Ec-27_006400.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006400.1
Unique NameEc-27_006400.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length341
Homology
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BLAST of Ec-27_006400.1 vs. uniprot
Match: D8LAT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT9_ECTSI)

HSP 1 Score: 698 bits (1801), Expect = 1.740e-254
Identity = 324/340 (95.29%), Postives = 324/340 (95.29%), Query Frame = 1 
Query:    1 MIGIGLLYRRRRACNCFNQNFHALRLPTTAAAPQIKGEGDRAHHIRYISVVSERHSGFTWMTSFLWEYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWIGGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPEKEQRARKDALVKAEEELPCIDNFLPNEVLPCKENGRSSIYELDRDGRAYGNIYELRKAKILDFNAVETWVPFYEKVVYEDMLVGPGLRDWLRSLETKYGLVGNYMDVPDNVLQTNMARLWSNMYYTNSEHCAPNCTMGGVTGATAVEALHQMWDEELESGIGYNKVDVQGKAEKNRDV 1020
            MIGIGLLYRRRRACNCFNQNFHALRLPTTAAAPQIKGEGDRAHHIRYISVVSERHSGFTWMTSFLWEYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWIGGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPE                LPCIDNFLPNEVLPCKENGRSSIYELDRDGRAYGNIYELRKAKILDFNAVETWVPFYEKVVYEDMLVGPGLRDWLRSLETKYGLVGNYMDVPDNVLQTNMARLWSNMYYTNSEHCAPNCTMGGVTGATAVEALHQMWDEELESGIGYNKVDVQGKAEKNRDV
Sbjct:    1 MIGIGLLYRRRRACNCFNQNFHALRLPTTAAAPQIKGEGDRAHHIRYISVVSERHSGFTWMTSFLWEYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWIGGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPE----------------LPCIDNFLPNEVLPCKENGRSSIYELDRDGRAYGNIYELRKAKILDFNAVETWVPFYEKVVYEDMLVGPGLRDWLRSLETKYGLVGNYMDVPDNVLQTNMARLWSNMYYTNSEHCAPNCTMGGVTGATAVEALHQMWDEELESGIGYNKVDVQGKAEKNRDV 324
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BLAST of Ec-27_006400.1 vs. uniprot
Match: D8LAU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU0_ECTSI)

HSP 1 Score: 607 bits (1564), Expect = 2.090e-218
Identity = 282/310 (90.97%), Postives = 285/310 (91.94%), Query Frame = 1 
Query:   88 AAAPQIKGEGDRAHHIRYISVVSERHSGFTWMTSFLWEYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWIGGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPEKEQRARKDALVKAEEELPCIDNFLPNEVLPCKENGRSSIYELDRDGRAYGNIYELRKAKILDFNAVETWVPFYEKVVYEDMLVGPGLRDWLRSLETKYGLVGNYMDVPDNVLQTNMARLWSNMYYTNSEHCAPNCTMGGVTGATAVEALHQMWDEELESGIGYNKVDVQGKAEKNRD 1017
            AAAPQIKGEG+ AHHIRYISVV+ERHSG  W T FL EYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWI GMHSNPHHAKAHRGVQDLEQFMTMPWIMGPE                LPCIDNFLPNEVLPCKEN RSSIYELDRDGRAYGNIYELRKAKILDFNAVETWVPFYEKVVYEDMLVGPGLRDWLRSLETKYGLVGNYMDVPDNVLQTNMARLW NMYYTNSEHCAPNCTMGGVTGATAVEALHQMWDEELESGIGY+KVDVQGKAEKNRD
Sbjct:   27 AAAPQIKGEGEGAHHIRYISVVAERHSGSRWFTGFLREYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWISGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPE----------------LPCIDNFLPNEVLPCKENDRSSIYELDRDGRAYGNIYELRKAKILDFNAVETWVPFYEKVVYEDMLVGPGLRDWLRSLETKYGLVGNYMDVPDNVLQTNMARLWRNMYYTNSEHCAPNCTMGGVTGATAVEALHQMWDEELESGIGYHKVDVQGKAEKNRD 320
