126,GO:0044130,GO:0044144,GO:0044146,GO:0044182,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044878,GO:0045047,GO:0045169,GO:0045184,GO:0045229,GO:0045324,GO:0045746,GO:0045786,GO:0045926,GO:0045930,GO:0046605,GO:0046618,GO:0046755,GO:0046907,GO:0046983,GO:0048132,GO:0048285,GO:0048468,GO:0048469,GO:0048475,GO:0048477,GO:0048518,GO:0048519,GO:0048523,GO:0048524,GO:0048583,GO:0048585,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0048871,GO:0050000,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051117,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051258,GO:0051259,GO:0051260,GO:0051276,GO:0051301,GO:0051302,GO:0051303,GO:0051310,GO:0051493,GO:0051503,GO:0051603,GO:0051604,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051782,GO:0051783,GO:0060236,GO:0060249,GO:0060255,GO:0060548,GO:0061024,GO:0061640,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070482,GO:0070507,GO:0070676,GO:0070727,GO:0070887,GO:0070925,GO:0070938,GO:0070972,GO:0071214,GO:0071241,GO:0071248,GO:0071285,GO:0071453,GO:0071454,GO:0071467,GO:0071554,GO:0071555,GO:0071695,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071852,GO:0071944,GO:0071985,GO:0072594,GO:0072599,GO:0072657,GO:0072665,GO:0072666,GO:0080171,GO:0090148,GO:0090150,GO:0090169,GO:0090224,GO:0090543,GO:0090611,GO:0097320,GO:0097447,GO:0097458,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098722,GO:0098728,GO:0098796,GO:0098805,GO:0098813,GO:0104004,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0140014,GO:1901184,GO:1901185,GO:1901214,GO:1901215,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1901673,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902115,GO:1902116,GO:1902186,GO:1902188,GO:1902749,GO:1902750,GO:1902902,GO:1903047,GO:1903900,GO:1903902,GO:1904669,GO:1990635,GO:2000785
EggNOG free text desc.vacuolar transport
EggNOG OGsKOG1656@1,KOG1656@2759
EC2.1.1.309
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03009,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006420Ec-27_006420Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5936805..5941144 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006420.1.1Ec-27_006420.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5936805..5936902 +
Ec-27_006420.1.2Ec-27_006420.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5939189..5939351 +
Ec-27_006420.1.3Ec-27_006420.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5940101..5940256 +
Ec-27_006420.1.4Ec-27_006420.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5940842..5941144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006420.1CDS:Ec-27_006420.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5936805..5936902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006420.1Ec-27_006420.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5936805..5941144 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006420.1 ID=Ec-27_006420.1|Name=Ec-27_006420.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=240bp
MNLFGKAKAKPQAADTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKA
KSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQT
FNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADD
LFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKV
PEGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM*
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spliced messenger RNA

>Ec-27_006420.1 ID=Ec-27_006420.1|Name=Ec-27_006420.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=720bp|location=Sequence derived from alignment at chr_27:5936805..5941144+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCTGTTTGGAAAAGCAAAAGCGAAGCCGCAGGCCGCGGACACCAC
CTCCACCATCCTCAAGCTCAGGGAGACACTGGACTCCTTGGACAAGAGGG
AAAACCACATTCAGAAGAAGATCAAGGCGCAGCTGCTTGATGCCAAGGCG
AAAAGCAGCGCGAAGGATAAGAGAGGGGCCCTGTTCGCCCTCAAGAGAAA
GAAGATGTACGAAGGGGAAGTCAACAAGCTCAACGGAGCACGCATGACGC
TGGAGAGCCAGATCATCGCTCTAGAGGGGTCGAACATGAACATGCAGACG
TTCAACGCGATGCGGAGCGGTGCGAAGGCGATGCAGGACGCTAGGGGGCG
TCTGGACGTTGACCAGGTGGATGATGTGATGGACGACATCAAGGACGAGA
TGGACATCGCGGAGCAGATCGGGGACGCGATCGCGAGGCCGGCGGACGAC
CTCTTTGACGACGACGCCCTCCTGGAAGAGTTAGACATGCTTGAGGAGGC
GGACCTCGAGGAGCAGCTCCTCGCACCCCCCGCGGTGCCGACGGCGCGGC
CCGCGGCGCCCCAGGGAGTCGAGCAGCCGGCGGTCGCCGAATCGAAGGTC
CCCGAAGGGTACGAGTTGCCATCGGTGCCGTCGACAACCCCCGTCAGCGC
GCCCGTAGCGGTGGAGGAGGACGAGGACGCTCGAGCACTGCGGGAGCTCG
AGGCCAGCATGGCGATGTGA
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protein sequence of Ec-27_006420.1

>Ec-27_006420.1 ID=Ec-27_006420.1|Name=Ec-27_006420.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=240bp
MNLFGKAKAKPQAADTTSTILKLRETLDSLDKRENHIQKKIKAQLLDAKA
KSSAKDKRGALFALKRKKMYEGEVNKLNGARMTLESQIIALEGSNMNMQT
FNAMRSGAKAMQDARGRLDVDQVDDVMDDIKDEMDIAEQIGDAIARPADD
LFDDDALLEELDMLEEADLEEQLLAPPAVPTARPAAPQGVEQPAVAESKV
PEGYELPSVPSTTPVSAPVAVEEDEDARALRELEASMAM*
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mRNA from alignment at chr_27:5936805..5941144+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006420.1 ID=Ec-27_006420.1|Name=Ec-27_006420.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4340bp|location=Sequence derived from alignment at chr_27:5936805..5941144+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAATCTGTTTGGAAAAGCAAAAGCGAAGCCGCAGGCCGCGGACACCAC
CTCCACCATCCTCAAGCTCAGGGAGACACTGGACTCCTTGGACAAGAGGT
GAGGGCAGCTTCGAACTCAAAGAGGAGTTGGTTCGCAAGGTATACAACCC
GTCCTGGTTCTTTTGATATAAGAACCGGGGCAACTATCTGTCGAGAGGGC
ACCAGCTGCTGTGAAGCCCGCGGGGTTGATGTAGAACAGGGTTTCGGAAT