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BLAST of Ec-27_006400.1 vs. uniprot
Match: A0A6H5LNE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNE9_9PHAE)

HSP 1 Score: 422 bits (1084), Expect = 2.200e-144
Identity = 186/301 (61.79%), Postives = 228/301 (75.75%), Query Frame = 1 
Query:   82 TTAAAPQIKGEGDRAHHIRYISVVSERHSGFTWMTSFLWEYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWIGGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPEKEQRARKDALVKAEEELPCIDNFLPNEVLPCKENGRSSIYELDRDGRAYGNIYELRKAKILDFNAVETWVPFYEKVVYEDMLVGPGLRDWLRSLETKYGLVGNYMDVPDNVLQTNMARLWSNMYYTNSEHCAPNCTMGGVTGATAVEALHQMWDEELESGIGYNKV 984
            TT  +   K  G     I+YIS++ ERHSG TWM  FL +YFRDKD+ VT TLCTWKHWFQDRI+QD+QDGKR CR  QQCPAC D  HTLVV MWRNPYDW+ GMH  P HA+AH  + D+ +FMTMPWIMG E+E++ARK+AL++ ++ELPCIDNFLP EVLPC+    S+IYELD  G AYGNIYELRKAKI DF+AV+ W P+YEK++YEDML   GL+ WL SL+T YGL GNY  VPD+ L   M      MYY NS+HCAP+C MGGV G +A+E ++++WDEELE  +GY++V
Sbjct:   83 TTPLSLATKTRGVGPLKIKYISLIGERHSGTTWMVKFLQDYFRDKDITVTATLCTWKHWFQDRIYQDIQDGKRLCREGQQCPACKDINHTLVVAMWRNPYDWVSGMHKIPWHAQAHASIPDMSKFMTMPWIMGAEEEKQARKEALIRTKDELPCIDNFLPWEVLPCRPGDESAIYELDPGGEAYGNIYELRKAKIRDFDAVKMWAPYYEKILYEDMLAKDGLKMWLMSLDTLYGLGGNYKSVPDSALAVKMESSRKQMYYMNSQHCAPHCKMGGVAGRSALETMNRLWDEELEEDLGYHQV 383
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BLAST of Ec-27_006400.1 vs. uniprot
Match: D7FTA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA1_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 6.700e-123
Identity = 176/268 (65.67%), Postives = 195/268 (72.76%), Query Frame = 1 
Query:   73 RLPTTAAAPQIKG--EGDRAHHIRYISVVSERHSGFTWMTSFLWEYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWIGGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPEKEQRARKDALVKAEEELPCIDNFLPNEVLPCKENGRSSIYELDRDGRAYGNIYELRKAKILDFNAVETWVPFYEKVVYEDMLVGPGLRDWLRSLETKYGLVGNYMDVPDNVLQTNMARLWSNMYYTNS 870
            RLP TAAAPQI+G  EG+  HHI+YIS+++ERHSG TWMT FL  YFR  DV VTPTLCTWKHWFQDRIHQD+QDGKRPCR +QQCPACLDTEHTLVV MWRNPYDWI GM SNPHHAKAHRGVQDL ++MTMPWIM P+ E+RARKDAL+KA+EE                                         AKILDFNAVETWVPFYEK+  EDML G  L DWLRSLETKYGLVGNY+DV D+ L  +MA   S+MYYTNS
Sbjct:    4 RLPNTAAAPQIEGGGEGEGPHHIKYISLIAERHSGSTWMTGFLSRYFRHSDVKVTPTLCTWKHWFQDRIHQDIQDGKRPCREHQQCPACLDTEHTLVVAMWRNPYDWISGMQSNPHHAKAHRGVQDLSEYMTMPWIMQPKNEERARKDALIKAKEE-----------------------------------------AKILDFNAVETWVPFYEKIADEDMLDGETLGDWLRSLETKYGLVGNYIDVLDSALGESMAHSRSHMYYTNS 230
[Close]
BLAST of Ec-27_006400.1 vs. uniprot
Match: D8LB15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB15_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 1.360e-62
Identity = 87/127 (68.50%), Postives = 100/127 (78.74%), Query Frame = 1 