TGACACGCTAGACCTGTGAAACCGTTGTCACACACAACACCTACGTTTCT
ATGGCCTGGTGATGCCCTTCTGTGACACGAGCGTGCATTTATAAAACGGC
CTTTGGTTTTGCGGCGGTCTTTTGCTGAACACTAACATTATTGTTTGCAG
TCCACACGTACTCTACTTGTAAAACCGCGAATAAGCATGAGCACGGGAGC
TGTGCTGCTGTAGCAACCAAACCCAGTGCGTCGACGGCATCCCCGCACGC
ATTGGTGAGGAGAGCATGGCTCGTTTCTGTTCGATATGGGGCCCTGTTAT
GTGAGTTTCTTTATCTGAAGCGAGAGGACCGCGTGACCGAGAAACACTTG
GAAGCACACGAGACAGCGCGGCGGATTGTGAATAAATTTTCTTGCGCTCC
AGGATGAGACTCAATAGCCGTTGGTTGGACGGATGTGGCAAGGATGATTT
TTTACCACATGTGCATCATCAGCTGGCATAAGTTTAACCCCTTTCCAGCC
CACACCGGTACGATCGCTTCTGTGGACTGCCGTAGCCTGTTAAATTTGCA
AGATTTCTCCGCCGTATCTACGGTTGCAGAGCTGCCGATGTTCTTTTCCT
GTAGATTTGCGCTCTTGAACCGAAGCAACCAGGTTACGCGTTCTTTAGTA
TGATCCGCACGATGTACACGTATAAACTTAACCTTTCGAAATGTGCGAAC
TACTTGCCAGCAGTGTATGCATGTGAACATCATATTTCCCATTGTTAAGG
CAGTCGGCGACCTCGGACCTTGACCCTCGACGTTGCGGGGCCGAATTTCT
CTGGAGTGAAAAAAACGCTGTTTTCATGTGCGCGAAAAGCGCACAGCAGT
CACGAGCAAACACAGGAGAGATATTTTAGACTAGTGCTGTGCTGAACGAA
CCCTCTCTCCGCGTTAATGATCGAGGGCAAAGCATGTTATGGGGAAGGAG
GGATGGAGAATGCAATCCAGTTTTTGCGTTCCTCCAGTATGTCCCCTACT
GATGCGTCAACAATTTACCGAAGGTGAAGATTGGCCCCCACATTTGATGG
GCCGATTGGGTACAGATACATTTTGCCCCATGGGACAGCTCGTGACCAGT
GAAACCTTACTTATTTTGTGGCCTCTTCACGACGCACTGGTGAGGTCATT
CCAGATGCATGCAGTAATCAAACAAGATAACACCCCCTGGTGATTTCAAA
GTGGTTTTCCGACACCTTTTGCTTTTTTTTTGCCACTTGTACATGTTTGG
CGTTTCAATAATAGTATCACCGGGTGTGATGTTCTGTAGAGGTTACCTTG
TGATATAGCATCGAGAGAGCAACAATCGCCAAAGCAATTGCCGCTCTCTG
GGTTCCGCTGTGTACAGCTTTTCTCAGCAATATATCCGCCTCGTCCGACT
CAGAAACGATGTTTCGTCTGCCGGCCACACGGAGGCCGAGCTGGTGTTCA
CGACGCATATACAGCGGTACAAGTAGTCGCTGTTCTCCACAGCACATCAC
TTGCTAAGCGACTTCGGGCTGCTATCGTTGTGAGGTTCAAACTGGGACCG
CTGGCAGCGCTGAAAAGCCGCGCGACCACCTCGTCTTCCGAAGTTTGTAG
AGCCTCTGAAGAACTGGGTTCCACCGAATGCGGCTCGTGTCCGTGAAGCT
AATGTTGTACTCCCATGCGTCCTAGAGGCTTCATCTGATACATTGTATAA
TAGTATGGAGTTGCGATGCCGCCAATTACGGCAGTGGAGTTGTGGGATAG
AAAAAAACGGTCATGGCCGCTGAATATTCGAACGAATTTATCGAAAAAAA
TGTGTTATTATTGGATGCTTCTAATGCCCTATCACGTTTGGGTATGCATG
CGGTACAGTTCTCCTTGGAATCAGTGTGATTCCACATAAGATGAAGCCGC
ACCCACACAAAACGAGCAATTGCCGGTGCTGTGCGTAGGAGACACACATC
TCGCCTTAATTGTCAGACTCCTGTGACACAGGTCCAGCGATCAGCCATAA
CGCTAATCCCACCTGTTCTGGCGCCAGTCTGCATCTTTCGGAATATGAAT
TTGACGTACAAGCCGGTGTCACACAGGAGAAAATAACACGGAGACCTTCA
TTTTCTTTTACTTTTTGTGTACTCGGAAATATAGGGAAAACCACATTCAG
AAGAAGATCAAGGCGCAGCTGCTTGATGCCAAGGCGAAAAGCAGCGCGAA
GGATAAGAGAGGGGCCCTGTTCGCCCTCAAGAGAAAGAAGATGTACGAAG
GGGAAGTCAACAAGCTCAACGGAGCACGCATGACGCTGGAGAGCCAGGTG
GGTGGGTGAAGGCAACGCCAAGTCGAGCCCCGTATGCCTGTGAGTACGGG
TTTACGTTGCTGGTGATGGAGGAGAGCTGGCGTTGTGCTGTCTGAGCTTA
TTTCCGCCGAGAGCTACAATATGCGGTTAAACCGCTGTTTGGTTGTTTGT
GTTCAGACTTGTGGCAAGCGAGAGGGTCTCCGGGGTGTTAGCGGCTGCAT
AGTGGTGTACTACCCTCTCTTGACAGGCAGGGGGGTGCTAGTCAAGAGAA
GCGCAGCGAAGATTGTGCATCTATGAACTCCGGGAGCTTGTGAACGAATC
ACCTTTAAGCAAGTAAGGCTTGCAAACCTTCAGCATGATGTGAAAAGGAT