Query:  133 IRYISVVSERHSGFTWMTSFLWEYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWIGGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPE--KEQRARK 507
            I+YIS++ ERHSG TWM  FL +YFRDKD+ VT TLCTWKHWFQDRI+QD+ DGKRPCR  QQCPAC D  HTLVV MWRNPYDWI GMH  P HA+AH  + D+ +FMTMPWIMG E    +RAR+
Sbjct:   10 IKYISLIGERHSGTTWMVKFLQDYFRDKDITVTATLCTWKHWFQDRIYQDIHDGKRPCREGQQCPACKDINHTLVVAMWRNPYDWISGMHKIPWHAQAHASIPDMSKFMTMPWIMGAEVRDHRRARR 136
[Close]
BLAST of Ec-27_006400.1 vs. uniprot
Match: A0A7S0G6T5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G6T5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.770e-21
Identity = 70/234 (29.91%), Postives = 112/234 (47.86%), Query Frame = 1 
Query:  142 ISVVSERHSGFTWMTSFLWEYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWIGGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPEKEQRARKDALVKAEEELPCIDNFLPNEVLPCKEN---------GRSS---IYELDRDG--RAYGNIYELRKAKILDFNAVETW--VPFYEKVVYEDMLVGPGLRDWLRSLETKYGLVGN 795
            IS++ ER++G  W+T+ L + F    +  +  L  WKHWFQD    D  + +R              + TLV+ M+RNPY+W+  M   PHH+ +H  ++  + F+T PW M      R   D +        C + F   +V+ C+           G SS   IYE+  DG  + + NI E+R AKI +   V+ W  +     V YED+L   G  +++++LE   G+  +
Sbjct:   59 ISLLGERNTGTNWVTALLSKCF--PGIKTSARLVRWKHWFQD---DDSNENER--------------QKTLVIAMFRNPYEWVMAMRKTPHHSPSHLRLK-WQNFVTKPWTM-----TRPESDLVFSNSTGQICHEKFAYKDVISCQRQPPELMSSTGGYSSGKPIYEMRHDGSGKPFANILEMRAAKIHNHLGVQEWPWISGVHVVRYEDLLED-GTGNFIKNLEKLTGVTAS 266
[Close]
BLAST of Ec-27_006400.1 vs. uniprot
Match: A0A7S2U9S4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9S4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 8.810e-20
Identity = 84/302 (27.81%), Postives = 124/302 (41.06%), Query Frame = 1 
Query:  133 IRYISVVSERHSGFTWMTSFLWEYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWIGGMHSNPHHAKAH-RGVQDLEQFMTMPWIMGPEKEQRARKDALVKAEEELPCIDNFLPNEVLPCKE---------------NGRSSIYELDRDG--RAYGNIYELRKAKILDFNAVETWVPFYEKVVYE-DMLVGPGLRDWLRSLETKYGLVGNYMDVPDNVLQTNMARLWSNMYYTNSEHCAPNCTMGGVTGATAVEALHQMWDEELESGIGYNK 981
            IR IS+V ER+SG TWMTS + + F D ++ V      +KH FQ   H +V                   E TLV+V+ RNPY+WI  M   PHHA +H R   + ++F+  PW        R   D  +  E    C  NF  NE+  C E               +  +  YE+ +DG  + + NI E+R AKIL+F  +E +   Y    Y  +  +  G    +  +E   G+  N    P    +    RL    Y                     ++ +++  D E+E  I Y K
Sbjct:   95 IRKISIVGERNSGTTWMTSHMQDCFND-NIWVDNHFTRYKHHFQFD-HPEVVP-----------------ESTLVLVIHRNPYEWILSMRKRPHHAPSHIRKENEWQEFLETPWTTN-----RTDLDMTLANETGRICQQNFTFNEINSCLERPHPEGSYDKNSSQWSNHTPFYEMRQDGSGQPFNNILEMRSAKILNFLELENYQNTYAAWHYHYEYFLQYGTEHVISRIENATGVQRNCTASPPQPERPRQKRLGDKNY---------------------IDYMNEHVDWEIEKLISYKK 351
[Close]
BLAST of Ec-27_006400.1 vs. uniprot
Match: A0A7S2E1N5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E1N5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 9.710e-19
Identity = 70/237 (29.54%), Postives = 109/237 (45.99%), Query Frame = 1 
Query:  142 ISVVSERHSGFTWMTSFLWEYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTE----HTLVVVMWRNPYDWIGGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPEKEQRARKDALVKAEEELPCIDNFLPNEVLPC---------------KENGRSSIYELDRDGRA--YGNIYELRKAKILDFNAVETWVPFYEKVVYE-DMLVGPGLRDWLRSLETKYGL 786
            ++++ ER SG TW+   L E F    V +   L  +KHWFQ    +D   G             LD E    ++LV+ M+RNPYDW   MH  PHHA AH  +   ++F+T  W       +R  KD  +  +E   C D F  +EV+ C               + +    +YE+  DG    Y NI ++R  KI +F  V+ +    +  VY+ + L+  G  ++L+ +E   G+
Sbjct:   59 VAILGERSSGTTWIYEHLTECFAH-GVPIRRRLEKYKHWFQVDEERDDYKG-------------LDFETYPTNSLVISMFRNPYDWTTAMHRVPHHAPAHIDLP-WKEFLTKAWTT-----ERVGKDLNITDKENFLCQDKFKYHEVVSCIHKPMGDEYWKDKKTRFSEHQPVYEMKNDGSGEPYDNILDMRADKIRNFLTVKDFKRITDFWVYKYEDLLADGTEEFLQKIEKATGV 275
[Close]
BLAST of Ec-27_006400.1 vs. uniprot
Match: A0A7S1VY01_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VY01_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.310e-18
Identity = 69/233 (29.61%), Postives = 110/233 (47.21%), Query Frame = 1 
Query:  142 ISVVSERHSGFTWMTSFLWEYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWIGGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPEKEQRARKDALVKAEEELPCIDNFLPNEVLPC--KENGRS-------------SIYELDRDGRA--YGNIYELRKAKILDFNAVETWVPFYEKVVYE-DMLVGPGLRDWLRSLETKYGL 786
            ++++ ER SG TW+   L E F +  V +   L  +KHWFQ+       D   P              ++LV+ ++RNPYDW+  MH  PHH+ +H  +   ++F+T  W       +R   D  +   + + C +NF  +EV+ C  K  G+               +YEL  DG    Y NI ELR AK ++F  V+ +    +  VY+ + L+  G  D+LR +E   G+
Sbjct:  191 VAILGERSSGTTWIYEHLTECF-NHSVPIKRRLNRYKHWFQE-------DSNYP-------------SNSLVIAIFRNPYDWMEAMHRVPHHSPSHMDLS-WKEFLTKTWTT-----ERVGHDLNITDTKSVVCQENFQYHEVVSCIHKPMGQEYWEGKKTRFSEHQPVYELKHDGSGEPYDNIMELRAAKNVNFMEVKDFKRITDFWVYKYESLLKEGTEDFLRRIEEATGV 396
[Close]
BLAST of Ec-27_006400.1 vs. uniprot
Match: B8BQL9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQL9_THAPS)

HSP 1 Score: 97.4 bits (241), Expect = 1.520e-18
Identity = 74/235 (31.49%), Postives = 104/235 (44.26%), Query Frame = 1 
Query:   82 TTAAAPQIKGEGDRAHHIRYISVVSERHSGFTWMTSFLWEYFRDKDVM----------------------VTPTLCTWKHWFQDRIHQDVQDGKRPCRGNQQCPACLDTEHTLVVVMWRNPYDWIGGMHSNPHHAKAHRGVQDLEQFMTMPWIMGPE--KEQRARKDA----LVKAEEELPCIDNFLPNEVLPCK-------ENGRSSIYEL--DRDGRAYGNIYELRKAKILDF 675
            T  AAP     G +A  +  I+++ ERHSG  W+T  L + F D  +                       V  +   +KHWFQ   +  VQD                 + T+V+ M+R+PYDW+  MH  PHHA  H  +     F+T PW  GP    +    K A     V A+ E  C+ N+  NE++PC        E     +YEL  D  GRAY +I +LR+ KIL+F
Sbjct:  520 TEVAAPS-NANGGKATGVTSITLIGERHSGTNWITDHLNDCFGDDLISDGDSPGESTHIGLSFLQNLISKVKVSYARFKHWFQFD-YTAVQD-----------------KSTVVIAMFRDPYDWVAAMHERPHHAHKHMNLH-WRDFVTRPW-RGPRGIADYNLLKAAGGYEEVNAQVETKCLCNYTWNEIIPCSVKDSVLVEGFGMYMYELMPDGSGRAYPSIVDLRRDKILNF 733