TGTTTTGTGGCGTGGAACGTAGCCCAGACTTGGCGAGCTGTACATGTCCG
GTTTCATAACCGGTGCCTGATCTTGAACCATGCTCCTTTCAAAGCAAGGT
TGGTGGTGGTGCTTTGGTCTCATGCTTGCTTCCAACATCACGAGCTTGGC
CACGGGCGCGAGGCATAAAAATTTCGCCCCCGTGGGCTTGCAGGTATTTA
TCGGCAAGTGTTCCTGCTCCTTTGTCGCCCCGCCGCAGCGTTTCGTCTTT
CGAGTGTCGATCGATCAGGCAGGCTCCAGCTTCGCGTTTCAATGCTGTTC
CCCACCTCCCCTGTCCCCCAGTCTGCACTCCCCTTTTCTCACCCCTCCGC
TTACTGCTGTCCGCCGCGTGTGGAACTGTCCTGTCCACGCCCCCAGATCA
TCGCTCTAGAGGGGTCGAACATGAACATGCAGACGTTCAACGCGATGCGG
AGCGGTGCGAAGGCGATGCAGGACGCTAGGGGGCGTCTGGACGTTGACCA
GGTGGATGATGTGATGGACGACATCAAGGACGAGATGGACATCGCGGAGC
AGGTGCGTGGTTGTTGTTGCTGTTGCCACTGCTGCCGATGTGGTCGTGGC
GATTACCACCAACGATACTCGTGATGTTTTTTTTTTTTCCTGCACCGCAT
TTGTTTCGGGGCGTCATACATATATCGACATATATATATATTTTTTTTTT
TTGCGCACAAAACGAAGAGCACTGCCTCGACACGCCACGTCAAGTCACTG
AGAGGATGATTCCAGCTGCACCCTGTTGCGCTTGCCGATGGAATATGCGT
AAGAGTTGTCATACCGACGCCCATTTCCTGTCTTTAATGTGCCTGGTTAC
TTGCCCCTCCGTGTCTTGTGTCAGACGAAAAGGAACACAAATGTATGTAG
GACGCGGCGGGACATTCGGTGCGTTTTTGTCCCGATGTAGTGCCGGTCTA
GCTTCAGTGGCCTGTGGGAGCACCCACAACCAACCAAAACACCTGTTGAA
CCGGATCATTCGCCACCACAATCCCCAACACCCAGCCTTCAAATCTCGAG
TCCCCTCAAAAGTCACCCAATATCACCCCCATTCAAACCAACACAAACCG
ATCACCCAACCCGGCGTCACACCCAACAATCAATCAGATCGGGGACGCGA
TCGCGAGGCCGGCGGACGACCTCTTTGACGACGACGCCCTCCTGGAAGAG
TTAGACATGCTTGAGGAGGCGGACCTCGAGGAGCAGCTCCTCGCACCCCC
CGCGGTGCCGACGGCGCGGCCCGCGGCGCCCCAGGGAGTCGAGCAGCCGG
CGGTCGCCGAATCGAAGGTCCCCGAAGGGTACGAGTTGCCATCGGTGCCG
TCGACAACCCCCGTCAGCGCGCCCGTAGCGGTGGAGGAGGACGAGGACGC
TCGAGCACTGCGGGAGCTCGAGGCCAGCATGGCGATGTGA
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Coding sequence (CDS) from alignment at chr_27:5936805..5941144+

>Ec-27_006420.1 ID=Ec-27_006420.1|Name=Ec-27_006420.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=720bp|location=Sequence derived from alignment at chr_27:5936805..5941144+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAATCTGTTTGGAAAAGCAAAAGCGAAGCCGCAGGCCGCGGACACCAC
CTCCACCATCCTCAAGCTCAGGGAGACACTGGACTCCTTGGACAAGAGGG
AAAACCACATTCAGAAGAAGATCAAGGCGCAGCTGCTTGATGCCAAGGCG
AAAAGCAGCGCGAAGGATAAGAGAGGGGCCCTGTTCGCCCTCAAGAGAAA
GAAGATGTACGAAGGGGAAGTCAACAAGCTCAACGGAGCACGCATGACGC
TGGAGAGCCAGATCATCGCTCTAGAGGGGTCGAACATGAACATGCAGACG
TTCAACGCGATGCGGAGCGGTGCGAAGGCGATGCAGGACGCTAGGGGGCG
TCTGGACGTTGACCAGGTGGATGATGTGATGGACGACATCAAGGACGAGA
TGGACATCGCGGAGCAGATCGGGGACGCGATCGCGAGGCCGGCGGACGAC
CTCTTTGACGACGACGCCCTCCTGGAAGAGTTAGACATGCTTGAGGAGGC
GGACCTCGAGGAGCAGCTCCTCGCACCCCCCGCGGTGCCGACGGCGCGGC
CCGCGGCGCCCCAGGGAGTCGAGCAGCCGGCGGTCGCCGAATCGAAGGTC
CCCGAAGGGTACGAGTTGCCATCGGTGCCGTCGACAACCCCCGTCAGCGC
GCCCGTAGCGGTGGAGGAGGACGAGGACGCTCGAGCACTGCGGGAGCTCG
AGGCCAGCATGGCGATGTGA
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Synonyms
The feature 'Ec-27_006420.1' has the following synonyms
Synonym
Esi0000_0020
Esi_0000_0020