The following BLAST results are available for this feature:
BLAST of Ec-27_006400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D8LAT9_ECTSI1.740e-25495.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LAU0_ECTSI2.090e-21890.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LNE9_9PHAE2.200e-14461.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTA1_ECTSI6.700e-12365.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LB15_ECTSI1.360e-6268.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0G6T5_9STRA1.770e-2129.91Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2U9S4_9STRA8.810e-2027.81Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2E1N5_9STRA9.710e-1929.54Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1VY01_9STRA1.310e-1829.61Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
B8BQL9_THAPS1.520e-1831.49Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5923034..5927316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score698.4
Seed ortholog evalue1.7e-198
Seed eggNOG ortholog2880.D8LAT9
Length1023
Hectar predicted targeting categorymitochondrion
Gene idEc-27_006400.1
EggNOG OGs2EKXM@1,2SQQN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006400Ec-27_006400Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5923034..5927316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006400.1Ec-27_006400.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5923034..5927316 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006400.1.8Ec-27_006400.1.8Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5923034..5923187 -
Ec-27_006400.1.7Ec-27_006400.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5923709..5923801 -
Ec-27_006400.1.6Ec-27_006400.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5924174..5924292 -
Ec-27_006400.1.5Ec-27_006400.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5924570..5924692 -
Ec-27_006400.1.4Ec-27_006400.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5924989..5925036 -
Ec-27_006400.1.3Ec-27_006400.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5925586..5925648 -
Ec-27_006400.1.2Ec-27_006400.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5926012..5926182 -
Ec-27_006400.1.1Ec-27_006400.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5927065..5927316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006400.1CDS:Ec-27_006400.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5923034..5923187 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006400.1 ID=Ec-27_006400.1|Name=Ec-27_006400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=341bp
MIGIGLLYRRRRACNCFNQNFHALRLPTTAAAPQIKGEGDRAHHIRYISV
VSERHSGFTWMTSFLWEYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKR
PCRGNQQCPACLDTEHTLVVVMWRNPYDWIGGMHSNPHHAKAHRGVQDLE
QFMTMPWIMGPEKEQRARKDALVKAEEELPCIDNFLPNEVLPCKENGRSS
IYELDRDGRAYGNIYELRKAKILDFNAVETWVPFYEKVVYEDMLVGPGLR
DWLRSLETKYGLVGNYMDVPDNVLQTNMARLWSNMYYTNSEHCAPNCTMG
GVTGATAVEALHQMWDEELESGIGYNKVDVQGKAEKNRDV*
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spliced messenger RNA

>Ec-27_006400.1 ID=Ec-27_006400.1|Name=Ec-27_006400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1023bp|location=Sequence derived from alignment at chr_27:5923034..5927316- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGGCATTGGCTTGCTGTACCGACGTCGCAGAGCATGTAATTGTTT
TAACCAGAACTTCCATGCATTGCGCCTGCCTACTACAGCCGCAGCACCTC
AAATAAAAGGAGAGGGGGACCGTGCTCACCACATCAGGTACATATCTGTC
GTTTCCGAGCGTCACAGCGGCTTCACGTGGATGACTAGTTTTCTCTGGGA
ATACTTTCGAGACAAGGATGTCATGGTCACCCCAACGCTCTGCACATGGA
AGCACTGGTTCCAGGATCGCATACACCAAGACGTCCAAGATGGCAAACGC
CCCTGCCGAGGAAATCAACAGTGCCCTGCGTGCTTAGACACCGAACACAC
CCTCGTGGTTGTCATGTGGCGGAACCCGTACGACTGGATCGGCGGGATGC
ATTCCAACCCGCACCATGCCAAGGCACATCGTGGAGTACAGGACCTGGAG
CAGTTCATGACAATGCCGTGGATAATGGGCCCAGAGAAAGAGCAGCGCGC
GAGGAAAGACGCTTTGGTCAAGGCCGAGGAGGAGCTTCCGTGCATCGACA
ACTTCCTGCCGAACGAGGTGCTGCCGTGCAAGGAGAACGGCAGGTCATCC
ATCTACGAGCTAGACCGCGACGGACGCGCGTACGGAAACATCTACGAACT
GAGGAAGGCCAAAATCCTTGACTTCAACGCTGTCGAGACCTGGGTACCGT
TCTACGAGAAGGTGGTGTACGAAGACATGCTTGTCGGGCCAGGGCTCAGG
GATTGGCTCAGGTCGCTCGAGACAAAGTATGGCCTCGTTGGGAACTACAT
GGATGTTCCGGACAACGTTCTTCAGACAAACATGGCACGGTTGTGGAGCA
ACATGTACTACACGAACAGCGAGCATTGCGCGCCGAACTGCACTATGGGC
GGTGTGACGGGAGCCACAGCTGTGGAAGCCCTGCACCAGATGTGGGACGA
GGAGCTAGAGAGTGGGATCGGGTACAACAAAGTTGATGTGCAGGGCAAAG
CGGAGAAGAACCGCGATGTATGA
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protein sequence of Ec-27_006400.1

>Ec-27_006400.1 ID=Ec-27_006400.1|Name=Ec-27_006400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=341bp
MIGIGLLYRRRRACNCFNQNFHALRLPTTAAAPQIKGEGDRAHHIRYISV
VSERHSGFTWMTSFLWEYFRDKDVMVTPTLCTWKHWFQDRIHQDVQDGKR
PCRGNQQCPACLDTEHTLVVVMWRNPYDWIGGMHSNPHHAKAHRGVQDLE
QFMTMPWIMGPEKEQRARKDALVKAEEELPCIDNFLPNEVLPCKENGRSS
IYELDRDGRAYGNIYELRKAKILDFNAVETWVPFYEKVVYEDMLVGPGLR
DWLRSLETKYGLVGNYMDVPDNVLQTNMARLWSNMYYTNSEHCAPNCTMG
GVTGATAVEALHQMWDEELESGIGYNKVDVQGKAEKNRDV*
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mRNA from alignment at chr_27:5923034..5927316-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006400.1 ID=Ec-27_006400.1|Name=Ec-27_006400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4283bp|location=Sequence derived from alignment at chr_27:5923034..5927316- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATTGGCATTGGCTTGCTGTACCGACGTCGCAGAGCATGTAATTGTTT
TAACCAGAACTTCCATGCATTGCGCCTGCCTACTACAGCCGCAGCACCTC
AAATAAAAGGAGAGGGGGACCGTGCTCACCACATCAGGTACATATCTGTC
GTTTCCGAGCGTCACAGCGGCTTCACGTGGATGACTAGTTTTCTCTGGGA
ATACTTTCGAGACAAGGATGTCATGGTCACCCCAACGCTCTGCACATGGA
AGGTTTGTTCCGACCCGTGTTCGTCCCTCCGACGATGATTGTCATACGGC
AGTTGGCGTGCTTGTGACGTCGGGTTTGTCGTTGCCATGATGAGGCCATG
TCAAGCTCTTTGTGGACGGCAGCAGCACCGGCAGCAGCAACGCGTGCTGC
GTGAGTACGCCATCCGCGAAGAGGGAGAAGACCAAATCGTTGGCAACTCT
TGTTCCGTACGCGCGTCGACGCCTAATACTACAGCAGCCAACCTCGTCGG
GTCCTCGCGAACGGCGACAAGGCGTGGTGACACCAACCAGAAGGGAATTT
GTCTCGCAAGGGAGTCGAACTCGACACGCTCGGACAAAATTCTGATCGTC
AAGCTGATTTAAGGCACCGCCAGATAACGGCACCGTACACCATTTTATCC
TTCCAAGTTTCGTCGCTGGGTTTGCCGACGGAACTATTGTACACGTTTCC
GACAGGTTTTCCGGAAGATACTCTGTACCAAATCACGAACTTGAACATCG
GAGGATGGGCTTGTACAATGCGCTACTGATACACTCCTCGAGGTTTTGCC
GCAGGATCTTCTTTGGTACAAGTGGCTTTGTCGTAGCATGATCTTCTTGA
CATGGCATTATTCTCGCGGAGGCGTTAGTACCTCCGCTTCGTCTCGTTTG
TACTTGGGCTGTGTTTTCTTTTACGGCAAACGCACCATTGGTAATGCCTA
GGTCGACACCAAAACCAAACACGTTTTCACAAGCAACCCGGTAGAAGCTC
GCGTGGTACGGGGGCAAGTAGCAGGGTGGCGGCACCCTCTTGAAACCCAT
TTTCCTCGCAGCCTCTGCGTGTGTATTCAGTTGTTGATATTCCCCGTCTC
CGCACACACGTACACTCTTCTTGTTGTCGTTCAGCACTGGTTCCAGGATC
GCATACACCAAGACGTCCAAGATGGCAAACGCCCCTGCCGAGGAAATCAA
CAGTGCCCTGCGTGCTTAGACACCGAACACACCCTCGTGGTTGTCATGTG
GCGGAACCCGTACGACTGGATCGGCGGGATGCATTCCAACCCGCACCATG
CCAAGGTATCGAACAAGCGCAACTACAGACTTGGATGGGATGATGAATCG
GTAGCTGGCCCATGAAGCAGAATGTATTGAGTTGGGATATTCAGAATGTT
CTGTTCACTAAACAAGGACACACGCAGGGCCCGAGAACAATACCGCAGCC
CGAAGACCGTGATAGAACCAGAAAATATCGACGTGTACTCTAGTCTTCGT
ACAGAACAGGCTGCCACTGAACAACTACCCGGCATGTGGTGCGGACTCAA
AAACCGACAATATCTCTGCTCTTGAGGATCAAACCTTGAAAGAGAACCTG
CAGCGGACTCGTGAAAAAGAGGCCGTGATATCCACCCCCCTTGCTCTAAC
CGCGGGGGAGCTGCTCAGGCACATCGTGGAGTACAGGACCTGGAGCAGTT
CATGACAATGCCGTGGATAATGGGCCCAGAGGTGAAGAAAGAGCCCGCCG
TGTTCATTACCCAGACGTTGTCCATGGAAGTCCACCTCGTCATGTAAATC
CGGCTGTTTCTTGTGGCTGGTGCTCTTGCCAAGGATCTGTCTATCTGTGT
GATAATGTGTTGTTGTTGCGGTTGTTGCTATTGCCCTCGTGGTTGTCATC
ATCGTCGTCCTCGTCGTTTTTTTGTTTGTTTTTGCTGCGGCCGTGTTGTT
GTGTCGGTGTGTGTTGCTGTTAGTTTTCCTACATTTTGGTCTAATTTCCC
CTAACTTACAAAAGCTGTTGTTTGCAATGTCTACCCTGGGGTCTACGTGT
AACTGTTCTTTGTTTGTATTATAGTGAGTTATCGCAAACGGTGCTCAACA
ACACGCTCGAGTAAGGTTGACTCGAAGCCCCGGCCATATTTTCCGCGTTA
TCCGCTCAGATATCCGGTTCGTTCATATTTGGAGCCCGCATGGGTTCACC
ACGGTTGTCGGAACATCCAACCGGTGAAGTCAACAACAACCGAATCGTCA
TGCTGTACCGCCTCCGTGAAAATGAAACAGAAAGAGCAGCGCGCGAGGAA
AGACGCTTTGGTCAAGGCCGAGGAGGAGGTGAACTCTCGCGCGCGCCCCT
CCGAGAACACTTCTCGTTATTGGTCCTAGACTATTCGGAACAGTGCCACG
AATCGGGCCGTCTATTGAACCAACGATCCAACGTCGTGGGGCCGCTCGCT
GAGCGAATGGATGCGACATGGTGCCTTCATCGTGAGACGAAAAGAGGGGA
GACGCAATGCATACATGGAATTCGTTTACATCATTGGTCGGCGATCCTTG
CTTCTGACCAAACTGCGGCGCCTTGTCGCGTTGCATCCCTTTCGTCGGGG
TTCGTGCCTGTTGAACTCCTCCAGCTTCCGTGCATCGACAACTTCCTGCC
GAACGAGGTGCTGCCGTGCAAGGAGAACGGCAGGTCATCCATCTACGAGC
TAGACCGCGACGGACGCGCGTACGGAAACATCTACGAACTGAGGAAGGTG
AATGCCAAGCGCTACTGGTGTATCTGTAAGACACAACGTCGTTTCACGAT
GTTCTCGCTTGGTATCTTCGCGGTCCAGCTTAGGTTATGTTTAAGTCATT
TTCTGCTCGGACCACCGATGGCTTTGATTCGGGTTTGTTTACCATTGTTT
TGACCCCTCATCGTTGTTTCAGAATACCATACACAGAGGATGCATGTTGC
TATGTACTATCTAGGGTATCTTTTCCTTTTCGCTTGTTTTGGTACCCCTT
GCTGCATGCGTGGGGTGGACTCAGGCCAAAATCCTTGACTTCAACGCTGT
CGAGACCTGGGTACCGTTCTACGAGAAGGTGGTGTACGAAGACATGCTTG
TCGGGCCAGGGCTCAGGGATTGGCTCAGGTCGCTCGAGACAAAGTGAGCT
TCACCCAGAACAAGGGAAACACGTATTCATTGCCGAGTTTCTCTTAGTAT
AGGAAGCGTCTGCTTGGTACCCCGAGAGCGAGAGAAAAGGCGCCGTACGT
ACGCCGTAAGATTTTCTCTGCTGGTGCTGCTGCCGGTGGGTCCGCCGGTG
GTGCAAGCTGTAGACTATTGAGACCGCGTGGTGATATTTCATTGCTGTCG
CCGAAGCCGACCCTCTGCACGGTGGGGTGCGGAGTTGGCTTCAGGAAAGC
ACTCCTTGTACAGTCGCATCGGATACCACGGAGCAGCGCGTTCCGCCGTA
CACATCAACGTCCCGTCCGACCATAGCTCATTGATATTGTCGCCGCTGGT
TTCGCTTGTGCCCAGGTATGGCCTCGTTGGGAACTACATGGATGTTCCGG
ACAACGTTCTTCAGACAAACATGGCACGGTTGTGGAGCAACATGTACTAC
ACGAACAGGTGAGTGAGAAGGTTCAACCCCCTTTTCCATCCTTCGGAGAT
TCTCTAGGGGCACATGGACTATGTATGTAGGTGCAGGTGCATCTTGCGGC
TCATAGTGATGTAGGGAGTCATTCTTCAAAACCAAGGCGGACAAACGGAA
GTAGGCGTGGAACGGTCCTTGGCAGACGCGATACCTACACTGCGGGTGTA
TGGTGGCGGTGGCGCCTTTTCGAACATAGGCGTTGTGTGAACACAACTTG
GGGTGCAGTCCGTCAATCATATCCTGCAAAGGCGTACATCAAAATGGTTT
ACTCAATCAAATCTCTCAGCGGTCCGGATCGTCTCCTCGCGCCCCTACGC
CTAGATGCGAAAGACAAAATGGCCGGCTCAAGATGCAACGAAGTGATCGC
TCTTGTGTTTACTCTCTACGGGACCAGTGACATCCAGTTCGCCTCGTCGT
GTTGTTATTCCATCTCACGATGCTCTCCTCTTACCTGCCTCGTCTGGACA
ATACCGGCCACAAACAAACCGTGATGAAGCGAGCATTGCGCGCCGAACTG
CACTATGGGCGGTGTGACGGGAGCCACAGCTGTGGAAGCCCTGCACCAGA
TGTGGGACGAGGAGCTAGAGAGTGGGATCGGGTACAACAAAGTTGATGTG
CAGGGCAAAGCGGAGAAGAACCGCGATGTATGA
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Coding sequence (CDS) from alignment at chr_27:5923034..5927316-

>Ec-27_006400.1 ID=Ec-27_006400.1|Name=Ec-27_006400.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1023bp|location=Sequence derived from alignment at chr_27:5923034..5927316- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATTGGCATTGGCTTGCTGTACCGACGTCGCAGAGCATGTAATTGTTT
TAACCAGAACTTCCATGCATTGCGCCTGCCTACTACAGCCGCAGCACCTC
AAATAAAAGGAGAGGGGGACCGTGCTCACCACATCAGGTACATATCTGTC
GTTTCCGAGCGTCACAGCGGCTTCACGTGGATGACTAGTTTTCTCTGGGA
ATACTTTCGAGACAAGGATGTCATGGTCACCCCAACGCTCTGCACATGGA
AGCACTGGTTCCAGGATCGCATACACCAAGACGTCCAAGATGGCAAACGC
CCCTGCCGAGGAAATCAACAGTGCCCTGCGTGCTTAGACACCGAACACAC
CCTCGTGGTTGTCATGTGGCGGAACCCGTACGACTGGATCGGCGGGATGC
ATTCCAACCCGCACCATGCCAAGGCACATCGTGGAGTACAGGACCTGGAG
CAGTTCATGACAATGCCGTGGATAATGGGCCCAGAGAAAGAGCAGCGCGC
GAGGAAAGACGCTTTGGTCAAGGCCGAGGAGGAGCTTCCGTGCATCGACA
ACTTCCTGCCGAACGAGGTGCTGCCGTGCAAGGAGAACGGCAGGTCATCC
ATCTACGAGCTAGACCGCGACGGACGCGCGTACGGAAACATCTACGAACT
GAGGAAGGCCAAAATCCTTGACTTCAACGCTGTCGAGACCTGGGTACCGT
TCTACGAGAAGGTGGTGTACGAAGACATGCTTGTCGGGCCAGGGCTCAGG
GATTGGCTCAGGTCGCTCGAGACAAAGTATGGCCTCGTTGGGAACTACAT
GGATGTTCCGGACAACGTTCTTCAGACAAACATGGCACGGTTGTGGAGCA
ACATGTACTACACGAACAGCGAGCATTGCGCGCCGAACTGCACTATGGGC
GGTGTGACGGGAGCCACAGCTGTGGAAGCCCTGCACCAGATGTGGGACGA
GGAGCTAGAGAGTGGGATCGGGTACAACAAAGTTGATGTGCAGGGCAAAG
CGGAGAAGAACCGCGATGTATGA
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Synonyms
The feature 'Ec-27_006400.1' has the following synonyms
Synonym
Esi0000_0023
Esi_0000_0023